1.Evaluation of the Seeplex(R) Meningitis ACE Detection Kit for the Detection of 12 Common Bacterial and Viral Pathogens of Acute Meningitis.
So Youn SHIN ; Kye Chul KWON ; Jong Woo PARK ; Ji Myung KIM ; So Young SHIN ; Sun Hoe KOO
Annals of Laboratory Medicine 2012;32(1):44-49
BACKGROUND: Bacterial meningitis is an infectious disease with high rates of mortality and high frequency of severe sequelae. Early identification of causative bacterial and viral pathogens is important for prompt and proper treatment of meningitis and for prevention of life-threatening clinical outcomes. In the present study, we evaluated the value of the Seeplex Meningitis ACE Detection kit (Seegene Inc., Korea), a newly developed multiplex PCR kit employing dual priming oligonucleotide methods, for diagnosing acute meningitis. METHODS: Analytical sensitivity of the kit was studied using reference strains for each pathogen targeted by the kit, while it's analytical specificity was studied using the human genome DNA and 58 clinically well-identified reference strains. For clinical validation experiment, we used 27 control cerebrospinal fluid (CSF) samples and 78 clinical CSF samples collected from patients at the time of diagnosis of acute meningitis. RESULTS: The lower detection limits ranged from 101 copies/microL to 5x101 copies/microL for the 12 viral and bacterial pathogens targeted. No cross-reaction was observed. In the validation study, high detection rate of 56.4% was obtained. None of the control samples tested positive, i.e., false-positive results were absent. CONCLUSIONS: The Seeplex Meningitis ACE Detection kit showed high sensitivity, specificity, and detection rate for the identification of pathogens in clinical CSF samples. This kit may be useful for rapid identification of important acute meningitis-causing pathogens.
Acute Disease
;
Adolescent
;
Adult
;
Aged
;
Child
;
Child, Preschool
;
Female
;
Humans
;
Infant
;
Male
;
Meningitis/*diagnosis/microbiology/virology
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Middle Aged
;
*Polymerase Chain Reaction
;
RNA, Bacterial/cerebrospinal fluid
;
RNA, Viral/cerebrospinal fluid
;
Reagent Kits, Diagnostic
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Sensitivity and Specificity
;
Sequence Analysis, RNA
2.The primary mediastinal liposarcoma with effusion.
Gu Tae WON ; Jin Hyun PARK ; Uk Kyun HONG ; Jae Kab LEE ; Suk Joong YONG ; Kye Chul SHIN ; So Young JIN ; Soon Hee JUNG
Tuberculosis and Respiratory Diseases 1991;38(1):65-69
No abstract available.
Liposarcoma*
3.Body mass index, waist-to-hip ratio, and metabolic syndrome as predictors of middle-aged men's health.
Jung Hyun PARK ; In Chang CHO ; Yoo Seok KIM ; Soon Ki KIM ; Seung Ki MIN ; So Shin KYE
Korean Journal of Urology 2015;56(5):386-392
PURPOSE: There is no reported evidence for an anthropometric index that might link obesity to men's sexual health. We evaluated the ability of an anthropometric index and the symptom scores of five widely used questionnaires to detect men's health problems. We determined the predictive abilities of two obesity indexes and other clinical parameters for screening for lower urinary tract symptoms and sexual dysfunction in middle-aged men. MATERIALS AND METHODS: A total of 1,910 middle-aged men were included in the study. Participants underwent a detailed clinical evaluation that included recording the symptom scores of five widely used questionnaires. The participants' body mass index and waist-to-hip ratio were determined. Serum prostate-specific antigen, urinalysis, testosterone, estimated glomerular filtration rate, evaluation of metabolic syndrome, and transrectal ultrasonography were assessed. RESULTS: By use of logistic regression analysis, age and total prostate volume were independent predictors of lower urinary tract symptoms. Metabolic syndrome was the only significant negative predictive factor for chronic prostatitis symptoms. Age and metabolic syndrome were independent predictive factors for erectile dysfunction. Waist-to-hip ratio had a statistically significant value for predicting erectile dysfunction. CONCLUSIONS: Our data showed that total prostate volume is a significant predictor of lower urinary tract symptoms, and central obesity has predictive ability for erectile dysfunction. Metabolic syndrome was the only significant negative predictive factor for chronic prostatitis-like symptoms. The management of correctable factors such as waist-to-hip ratio and metabolic syndrome may be considered preventive modalities against the development of men's health problems.
