1.Segmenting lung fields in serial chest radiographs using both population and patient-specific shape statistics.
Yong-hong SHI ; Fei-hu QI ; Hong-xia LUAN ; Guo-rong WU
Chinese Journal of Medical Instrumentation 2006;30(4):264-255
This paper presents a new deformable model using both population-based and patient-specific shape statistics to segment lung fields from serial chest radiographs. First, a modified scale-invariant feature transform (SIFT) local descriptor is used to characterize the image features in the vicinity of each pixel, so that the deformable model deforms in a way that seeks for the region with similar SIFT local descriptors; second, the deformable model is constrained by both population-based and patient-specific shape statistics. At first, population-based shape statistics plays an leading role when the number of serial images is small, and gradually, patient-specific shape statistics plays a more and more important role after a sufficient number of segmentation results on the same patient have been obtained. The proposed deformable model can adapt to the shape variability of different patients, and obtain more robust and accurate segmentation results.
Algorithms
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Artificial Intelligence
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Computer Simulation
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Data Interpretation, Statistical
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Humans
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Lung
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diagnostic imaging
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Lung Diseases
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diagnosis
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Models, Statistical
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Pattern Recognition, Automated
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methods
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Radiographic Image Enhancement
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methods
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Radiographic Image Interpretation, Computer-Assisted
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methods
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Radiography, Thoracic
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methods
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Reproducibility of Results
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Sensitivity and Specificity
2.Study on Polyethylene Glycol Modified Porcine Hemoglobin Using Computer Modeling
Yuan-Dong HU ; Jian-Shi BAI ; Ke-Fang JIAO ; Feng-Rong BU ; Song LI
Journal of Experimental Hematology 2001;9(3):263-267
The structure analysis of porcine hemoglobin alphabeta dimer and the calculation of solvent accessible surface of the amino acids showed the epsilon-amino groups of the lysine are suitable for modification by polyethylene glycol (PEG). The modification of the lysine residues will not affect the carring oxygen capacity of Hb. Three types of linker have been designed to connect PEG and porcine hemoglobin. The lysines between porcine and bovine hemoglobin (pHb and bHb) are highly conserved, but the solvent accessible surface of conserved lysines are different. These suggested that the properties of homologous proteins are similar in pHb and bHb, but the characteristic derived from the homology analysis will be deviated from the actual status. The results of molecular dynamics simulation suggested that the chemical modified porcine hemoglobin would be no immunogenicity.
3.A diabetic model for liver oxidant damage in mice.
Shi-Rong JIAO ; Bo WANG ; Cheng-Yu HUANG ; Shuang YU ; Wen-Ya YIN
Chinese Journal of Preventive Medicine 2007;41 Suppl():115-118
OBJECTIVETo observe the liver oxidant damage for diabetic model in mice.
METHODSMale kunming mice were feed with high fat dietary for a week and then were randomly divided into two groups by weight, with 10 mice in each group. One group was induced by small dose streptozotocin (STZ) and obtained STZ-induced diabetic mice, and the other group was regarded as the control. Both of the two groups were feed with high fat dietary. After 6 weeks, the activities of enzymes, such as superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GSH-PX) and nitric oxide synthase (NOS) were measured. Glutathione (GSH), maleic dialdehyde (MDA), nitric oxide (NO) levels in the liver and the liver viscera quotient were also measured. Liver histological manifestations were observed.
RESULTSIn diabetes group, there was a significant decrease in body weight, and the activities of GSH, CAT, and NOS decreased significantly (t value were 5.370, 10.639, 5.235, 3.089, respectively, P < 0.01). While, the liver viscera quotient, the levels of MDA, GSH-PX and NO increased remarkably (t value were -6.246, -2.728, -2.660, -4.924, respectively, P < 0.01 or P < 0.05). The significant difference was not observed in SOD between the two groups (t value was -0.405, P > 0.05). The liver histological damages were observed in diabetes group, light microscope observation showed hepatocytes swelling, ballooned changing and fatty droplets clustering.
CONCLUSIONThe oxidant damage might exist in the liver diabetic model in mice.
Animals ; Diabetes Mellitus, Experimental ; metabolism ; pathology ; Liver ; metabolism ; pathology ; Male ; Mice ; Mice, Inbred Strains ; Nitric Oxide ; metabolism ; Oxidative Stress ; Superoxide Dismutase ; metabolism
4.Genome-wide analysis of DNA methylation changes in the rat ovary after prenatal exposure to di-(2-ethylhexyl)-phthalate.
