1.Modulation of gene expression dynamics by co-transcriptional histone methylations.
Hyeonju WOO ; So Dam HA ; Sung Bae LEE ; Stephen BURATOWSKI ; TaeSoo KIM
Experimental & Molecular Medicine 2017;49(4):e326-
Co-transcriptional methylations of histone H3 at lysines 4 and 36, highly conserved methyl marks from yeast to humans, have profound roles in regulation of histone acetylation. These modifications function to recruit and/or activate distinct histone acetyltransferases (HATs) or histone deacetylases (HDACs). Whereas H3K4me3 increases acetylation at promoters via multiple HATs, H3K4me2 targets Set3 HDAC to deacetylate histones in 5' transcribed regions. In 3' regions of genes, H3K36me2/3 facilitates deacetylation by Rpd3S HDAC and slows elongation. Despite their important functions in deacetylation, no strong effects on global gene expression have been seen under optimized or laboratory growth conditions. Instead, H3K4me2-Set3 HDAC and Set2-Rpd3S pathways primarily delay the kinetics of messenger RNA (mRNA) and long noncoding RNA (lncRNA) induction upon environmental changes. A majority of mRNA genes regulated by these pathways have an overlapping lncRNA transcription either from an upstream or an antisense promoter. Surprisingly, the distance between mRNA and lncRNA promoters seems to specify the repressive effects of the two pathways. Given that co-transcriptional methylations and acetylation have been linked to many cancers, studying their functions in a dynamic condition or during cancer progression will be much more important and help identify novel genes associated with cancers.
Acetylation
;
Gene Expression*
;
Histone Acetyltransferases
;
Histone Deacetylases
;
Histones*
;
Humans
;
Kinetics
;
Methylation*
;
RNA, Long Noncoding
;
RNA, Messenger
;
Yeasts
2.A Case of Sjogren's Syndrome Associated with Common Variable Immunodeficiency.
San Ha KANG ; Hye Jeong CHO ; Hee Jin HONG ; So Dam HONG ; Bo Hye KIM ; Sang Yoon JUNG ; Jin Jung CHOI
Korean Journal of Medicine 2015;89(2):254-258
Common variable immunodeficiency (CVID) is a heterogeneous group of primary immune deficiencies in adults characterized by hypogammaglobulinemia, recurrent bacterial infections, and a higher incidence of autoimmune diseases. More than 25% of CVID patients also have autoimmune diseases such as autoimmune hemolytic anemia, immune thrombocytopenic purpura, rheumatoid arthritis, and systemic lupus erythematosus. However, the pathogenesis of autoimmunity in CVID remains obscure. We report a 56-year-old woman with CVID and Sjogren's syndrome. In addition to a long history of recurrent upper respiratory infections, acute gastroenteritis, and cellulitis, she has also suffered from persistent xerostomia and xerophthalmia for the past 10 years. Serologic studies revealed hypogammaglobulinemia (low levels of IgG, IgA, and IgM in serum) and the presence of anti-Ro antibodies, and salivary scintigraphy indicated salivary gland involvement. These findings led to a diagnosis of CVID and Sjogren's syndrome, which was treated by monthly intravenous immunoglobulin therapy.
Adult
;
Agammaglobulinemia
;
Anemia, Hemolytic, Autoimmune
;
Antibodies
;
Arthritis, Rheumatoid
;
Autoimmune Diseases
;
Autoimmunity
;
Bacterial Infections
;
Cellulitis
;
Common Variable Immunodeficiency*
;
Diagnosis
;
Female
;
Gastroenteritis
;
Humans
;
Immunization, Passive
;
Immunoglobulin A
;
Immunoglobulin G
;
Immunoglobulin M
;
Incidence
;
Lupus Erythematosus, Systemic
;
Middle Aged
;
Purpura, Thrombocytopenic, Idiopathic
;
Radionuclide Imaging
;
Respiratory Tract Infections
;
Salivary Glands
;
Sjogren's Syndrome*
;
Xerophthalmia
;
Xerostomia
3.A Case of Severe Peripheral Polyneuropathy Occurring after Entecavir Treatment in a Hepatitis B Patient.