Aging
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*Body Mass Index
;
Erectile Dysfunction/*diagnosis
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Humans
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Logistic Models
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Lower Urinary Tract Symptoms/diagnosis
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Male
;
*Men's Health
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Metabolic Syndrome X/*physiopathology
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Middle Aged
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Obesity
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Organ Size
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Prognosis
;
Prostate/*ultrasonography
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Prostate-Specific Antigen/blood
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Prostatitis/*diagnosis
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Testosterone/blood
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Ultrasound, High-Intensity Focused, Transrectal
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*Waist-Hip Ratio
4.he Performance of the Newly Released Automated Chemistry Analyzer Rx Imola.
So Youn SHIN ; Kye Chul KWON ; Sun Hoe KOO ; Jong Woo PARK ; Chi Seon KO
Journal of Laboratory Medicine and Quality Assurance 2007;29(2):217-223
BACKGROUND: The Rx Imola (Randox, UK) is newly released bench top - fully automated analyzer based on Window XP software with high-throughput (640 tests per hour with ISE) and continuous random access. We evaluated the performance of Rx Imola for the routine chemistry. METHODS: Repeatability (within-day precision), between-day precision, within-device precision, linearity, recovery rates and correlation were evaluated for 19 items including AST, ALT, ALP, GGT, total bilirubin, calcium, phosphorus, albumin, total protein, BUN, creatinine, glucose, amylase, total cholesterol, triglyceride, HDL, LDH, CK and uric acid. Commercialized quality control materials and patient's sera were used. For correlation study, 747-100 (HITACHI, Japan) and VITROS 950 (Ortho-Clinical Diagnostics, USA) were used as comparative analyzers. RESULTS: Coefficients of variation (CVs) of all items in repeatability and between-day precision study were below 5%. The linearities were statistically acceptable (R2>0.99) for all items. The recovery rates ranged from 95.7 to 105.3%. The comparison study showed high correlation between Rx Imola and 747-100 or VITROS 950. Correlation coefficients of all items were above 0.99 except HDL and albumin. CONCLUSIONS: This study showed satisfactory results in precision, linearity, recovery rates and comparison studies of Rx Imola. It was expected to be useful for routine chemistry analysis and back up, because of high performance, easy handling and small size.
Amylases
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Bilirubin
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Calcium
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Chemistry*
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Cholesterol
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Creatinine
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Glucose
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Phosphorus
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Quality Control
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Statistics as Topic
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Triglycerides
;
Uric Acid
5.A Case of Rifampin Induced Hemolytic Anemia Combined with Thrombocytopenia and Acute Renal Failure.
Chiseon KO ; Kye Chul KWON ; Jong Woo PARK ; Sun Hoe KOO ; So Yeon SHIN
Korean Journal of Blood Transfusion 2007;18(1):56-60
A 35 year old woman was admitted to the hospital owing to her nausea, vomiting, oliguria and petechia with re-administration of rifampin. Laboratory tests were performed and they showed a hemoglobin level of 8.6 g/dL, a leukocyte count of 7,660/microliter, a platelet count of 1,000/microliter, a blood urea nitrogen level of 92.3 mg/dL and a creatinine level of 10.6 mg/dL. The Direct Coombs' test and anti-platelet antibody test were positive. Hemolytic anemia combined with thrombocytopenia and acute renal failure related to rifampin was suspected. We proved the formation of immune complex with anti-rifampin antibody and rifampin by in vitro testing. Hemolytic anemia combined with thrombocytopenia and acute renal failure after treatment with rifampin is a rare condition. We report here on such a case along with a brief review of the related literature.
Acute Kidney Injury*
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Adult
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Anemia, Hemolytic*
;
Antigen-Antibody Complex
;
Blood Urea Nitrogen
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Coombs Test
;
Creatinine
;
Female
;
Humans
;
Leukocyte Count
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Nausea
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Oliguria
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Platelet Count
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Rifampin*
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Thrombocytopenia*
;
Vomiting
6.Two Cases of Acute Respiratory Distress Syndrome with Pulmonary Hemorrhage Induced by Injection of Silicone at Perineum.
So Eun KANG ; Suk Joong YONG ; Won Yeon LEE ; Pyo Jin SHIN ; Mi Hae KIM ; Hark Cheon PARK ; Myung Sook SHIM ; Hyun Min CHOI ; Kye Chul SHIN ; Mi Ae LIM ; Kyung Moo YANG
Tuberculosis and Respiratory Diseases 2001;51(2):166-172
Silicone fluid is a biomaterial widely used in modern cosmetic procedures because there are few side effects, considerable chemical stability and predictable physical properties. However, many local and systemic adverse reactions have reported. In particular some serious pulmonary complications have been reported such as pulmonary thromboembolism, acute respiratory distress syndrome with some cases leading to mortality. Most of the serious complicated cases were induced by an illegal silicone fluid injection. We experienced two cases of acute respiratory distress syndrome with pulmonary hemorrhage induced by an illegal silicone fluid injection. The patients were 41 & 51 year old women, who complained of dyspnea. The chest X-ray and HRCT scan findings showed a bilateral ground glass attenuation on the bilateral dependent portion of the upper and middle lung zone. The patients clinical symptoms and the radiologic and other laboratory findings were compatible with acute respiratory distress syndrome induced by the silicon fluid injection. Here we report two cases of acute respiratory distress syndrome with pulmonary hemorrhage induced by an illegal silicone injection with a review of the relevant literature.