Xin XIE ; Yu GAO ; Yan ZHANG ; Yu DING ; Rong SHI ; Yi-jun ZHOU ; Ying TIAN
Chinese Journal of Preventive Medicine 2012;46(9):840-844
OBJECTIVETo study the effects of prenatal exposure to Di-(2-ethylhexyl)-phthalate (DEHP) on genome-wide epigenetic alterations in ovary of adult offspring rat.
METHODSPregnant Wistar rats were randomly treated with DEHP (1000 mg/kg) or con oil at 12 - 17 days upon pregnance. DNA methylation changes in the ovary for the adult offsprings which were 70 days old were detected by Rat DNA methylation promoter plus CpG island arrays CpG island chip. Gene ontology (GO) method was performed to analyze the function of genes which were significantly different between exposed group and control group. Gene Igfbp1 (insulin-like growth factor binding protein 1) and Itga3 (integrin alpha 3) were randomly selected and the methylation status were verified by bisulfite genomic sequencing (BSP).
RESULTSThe methylation status were significantly different between exposed and control group in 406 genes (71 genes as hypermethylation and 335 genes as hypomethylation) (P < 0.05). GO analysis revealed that molecular transducer activity, cell part, cell, cellular process, multicellular organismal process, response to stimulus, biological regulation, regulation of biological process, reproduction, reproductive process, and rhythmic process were involved. The sequencing results were consistent with the data obtained by chips.
CONCLUSIONThis study provides evidence that prenatal exposure of DEHP may be associated with methylation changes on the genes in the rat ovary. Genes related to reproductive process have highly significant methylation changes, which may shed new light on mechanisms of reproductive and developmental toxicity after prenatal exposure to DEHP.
Animals ; CpG Islands ; genetics ; DNA Methylation ; Diethylhexyl Phthalate ; toxicity ; Female ; Genome ; Maternal Exposure ; Ovary ; pathology ; Pregnancy ; Prenatal Exposure Delayed Effects ; Rats ; Rats, Wistar
5. The effects of prenatal exposure to brominated diphenyl ethers-209 to the influence of male offspring rats hippocampus BDNF potein expression and its mechanism of action
Rong SHI ; Xin XIE ; Yu GAO ; Yijun ZHOU ; Yan ZHANG ; Limei CHEN ; Ying TIAN
Chinese Journal of Industrial Hygiene and Occupational Diseases 2017;35(9):652-655
Objective:
The effects of prenatal exposure to brominated diphenyl ethers
6.Correlation between level of metallic elements in urine and childhood acute leukemia.
Sha ZHU ; Yan ZHANG ; Yu GAO ; Xiao-jin WANG ; Tao CHEN ; You YANG ; Rong SHI ; Ping JIN ; Ying TIAN ; Xiao-ming SHEN
Chinese Journal of Preventive Medicine 2011;45(2):146-149
OBJECTIVETo explore the relation between the level of metallic elements in urine and childhood acute leukemia.
METHODSA total of 71 patients under 15 years old who were newly diagnosed with acute leukemia between September 2007 and August 2008 without Downs' syndrome or other tumors, and 113 gender- and age-matched controls without tumors or congenital diseases were enrolled for the case-control study. The general data and potential risk factors were obtained by questionnaires. Inductively coupled plasma mass spectrometry (ICP-MS) was used to determine the metal concentrations in urine, which was collected randomly before chemotherapy. Logistic regression model was performed for univariate and multivariate analysis.