Ji Hyun SONG ; Si Yeon KIM ; Jae Kyoung SHIN ; So Dam HONG ; Kyu Sung RIM ; Ha Na PARK ; Joo Ho LEE ; Yun Bin LEE ; Seung Hun OH ; Seong Gyu HWANG
The Korean Journal of Gastroenterology 2016;67(4):216-219
Entecavir (Baraclude®) is an oral antiviral drug used for the treatment of HBV. Entecavir is a reverse transcriptase inhibitor which prevents the HBV from multiplying. Most common adverse reactions caused by entecavir are headache, fatigue, dizziness, and nausea. Until now, there has been no report of peripheral neuropathy as a side effect associated with entecavir treatment. Herein, we report a case of peripheral neuropathy which probably occurred after treatment with entecavir in a hepatitis B patient. The possibility of the occurrence of this side effect should be carefully taken into consideration when a patient takes a high dose of entecavir for a long period of time or has risk factors for neuropathy at the time of initiating entecavir therapy.
Administration, Oral
;
Antiviral Agents/*adverse effects/therapeutic use
;
Brain/diagnostic imaging
;
Drug Therapy, Combination
;
Duloxetine Hydrochloride/therapeutic use
;
Glucocorticoids/therapeutic use
;
Guanine/adverse effects/*analogs & derivatives/therapeutic use
;
Hepatitis B, Chronic/drug therapy
;
Humans
;
Male
;
Middle Aged
;
Polyneuropathies/*diagnosis/drug therapy/etiology
;
Prednisolone/therapeutic use
;
Pregabalin/therapeutic use
;
Tomography, X-Ray Computed
4.Clinical and Genetic Risk Factors Associated With the Presence of Lupus Nephritis
Jung-Min SHIN ; Dam KIM ; Young-Chang KWON ; Ga-Young AHN ; Jiyoung LEE ; Youngho PARK ; Yeon-Kyung LEE ; Tae-Han LEE ; Dae Jin PARK ; Yeo-Jin SONG ; Eunji HA ; Kwangwoo KIM ; So-Young BANG ; Chan-Bum CHOI ; Hye-Soon LEE ; Sang-Cheol BAE
Journal of Rheumatic Diseases 2021;28(3):150-158
Objective:
To elucidate whether clinical features and the weighted genetic risk score (wGRS) were associated with the presence of lupus nephritis (LN).
Methods:
We retrospectively divided patients with systemic lupus erythematosus (SLE, n=1,078) into biopsy-proven LN (n=507) and non-LN groups (non-LN, n=571). Baseline clinical features, serologic markers, and the wGRS were collected. The wGRS was calculated from 112 non-human leukocyte antigen (non-HLA) loci and HLA-DRβ1 amino acid haplotypes for SLE. Associations among clinical features, wGRS, and the presence of LN were identified.
Results:
In the multivariate analysis, patients with LN were younger at diagnosis (odds ratio [OR]=0.97, p<0.001), had more pleuritis (OR=2.44, p<0.001) and pericarditis (OR=1.62, p=0.029), had a higher detection rate of anti-double stranded deoxyribonucleic acid (anti-dsDNA antibodies, OR=2.22, p<0.001), anti-Smith antibodies (anti-Sm antibodies, OR=1.70, p=0.002), low level of complement (OR=1.37, p=0.043) and absence of antiphospholipid antibodies (aPL antibodies, OR=1.60, p=0.002), and had higher wGRS (OR=1.16, p=0.012). Mediation analysis suggested that anti-Sm antibodies and low complement could be mediators in the relationship between high wGRS and the presence of LN.
Conclusion
Onset age, pleuritis, pericarditis, several serologic markers, and wGRS were associated with the presence of LN. Anti-Sm antibodies and low complement appeared to mediate the indirect relationship between wGRS and the presence of LN.
5.Korean Guideline for the Prevention and Treatment of Glucocorticoid-induced Osteoporosis.