Dyspnea
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Female
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Glass
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Hemorrhage*
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Humans
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Lung
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Mortality
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Perineum*
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Pulmonary Embolism
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Respiratory Distress Syndrome, Adult*
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Silicon*
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Silicones*
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Thorax
7.Characteristics of aac(6')-Ib-cr Gene in Extended-Spectrum beta-Lactamase-Producing Escherichia coli and Klebsiella pneumoniae Isolated from Chungnam Area.
So Youn SHIN ; Kye Chul KWON ; Jong Woo PARK ; Jeong Hoon SONG ; Young Hyun KO ; Ji Youn SUNG ; Hae Won SHIN ; Sun Hoe KOO
The Korean Journal of Laboratory Medicine 2009;29(6):541-550
BACKGROUND: Concomitant quinolone resistance in extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae is a crucial problem in the clinical management of infections. In foreign countries, the fluoroquinolone acetylating aminoglycoside-(6)-N-acetyltransferase (aac[6']-Ib-cr) gene, a novel plasmid-mediated quinolone resistance determinant has been reported to occur in conjunction with qnr. We aim to investigate the prevalence and characteristics of concomitant aac(6')-Ib-cr and qnr expression in ESBL-producing Escherichia coli and Klebsiella pneumoniae in Korea. METHODS: Between December 2007 and April 2008, we collected 60 and 69 clonally unrelated non-repetitive clinical isolates of ESBL-producing E. coli and K. pneumoniae, respectively. We studied the expressions of 11 types of ESBL-encoding genes, 4 types of 16s rRNA methylase genes; rmtA, rmtB, rmtC and armA, 3 types of qnr genes; qnrA, qnrB, qnrS and aac(6')-Ib. The presence of aac(6')-Ib-cr variants was detected by sequencing. The involvement of integrons was studied using multiplex PCR and sequencing of gene-cassette arrays. Conjugation experiments were performed to confirm plasmid-mediated resistance and the relationships among coharbored genes. RESULTS: We observed a high prevalence of the cr variant (61.1%) of aac(6')-Ib, and the prevalence of this variant in qnr and aac(6')-Ib-coharboring isolates (67.4%) was higher than in qnr-negative isolates (51.7%). The high prevalence of the cr variant was significantly related to the high minimum inhibitory concentrations (MICs) of ciprofloxacin, tobramycin, and amikacin and indicated the statistically significant roles of qnrB, qnrS, rmtA, and rmtB in quinolone and aminoglycoside resistance. CONCLUSIONS: The aac(6')-Ib-cr variants were widespread and showed significant relation to the high-level quinolone and aminoglycoside resistance in ESBL-producing E. coli and K. pneumoniae.
Acetyltransferases/*genetics
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Drug Resistance, Bacterial/*genetics
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Escherichia coli/enzymology/*genetics
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Genes, Bacterial/genetics
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Klebsiella pneumoniae/enzymology/*genetics
;
Microbial Sensitivity Tests
;
Phenotype
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Republic of Korea
;
Sequence Analysis, DNA
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beta-Lactamases/*biosynthesis
8.A Case of Identification of Marker Chromosome by comparative genomic hybridization and fluorescence in situ hybridization.
So Young SHIN ; Young Mi JEON ; Chun Hwa IHM ; Moon Hee KIM ; Sun Hoe KOO ; Jong Woo PARK ; Kye Chul KWON ; Yun Mi PARK
Korean Journal of Clinical Pathology 2001;21(4):310-313
Comparative genomic hybridization (CGH) has been used to identify deletions and amplifications, particularly in neoplastic samples. CGH provides a new possibility searching genomes for imbalances of genetic material. We described the combined use of CGH and fluorescence in situ hybridization (FISH) to identify the origin of a marker chromosome in a child with mental retardation. Giemsa banding of metaphases from cultured lymphocytes showed a marker chromosome. The Karyotype was 47,XX,+mar. CGH revealed that the additional material originated from 15q. FISH confirmed this finding with whole chromosome paint for chromosome 15 and with a D15S10 (15q11-13) probe. This case demonstrates the efficient use of CGH and confirmatory FISH for the identification of chromosomal material of unknown origin.
Child
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Chromosomes, Human, Pair 15
;
Comparative Genomic Hybridization*
;
Fluorescence*
;
Genome
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Humans
;
In Situ Hybridization*
;
Intellectual Disability
;
Karyotype
;
Lymphocytes
;
Metaphase
;
Paint
9.Characterization of Class 1 Integrons in Metallo-beta-lactamase-producing Pseudomonas aeruginosa.
