1.Determining genetic diversity of Microbiology prevalent G and P genotype of Bovine Rotavirus A from neonatal calves of Gujarat, India
Akash GOLAVIYA ; Rafiyuddin MATHAKIYA ; Subhash JAKHESARA ; Prakash KORINGA
Journal of Veterinary Science 2024;25(4):e55-
Objectives:
This study examined the prevalence and molecular characterization of BRVA in neonatal calves in Gujarat, India.
Methods:
Sixty-nine diarrheic fecal samples were collected and subjected to various molecular methods of BRVA detection, isolation, and characterization.
Results:
The latex agglutination test (LAT), electropherotyping (RNA-PAGE), and reverse transcription polymerase chain reaction revealed positivity rates of 39.13%, 20.30%, and 37.70%, respectively. RNA-PAGE identified 11 bands with a 4:2:3:2 migration pattern, indicative of the segmented genome of BRVA. BRVA was successfully isolated from LATpositive samples, with 26 samples exhibiting clear cytopathic effects upon passage in MA-104 cell lines. Genotyping identified G10 as the predominant G genotype, with P[11] genotypes comprising 76.92% of the isolates. The most common G/P combination was G10P[11], highlighting its zoonotic potential.
Conclusions
and Relevance: These findings underscore the importance of molecular detection and genotyping for effective vaccine development. This study provides crucial insights into the prevalent G and P genotypes of BRVA in Gujarat, India, aiding in the development of targeted control measures.
2.Determining genetic diversity of Microbiology prevalent G and P genotype of Bovine Rotavirus A from neonatal calves of Gujarat, India
Akash GOLAVIYA ; Rafiyuddin MATHAKIYA ; Subhash JAKHESARA ; Prakash KORINGA
Journal of Veterinary Science 2024;25(4):e55-
Objectives:
This study examined the prevalence and molecular characterization of BRVA in neonatal calves in Gujarat, India.
Methods:
Sixty-nine diarrheic fecal samples were collected and subjected to various molecular methods of BRVA detection, isolation, and characterization.
Results:
The latex agglutination test (LAT), electropherotyping (RNA-PAGE), and reverse transcription polymerase chain reaction revealed positivity rates of 39.13%, 20.30%, and 37.70%, respectively. RNA-PAGE identified 11 bands with a 4:2:3:2 migration pattern, indicative of the segmented genome of BRVA. BRVA was successfully isolated from LATpositive samples, with 26 samples exhibiting clear cytopathic effects upon passage in MA-104 cell lines. Genotyping identified G10 as the predominant G genotype, with P[11] genotypes comprising 76.92% of the isolates. The most common G/P combination was G10P[11], highlighting its zoonotic potential.
Conclusions
and Relevance: These findings underscore the importance of molecular detection and genotyping for effective vaccine development. This study provides crucial insights into the prevalent G and P genotypes of BRVA in Gujarat, India, aiding in the development of targeted control measures.
3.Determining genetic diversity of Microbiology prevalent G and P genotype of Bovine Rotavirus A from neonatal calves of Gujarat, India
Akash GOLAVIYA ; Rafiyuddin MATHAKIYA ; Subhash JAKHESARA ; Prakash KORINGA
Journal of Veterinary Science 2024;25(4):e55-
Objectives:
This study examined the prevalence and molecular characterization of BRVA in neonatal calves in Gujarat, India.
Methods:
Sixty-nine diarrheic fecal samples were collected and subjected to various molecular methods of BRVA detection, isolation, and characterization.
Results:
The latex agglutination test (LAT), electropherotyping (RNA-PAGE), and reverse transcription polymerase chain reaction revealed positivity rates of 39.13%, 20.30%, and 37.70%, respectively. RNA-PAGE identified 11 bands with a 4:2:3:2 migration pattern, indicative of the segmented genome of BRVA. BRVA was successfully isolated from LATpositive samples, with 26 samples exhibiting clear cytopathic effects upon passage in MA-104 cell lines. Genotyping identified G10 as the predominant G genotype, with P[11] genotypes comprising 76.92% of the isolates. The most common G/P combination was G10P[11], highlighting its zoonotic potential.
Conclusions
and Relevance: These findings underscore the importance of molecular detection and genotyping for effective vaccine development. This study provides crucial insights into the prevalent G and P genotypes of BRVA in Gujarat, India, aiding in the development of targeted control measures.
4.Determining genetic diversity of Microbiology prevalent G and P genotype of Bovine Rotavirus A from neonatal calves of Gujarat, India
Akash GOLAVIYA ; Rafiyuddin MATHAKIYA ; Subhash JAKHESARA ; Prakash KORINGA
Journal of Veterinary Science 2024;25(4):e55-
Objectives:
This study examined the prevalence and molecular characterization of BRVA in neonatal calves in Gujarat, India.
Methods:
Sixty-nine diarrheic fecal samples were collected and subjected to various molecular methods of BRVA detection, isolation, and characterization.
Results:
The latex agglutination test (LAT), electropherotyping (RNA-PAGE), and reverse transcription polymerase chain reaction revealed positivity rates of 39.13%, 20.30%, and 37.70%, respectively. RNA-PAGE identified 11 bands with a 4:2:3:2 migration pattern, indicative of the segmented genome of BRVA. BRVA was successfully isolated from LATpositive samples, with 26 samples exhibiting clear cytopathic effects upon passage in MA-104 cell lines. Genotyping identified G10 as the predominant G genotype, with P[11] genotypes comprising 76.92% of the isolates. The most common G/P combination was G10P[11], highlighting its zoonotic potential.
Conclusions
and Relevance: These findings underscore the importance of molecular detection and genotyping for effective vaccine development. This study provides crucial insights into the prevalent G and P genotypes of BRVA in Gujarat, India, aiding in the development of targeted control measures.
5.Tissue-specific Temporal Exome Capture Revealed Muscle-specific Genes and SNPs in Indian Buffalo (Bubalus bubalis)
Jakhesara J. SUBHASH ; Ahir B. VIRAL ; Padiya B. KETAN ; Koringa G. PRAKASH ; Rank N. DHARAMSHIBHAI ; Joshi G. CHAITANYA
Genomics, Proteomics & Bioinformatics 2012;10(2):107-113
Whole genome sequencing of buffalo is yet to be completed,and in the near future it may not be possible to identify an exome (coding region of genome) through bioinformatics for designing probes to capture it.In the present study,we employed in solution hybridization to sequence tissue specific temporal exomes (TST exome) in buffalo.We utilized cDNA prepared from buffalo muscle tissue as a probe to capture TST exomes from the buffalo genome.This resulted in a prominent reduction of repeat sequences (up to 40%) and an enrichment of coding sequences (up to 60%).Enriched targets were sequenced on a 454 pyro-sequencing platform,generating 101,244 reads containing 24,127,779 high quality bases.The data revealed 40,100 variations,of which 403 were indels and 39,218 SNPs containing 195 nonsynonymous candidate SNPs in protein-coding regions.The study has indicated that 80% of the total genes identified from capture data were expressed in muscle tissue.The present study is the first of its kind to sequence TST exomes captured by use of cDNA molecules for SNPs found in the coding region without any prior sequence information of targeted molecules.