1.Differential expression of circulating miRNAs in Parkinson’s disease patients: Potential early biomarker?
Siti Aishah Sulaiman ; Nor Ilham Ainaa Muhsin ; Ahmad Rasyadan Arshad ; Wan Fahmi Wan Mohamad Nazarie ; Rahman Jamal ; Norlinah Mohamed Ibrahim ; Nor Azian Abdul Murad
Neurology Asia 2020;25(3):319-329
Background & Objective: Circulating microRNAs (miRNAs) expressions have been suggested as
potential biomarkers for Parkinson’s Disease (PD). Identification of early biomarkers for PD is
important and crucial as PD symptoms occur at a late stage. Hence, these biomarkers could be used
in molecular diagnosis for early detection. We therefore examined and compared the expression of
circulating miRNAs between PD patients and controls. We also compared the miRNAs expression
between early-onset PD (EOPD) and late-onset PD (LOPD). Methods: RNA was extracted from
the plasma of EOPD (onset age <50 years; n=14), LOPD (onset age < 60 years; n=14) and healthy
controls (n=11). The miRNAs expression was determined using the Affymetrix GeneChip microarray.
Differential analysis was performed using the R software. Significantly differentiated miRNAs were
subsequently analyzed for functional enrichment and biological pathway using the FunRich v1.3
software based on the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. The Omics.net
was used to determine the predicted target mRNAs of these miRNAs, and their interactions, based
on the five most differentially expressed miRNAs. Results: In total, 273 miRNAs were upregulated
in PD patients compared to controls. The most significant miRNAs were hsa-miR-301a-3p, 100-5p,
140-5p, 486-3p, 143-3p (fold change ranging from 11.2 – 32.0). A total of 140 circulating miRNAs
were differentially expressed in EOPD compared to LOPD. Five of these miRNAs (one upregulated
miRNA (hsa-miR-29b-3p) and four downregulated miRNAs (hsa-miR-297, 4462, 1909-5p and 346)
belonged exclusively to the EOPD patients. The predicted gene targets of these miRNAs involved in
dopaminergic synapse regulation, crucial to the pathogenesis of PD.
Conclusion: Circulating miRNAs differ between PD patients and controls, and between EOPD and
LOPD patients. A validation study with a larger and more diverse multi-ethnic population should be
conducted to confirm our results.
2.Development and validation of a new vision screening test algorithm for public use mobile application- A pilot study
Siti Nor Aishah Abdul Rahman ; Abdul Mutalib ; Asma Hassan ; Atif Amin Baig ; Nyi Nyi Naing ; Syaratul Emma Hashim ; Muhammad Aiman Hau
The Medical Journal of Malaysia 2020;75(6):685-690
algorithm for mobile application and perform a pilot study todetermine its validity and reliability as a tool for vision testin the community.Methods: A simple visual acuity test algorithm in the form ofa single letter E display was designed as the optotype fordevelopment of a mobile application. The standardisedoptotype is presented at random to test visual acuity forcorresponding level of 3/60, 6/60, 6/18, and 6/12. The finalresult is auto-generated based on the classification of theWHO for visual impairment and blindness. The Snellen chartwas used as the gold standard to determine its validity whilefive different users were involved to determine its inter-raterreliability. A pilot study was performed between April tillNovember 2019, in the Universiti Sultan Zainal AbidinMedical Centre (UMC) at Kuala Nerus and MoorisOptometrist Centre at Marang, Terengganu. A total of 279participants aged four years old and above were involved inthis study. Results: The highest sensitivity was found at the vision levelcut-off point of 6/12 with the percentage of 92.7% and 86.8%for the right and left eye, respectively. The specificity wasmore than 89% for all vision levels in both eyes. TheKrippendorff’s alpha value for the inter-rater reliability was0.87 and 0.83.Conclusion: The relatively high level of validity andreliability obtained indicate the feasibility of using thedesigned optotype to develop a valid and reliable mobile appfor vision test. The app can be used to screen vision by non-medical persons, at anytime and anywhere to help improvepublic awareness and capability to correctly determine theirvisual status.
3.Penjujukan Eksom Bagi Penyakit Jarang Jumpa, Mullerian Agenesis dan Agenesis Anotectal anomaly: Kajian Kes (Whole Exome Sequencing of a Rare Disease, Mullerian Agenesis and Anorectal Anomaly: A Case Report)
Siti Aishah Sulaiman ; Nor Azian Abdul Murad ; Yock Ping Chow ; Muhammad-Redha Abdullah-Zawawi ; Zam Zureena Mohd Rani ; Siti Nurmi Nasir ; Salwati Shuib ; Dayang Anita Abdul Aziz ; Hana Azhari ; Sharifah Azween Syed Omar ; Zarina Abdul Latiff ; Rahman Jamal
Malaysian Journal of Health Sciences 2024;22(No.2):18-38
Mullerian agenesis or Mayer-Rokitansky-Kuster-Hauser Syndrome (MRKH) Type-II is a
congenital defect in the Mullerian duct that results in the absence of a uterus in women. The
aetiology of this syndrome is unknown and has been considered a sporadic genetic disease.
MRKH, together with anorectal anomaly, is an extremely rare condition and has only been
reported in a few cases without any information on genetic analysis. This study investigated the mutational profile of a girl diagnosed with MRKH and anorectal anomalies with
rectovaginal fistula. The whole exome sequencing (WES) trio-genetic analysis of a 5-year-old
Malaysian girl diagnosed with MRKH (having anorectal anomaly with rectovaginal fistula)
was performed together with her normal parents, using the Ion AmpliSeq Exome RDY kit
(ThermoFisher Scientific, USA). Data were analysed using Torrent Suite v.5.0.4 and annotated
using ANNOVAR. Single nucleotide polymorphisms (SNPs) with an allele frequency >0.01
were excluded, and the remaining variants were filtered based on de novo mutations,
autosomal recessive, and autosomal recessive genetic traits. Related genes were analysed by
biological pathway analysis (g:Profiler) and protein-protein interaction (HIPPIE v.2.3,
STRING v.11.5, dan GeneMANIA). A total of 36 mutations were identified, and two of them,
the LHX5 (p.P358Q), inherited from the father, and CFTR (p.R1158X), inherited from the
mother. There were 28 de-novo mutations from 28 genes. All genes were involved in 27
biological processes that connected with 23 interactions, and are likely to cause MRKH
syndrome in this patient.