Ji Youn SUNG ; Sun Hoe KOO ; Kye Chul KWON ; Jong Woo PARK ; Chi Seon KO ; So Youn SHIN ; Jeong Hoon SONG
Korean Journal of Clinical Microbiology 2009;12(1):17-23
BACKGROUND: The genes of metallo-beta-lactamase (MBL), a powerful carbapenemase, are carried as a part of the mobile gene cassettes inserted into integrons playing an important role in rapid dissemination of antibiotic resistance genes among bacterial isolates. In this study, we investigated carbapenemase genes and class 1 integrons integrated into the gene cassettes in imipenem-non susceptible P. aeruginosa. METHODS: From July 2006 to March 2008, 81 consecutive, non-duplicate, imipenem-non susceptible P. aeruginosa were isolated at Chungnam National University Hospital in Chungcheong province of Korea. The modified Hodge and double disk synergy tests were conducted for the screening of carbapenemase and MBL production, respectively, and PCR and DNA sequencing were performed for the detection of carbapenemase genes and class 1 integron gene cassettes. We also employed the repetitive element sequence-based (Rep)-PCR method for an epidemiologic study. RESULTS: MBLs were detected in 13.6% (11/81) of imipenem-non susceptible P. aeruginosa. Ten isolates were found to carry blaIMP-1, whereas 1 isolate was found to carry a blaVIM-2. All of the IMP-1-producing strains harbored 4.0 kb class 1 integron containing chloramphenicol, aminoglycoside, and beta-lactam- resistant genes. However, blaIMP-1 was not detected at class 1 integron. A 2.5 kb class 1 integron harboring blaVIM-2 was detected in a VIIM-2- producing strain. One identical pattern was observed in ten IMP-1 producing strains. CONCLUSION: IMP-1 producing P. aeruginosa strains are currently distributed throughout Chungcheong province of Korea. In particular, all of the strains harbored class 1 integrons containing variant antibiotic resistance gene cassettes.
Bacterial Proteins
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beta-Lactamases
;
Chloramphenicol
;
Drug Resistance, Microbial
;
Integrons
;
Korea
;
Mass Screening
;
Polymerase Chain Reaction
;
Pseudomonas
;
Pseudomonas aeruginosa
;
Sequence Analysis, DNA
;
Sprains and Strains
10.High Frequency of Genetic Alterations in Non-small Cell Lung Cancer Detected by Multi-target Fluorescence In Situ Hybridization.
Ji Un KANG ; Sun Hoe KOO ; Kye Chul KWON ; Jong Woo PARK ; So Youn SHIN ; Jin Man KIM ; Sung Su JUNG
Journal of Korean Medical Science 2007;22(Suppl):S47-S51
Detection of genetic alterations could provide a tool as an adjuvant for the diagnosis of non-small cell lung cancer (NSCLC) and to define patients at risk for early relapse. In this study, a multi-target fluorescence in situ hybridization (FISH) assay was conducted to investigate the correlation between the alterations of chromosomes, including 5p15.2, 6p11.1-q11, 7p12, and 8q24.12-q24.13 (LaVysion Test), and clinicopathological variables, and to clarify the potential of the multi-target FISH assay in 37 NSCLC. The most notable finding was the higher frequency of a gain in chromosome 5p15.2 in early-stage (I+IIa) lung cancers. The frequency of the gain was 81.3% (16/22) in stage I tumors. The frequencies of gains in 6p11.1-q11 and 8q24.12-q24.13 were 61.5% (8/13) and 84.6% (11/13) in stage IIIa cancers, as compared with lower frequencies in stage I tumors at 25.0% and 31.3%, respectively. There was also a significant difference in the histological type. Our results suggest that a gain in 6p11.1-q11 and 8q24.12-q24.13 plays an important role in tumor progression and is associated with histological differentiation. On the other hand, gene amplification in the 5p region was one of the most consistent alterations in early-stage lung cancer, and thus a series of genes in the critical 5p15.2 region might potentially associated with the development of lung cancer.
Aged
;
Carcinoma, Non-Small-Cell Lung/diagnosis/*genetics/pathology
;
*Chromosome Aberrations
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Chromosomes, Human, Pair 5/genetics
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Chromosomes, Human, Pair 6/genetics
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Chromosomes, Human, Pair 8/genetics
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Female
;
Gene Amplification
;
Humans
;
In Situ Hybridization, Fluorescence
;
Lung Neoplasms/diagnosis/*genetics/pathology
;
Male
;
Middle Aged
;
Neoplasm Staging
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Tumor Markers, Biological/genetics