1.Machine learning empowered COVID-19 patient monitoring using non-contact sensing:An extensive review
Saeed UMER ; Shah Yaseen SYED ; Ahmad JAWAD ; Imran Ali MUHAMMAD ; H.Abbasi QAMMER ; Shah Aziz SYED
Journal of Pharmaceutical Analysis 2022;12(2):193-204
The severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),which caused the coronavirus disease 2019(COVID-19)pandemic,has affected more than 400 million people worldwide.With the recent rise of new Delta and Omicron variants,the efficacy of the vaccines has become an important question.The goal of various studies has been to limit the spread of the virus by utilizing wireless sensing technologies to prevent human-to-human interactions,particularly for healthcare workers.In this paper,we discuss the current literature on invasive/contact and non-invasive/non-contact technologies(including Wi-Fi,radar,and software-defined radio)that have been effectively used to detect,diagnose,and monitor human activities and COVID-19 related symptoms,such as irregular respiration.In addition,we focused on cutting-edge machine learning algorithms(such as generative adversarial networks,random forest,multilayer perceptron,support vector machine,extremely randomized trees,and k-nearest neighbors)and their essential role in intelligent healthcare systems.Furthermore,this study highlights the limitations related to non-invasive techniques and prospective research directions.
2.Analysis of primary benign orbital lesions
Partab RAI ; Syed Imtiaz Ali SHAH ; Ashok Kumar NARSANI ; Javed Hassan NIAZI ; Memon Muhammad KHAN ; Saeed, IQBAL
International Eye Science 2009;09(4):634-641
AIM: To study the pattern of presentation and to highlight the common causes of primary benign orbital lesions.of Jinnah Postgraduate Medical Centre Karachi from July 1997 to August 2001 and then from September 2001 to date (Continued) at the Department of Ophthalmology of Chandka Medical College & Hospital Larkana. Only patients with primary benign orbital lesions were included in this study. All the patients were admitted in eye ward from the out patients department. The diagnosis of the disease was based on the presentation, clinical examination, investigations and histopathology of excised mass. A total of 68 patients were included in this study. The age range was from 2 months to 60 years. Out of 68, 27 (39.7%) patients were male and 41 (60.3%) were female. The left orbit was involved in 35 (51.5%) and right orbit was involved in 33 (48.5%).revealed that superficial capillary hemangiomas of the eye lid were the most common lesion 26 (38.2%) followed by deep orbital cavernous hemangiomas 5 (7.4%), lymphangiomas 5 (7.4%), orbital varices 4 (5.9%), gliomas 7 (10.3%), meningiomas 5 (7.4%), neurofibromas 5 (7.4%), neurofibromatosis 4 (5.9%), schwannomas 2 (2.9%), and pleomorphic adenoma (benign mixed cell tumor) of lacrimal gland 5 (7.4%) cases.treatment can prevent the patient from visual and life threatening complications.
3.Marine Sponges as a Drug Treasure.
Komal ANJUM ; Syed Qamar ABBAS ; Sayed Asmat Ali SHAH ; Najeeb AKHTER ; Sundas BATOOL ; Syed Shams ul HASSAN
Biomolecules & Therapeutics 2016;24(4):347-362
Marine sponges have been considered as a drug treasure house with respect to great potential regarding their secondary metabolites. Most of the studies have been conducted on sponge's derived compounds to examine its pharmacological properties. Such compounds proved to have antibacterial, antiviral, antifungal, antimalarial, antitumor, immunosuppressive, and cardiovascular activity. Although, the mode of action of many compounds by which they interfere with human pathogenesis have not been clear till now, in this review not only the capability of the medicinal substances have been examined in vitro and in vivo against serious pathogenic microbes but, the mode of actions of medicinal compounds were explained with diagrammatic illustrations. This knowledge is one of the basic components to be known especially for transforming medicinal molecules to medicines. Sponges produce a different kind of chemical substances with numerous carbon skeletons, which have been found to be the main component interfering with human pathogenesis at different sites. The fact that different diseases have the capability to fight at different sites inside the body can increase the chances to produce targeted medicines.
Carbon
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Humans
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In Vitro Techniques
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Pharmacokinetics
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Porifera*
;
Skeleton
4.Erratum to “Marine Sponges as a Drug Treasure” Biomol.Ther. 24 (2016) 347–362.
Komal ANJUM ; Syed Qamar ABBAS ; Sayed Asmat Ali SHAH ; Najeeb AKHTER ; Sundas BATOOL ; Syed Shams ul HASSAN
Biomolecules & Therapeutics 2016;24(5):559-559
The authors request to correct the title of Table 3.
5.Aberrant Promoter Methylation at CpG Cytosines Induce the Upregulation of the E2F5 Gene in Breast Cancer.