So Young PARK ; Hyun Sik GONG ; Kyoung Min KIM ; Dam KIM ; Ha Young KIM ; Chan Hong JEON ; Ji Hyeon JU ; Shin Seok LEE ; Dong Ah PARK ; Yoon Kyoung SUNG ; Sang Wan KIM
Journal of Bone Metabolism 2018;25(4):195-211
BACKGROUND: To develop guidelines and recommendations to prevent and treat glucocorticoid (GC)-induced osteoporosis (GIOP) in Korea. METHODS: The Korean Society for Bone and Mineral Research and the Korean College of Rheumatology have developed this guideline based on Guidance for the Development of Clinical Practice Guidelines ver. 1.0 established by the National Evidence-Based Healthcare Collaborating Agency. This guideline was developed by adapting previously published guidelines, and a systematic review and quality assessment were performed. RESULTS: This guideline applies to adults aged ≥19 years who are using or plan to use GCs. It does not include children and adolescents. An initial assessment of fracture risk should be performed within 6 months of initial GC use. Fracture risk should be estimated using the fracture-risk assessment tool (FRAX) after adjustments for GC dose, history of osteoporotic fractures, and bone mineral density (BMD) results. All patients administered with prednisolone or an equivalent medication at a dose ≥2.5 mg/day for ≥3 months are recommended to use adequate calcium and vitamin D during treatment. Patients showing a moderate-to-high fracture risk should be treated with additional medication for osteoporosis. All patients continuing GC therapy should undergo annual BMD testing, vertebral X-ray, and fracture risk assessment using FRAX. When treatment failure is suspected, switching to another drug should be considered. CONCLUSIONS: This guideline is intended to guide clinicians in the prevention and treatment of GIOP.
Adolescent
;
Adult
;
Bone Density
;
Calcium
;
Child
;
Denosumab
;
Evidence-Based Practice
;
Glucocorticoids
;
Humans
;
Korea
;
Miners
;
Osteoporosis*
;
Osteoporotic Fractures
;
Prednisolone
;
Rheumatology
;
Risk Assessment
;
Teriparatide
;
Treatment Failure
;
Vitamin D
6.Clinical and Genetic Risk Factors Associated With the Presence of Lupus Nephritis
Jung-Min SHIN ; Dam KIM ; Young-Chang KWON ; Ga-Young AHN ; Jiyoung LEE ; Youngho PARK ; Yeon-Kyung LEE ; Tae-Han LEE ; Dae Jin PARK ; Yeo-Jin SONG ; Eunji HA ; Kwangwoo KIM ; So-Young BANG ; Chan-Bum CHOI ; Hye-Soon LEE ; Sang-Cheol BAE
Journal of Rheumatic Diseases 2021;28(3):150-158
Objective:
To elucidate whether clinical features and the weighted genetic risk score (wGRS) were associated with the presence of lupus nephritis (LN).
Methods:
We retrospectively divided patients with systemic lupus erythematosus (SLE, n=1,078) into biopsy-proven LN (n=507) and non-LN groups (non-LN, n=571). Baseline clinical features, serologic markers, and the wGRS were collected. The wGRS was calculated from 112 non-human leukocyte antigen (non-HLA) loci and HLA-DRβ1 amino acid haplotypes for SLE. Associations among clinical features, wGRS, and the presence of LN were identified.
Results:
In the multivariate analysis, patients with LN were younger at diagnosis (odds ratio [OR]=0.97, p<0.001), had more pleuritis (OR=2.44, p<0.001) and pericarditis (OR=1.62, p=0.029), had a higher detection rate of anti-double stranded deoxyribonucleic acid (anti-dsDNA antibodies, OR=2.22, p<0.001), anti-Smith antibodies (anti-Sm antibodies, OR=1.70, p=0.002), low level of complement (OR=1.37, p=0.043) and absence of antiphospholipid antibodies (aPL antibodies, OR=1.60, p=0.002), and had higher wGRS (OR=1.16, p=0.012). Mediation analysis suggested that anti-Sm antibodies and low complement could be mediators in the relationship between high wGRS and the presence of LN.
Conclusion
Onset age, pleuritis, pericarditis, several serologic markers, and wGRS were associated with the presence of LN. Anti-Sm antibodies and low complement appeared to mediate the indirect relationship between wGRS and the presence of LN.