Arshad ALI ; Farman ULLAH ; Irum Sabir ALI ; Ahmad FARAZ ; Mumtaz KHAN ; Syed Tahir Ali SHAH ; Nawab ALI ; Muhammad SAEED
Journal of Breast Cancer 2016;19(2):133-141
PURPOSE: The promoter methylation status of cell cycle regulatory genes plays a crucial role in the regulation of the eukaryotic cell cycle. CpG cytosines are actively subjected to methylation during tumorigenesis, resulting in gain/loss of function. E2F5 gene has growth repressive activities; various studies suggest its involvement in tumorigenesis. This study aims to investigate the epigenetic regulation of E2F5 in breast cancer to better understand tumor biology. METHODS: The promoter methylation status of 50 breast tumor tissues and adjacent normal control tissues was analyzed. mRNA expression was determined using SYBR® green quantitative polymerase chain reaction (PCR), and methylation-specific PCR was performed for bisulfite-modified genomic DNA using E2F5-specific primers to assess promoter methylation. Data was statistically analyzed. RESULTS: Significant (p<0.001) upregulation was observed in E2F5 expression among tumor tissues, relative to the control group. These samples were hypo-methylated at the E2F5 promoter region in the tumor tissues, compared to the control. Change in the methylation status (Δmeth) was significantly lower (p=0.022) in the tumor samples, indicating possible involvement in tumorigenesis. Patients at the postmenopausal stage showed higher methylation (75%) than those at the premenopausal stage (23.1%). Interestingly, methylation levels gradually increased from the early to the advanced stages of the disease (p<0.001), which suggests a putative role of E2F5 methylation in disease progression that can significantly modulate tumor biology at more advanced stage and at postmenopausal age (Pearson's r=0.99 and 0.86, respectively). Among tissues with different histological status, methylation frequency was higher in invasive lobular carcinoma (80.0%), followed by invasive ductal carcinoma (46.7%) and ductal carcinoma in situ (20.0%). CONCLUSION: Methylation is an important epigenetic factor that might be involved in the upregulation of E2F5 gene in tumor tissues, which can be used as a prognostic marker for breast cancer.
Biology
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Breast Neoplasms*
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Breast*
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Carcinogenesis
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Carcinoma, Ductal
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Carcinoma, Intraductal, Noninfiltrating
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Carcinoma, Lobular
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Cell Cycle
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Disease Progression
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DNA
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E2F5 Transcription Factor
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Epigenomics
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Eukaryotic Cells
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Genes, Regulator
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Humans
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Methylation*
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Polymerase Chain Reaction
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Promoter Regions, Genetic
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RNA, Messenger
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Up-Regulation*
6.Oroantral communication, its causes, complications, treatments and radiographic features:A pictorial review
Rama SHAHROUR ; Priya SHAH ; Thimanthi WITHANA ; Jennifer JUNG ; Ali Z SYED
Imaging Science in Dentistry 2021;51(3):307-311
Purpose:
An oroantral communication (OAC) is an abnormal space between the maxillary sinus and oral cavity. The causes, complications, treatment, and radiographic features of OAC in 2-dimensional and 3-dimensional imaging modalities are discussed.
Materials and Methods:
This pictorial review presents a broad spectrum of imaging findings of OAC. Representative radiographs depicting OAC were chosen from our database. PubMed was used to conduct a comprehensive literature search of OAC.
Results:
Characteristic features of OAC include discontinuity of the maxillary sinus floor, thickening of the maxillary sinus mucosa, or a combination of both. Two-dimensional imaging modalities are the method of choice for identifying discontinuities in the maxillary sinus floor. However, 3-dimensional imaging modalities are also essential for determining the status of soft tissue in the maxillary sinus.
Conclusion
The integration of 2-dimensional and 3-dimensional imaging modalities is crucial for the correct diagnosis and comprehensive treatment of OAC. However, the diagnosis of OAC must be confirmed clinically to prevent unnecessary mental and financial burdens to patients
7.Reactive oxygen species-mediated unfolded protein response pathways in preimplantation embryos.
Ihsan ALI ; Syed Zahid Ali SHAH ; Yi JIN ; Zhong Shu LI ; Obaid ULLAH ; Nan Zhu FANG
Journal of Veterinary Science 2017;18(1):1-9
Excessive production of reactive oxygen species (ROS) and endoplasmic reticulum (ER) stress-mediated responses are critical to embryonic development in the challenging in vitro environment. ROS production increases during early embryonic development with the increase in protein requirements for cell survival and growth. The ER is a multifunctional cellular organelle responsible for protein folding, modification, and cellular homeostasis. ER stress is activated by a variety of factors including ROS. Such stress leads to activation of the adaptive unfolded protein response (UPR), which restores homeostasis. However, chronic stress can exceed the toleration level of the ER, resulting in cellular apoptosis. In this review, we briefly describe the generation and impact of ROS in preimplantation embryo development, the ROS-mediated activation mechanism of the UPR via the ER, and the subsequent activation of signaling pathways following ER stress in preimplantation embryos.
Apoptosis
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Blastocyst*
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Cell Survival
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Embryonic Development
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Endoplasmic Reticulum
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Female
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Homeostasis
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In Vitro Techniques
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Organelles
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Oxygen*
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Pregnancy
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Protein Folding
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Reactive Oxygen Species
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Unfolded Protein Response*
8.A classification of genes involved in normal and delayed male puberty.
Maleeha AKRAM ; Syed Shakeel RAZA RIZVI ; Mazhar QAYYUM ; David J HANDELSMAN
Asian Journal of Andrology 2023;25(2):230-239
Puberty is a pivotal biological process that completes sexual maturation to achieve full reproductive capability. It is a major transformational period of life, whose timing is strongly affected by genetic makeup of the individual, along with various internal and external factors. Although the exact mechanism for initiation of the cascade of molecular events that culminate in puberty is not yet known, the process of pubertal onset involves interaction of numerous complex signaling pathways of hypothalamo-pituitary-testicular (HPT) axis. We developed a classification of the mechanisms involved in male puberty that allowed placing many genes into physiological context. These include (i) hypothalamic development during embryogenesis, (ii) synaptogenesis where gonadotropin releasing hormone (GnRH) neurons form neuronal connections with suprahypothalamic neurons, (iii) maintenance of neuron homeostasis, (iv) regulation of synthesis and secretion of GnRH, (v) appropriate receptors/proteins on neurons governing GnRH production and release, (vi) signaling molecules activated by the receptors, (vii) the synthesis and release of GnRH, (viii) the production and release of gonadotropins, (ix) testicular development, (x) synthesis and release of steroid hormones from testes, and (xi)the action of steroid hormones in downstream effector tissues. Defects in components of this system during embryonic development, childhood/adolescence, or adulthood may disrupt/nullify puberty, leading to long-term male infertility and/or hypogonadism. This review provides a list of 598 genes involved in the development of HPT axis and classified according to this schema. Furthermore, this review identifies a subset of 75 genes for which genetic mutations are reported to delay or disrupt male puberty.
Adolescent
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Male
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Humans
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Adult
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Child
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Gonadotropin-Releasing Hormone
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Gonadotropins/metabolism*
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Hypogonadism
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Testis/metabolism*
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Puberty/physiology*
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Sexual Maturation
9.Laparoscopy offers better clinical outcomes and long-term survival in patients with right colon cancer: experience from national cancer center
Muhammad Fahd SHAH ; Awais NAEEM ; Ihtisham ul HAQ ; Shehryar RIAZ ; Osama SHAKEEL ; Sofoklis PANTELEIMONITIS ; Shahid KHATTAK ; Aamir Ali SYED ; Amjad PARVAIZ
Annals of Coloproctology 2022;38(3):223-229
Purpose:
Laparoscopic approach to colonic tumor requires skill set and resources to be established as routine standard of care in most centers around the world. It presents particular challenge in country like Pakistan due to economic constrain and lack of teaching and training opportunities available for surgeons to be trained to deliver such service. The aim of this study is to look into changing practice of our institution from conventional approach of open to laparoscopic surgery for right colon cancer.
Methods:
Consecutive patients between January 2010 to December 2018 who presented to Shaukat Khanum Memorial Cancer Hospital and Research Centre with diagnosis of right colon (cecum, ascending and transverse colon) adenocarcinoma and underwent surgical resections were included in this study.
Results:
A total of 230 patients with adenocarcinoma of the right colon underwent curative resections during the study period. Of these, 141 patients (61.3%) underwent laparoscopic surgery while open resection was performed in 89 patients (38.7%). Five-year disease-free survival (DFS) of patients with American Joint Committee on Cancer (AJCC) stage III (80.9% vs. 54.8%, P = 0.021) was significantly better if these patients underwent laparoscopic surgery while a trend toward better DFS (96.7% vs. 84.1%, P = 0.111) was also observed in AJCC stage II patients, although this difference was not significant.
Conclusion
This study demonstrates the adoption of a laparoscopic approach for right colon cancer over 10 years. With a standardized approach and using the principle of oncological surgery, we incorporated this in our minimally invasive surgery practice at our institution.
10. Syzygium aromaticum ethanol extract reduces AlCl
Sanila AMBER ; Touqeer AHMED ; Saadia ZAHID ; Syed ALI SHAH ; Syed ALI SHAH
Asian Pacific Journal of Tropical Medicine 2018;11(2):123-130
Objective: To investigate the neuroprotective effects of Syzygium aromaticum (S. aromaticum) extract (500 mg/kg) on AlCl