RESULTSThe questionnaire showed that there was significant difference in the proportion of children whose mothers had taken iron supplements during or 3 months before pregnancy between case group and control group, which was 28.2% (20/71) and 14.2% (16/113) respectively (Wald χ(2) = 5.438, P = 0.02). Univariate logistic regression analysis showed that levels of vanadium, manganese, iron, cobalt, copper, arsenic, and barium in urine from case group were all higher than those of control group with significant difference. The median values for vanadium in urine from case and control groups were 5.39 and 3.04 ng/mg creatinine (Wald χ(2) = 9.03, P < 0.05); the median values for manganese were respectively 4.46 and 2.44 ng/mg creatinine (Wald χ(2) = 10.57, P < 0.05); the median values for iron were separately 58.69 and 14.09 ng/mg creatinine (Wald χ(2) = 13.41, P < 0.05); the median values for cobalt were respectively 0.98 and 0.77 ng/mg creatinine (Wald χ(2) = 4.46, P < 0.05); the median values for copper were 61.17 and 10.90 ng/mg creatinine (Wald χ(2) = 8.15, P < 0.05); the median values for arsenic were respectively 55.93 and 36.11 ng/mg creatinine (Wald χ(2) = 4.57, P < 0.05); and the median values for barium were 8.55 and 2.87 ng/mg creatinine (Wald χ(2) = 4.82, P < 0.05). Multivariate logistic regression analysis showed that the level of iron in urine had a significantly positive relation with the incidence of childhood acute leukemia (OR = 1.009, 95%CI = 1.002 - 1.016).
CONCLUSIONThe level of iron in urine might be related to the occurrence of childhood acute leukemia, but its specific role needs further investigation.
Acute Disease ; Adolescent ; Case-Control Studies ; Child ; Child, Preschool ; Female ; Humans ; Infant ; Iron ; urine ; Leukemia ; etiology ; Male ; Metals ; urine
7.A case-control study on correlation of pesticide exposure with childhood acute leukemia.
Yan ZHANG ; Sha ZHU ; Yu GAO ; Xiao-jin WANG ; Tao CHEN ; You YANG ; Guo-quan WANG ; Guo-hua HU ; Rong SHI ; Ping JIN ; Ying TIAN
Chinese Journal of Preventive Medicine 2011;45(1):41-46
OBJECTIVETo evaluate the correlation of pesticide exposure with childhood acute leukemia.
METHODSAn exploratory case-control study was conducted among childhood acute leukemia patients under 15 years old in Shanghai, China. From January 1st, 2006 to December 31st, 2008, a total of 80 newly diagnosed acute leukemia patients were recruited from Shanghai Children's Medical Center for the case group. Another 96 age-matched patients who visited the hospital for health examination, pediatric treatment or osteological therapy excluding hematological system diseases and neoplastic disease, were recruited for the control group. A questionnaire survey was conducted in both groups; and a 30 - 40 ml random urine sample was collected from each participant. Five types of organophosphorus pesticide metabolites was then detected among the samples, using Gas Chromatography with Flame Spectrophotometry.
RESULTSAccording to result of the questionnaire survey, more participants (55.0% (44/80)) in case group than in the control group (33.3% (32/96)) reported using mosquitocidal, which might increase the risk of childhood acute leukemia (OR = 2.444; 95%CI: 1.326 - 4.506). At the same time, the detection showed that the concentration (median) of organophosphate metabolites diethyl phosphate, dimethyl phosphate, dimethyl thiophosphate, diethyl thiophosphate and diethyl dithiophosphate in case group were 0.0682, 0.0082, 0.0183, 0.0233, 0.4259 µg/g Cr, which were all significantly higher than in control group (0.0865, 0.0025, 0.0112, 0.0123, 0.1207 µg/g Cr) except the concentration of diethyl phosphate (Z = -1.081, P = 0.279). The difference showed statistical significance (Z = -5.752, -2.800, -3.316, -8.120, P < 0.05).
CONCLUSIONPesticide exposure may be one of the risk factors for childhood acute leukemia.
Acute Disease ; Adolescent ; Case-Control Studies ; Child ; Child, Preschool ; Environmental Exposure ; adverse effects ; Female ; Humans ; Infant ; Infant, Newborn ; Leukemia ; etiology ; Male ; Maternal Exposure ; Pesticides ; adverse effects ; Pregnancy ; Risk Factors
8.Relationship between parental exposure to chemicals and risk of childhood acute leukemia.
Rong SHI ; Yu GAO ; Yan ZHANG ; Yi-jin GAO ; Sha ZHU ; Xiao-jin WANG ; Ping JIN ; Ying TIAN
Chinese Journal of Industrial Hygiene and Occupational Diseases 2013;31(6):413-417
OBJECTIVETo investigate the relationship between parental exposure to chemicals and the risk of childhood acute leukemia.
METHODSAn exploratory case-control study was conducted among 201 new cases of childhood acute leukemia under 15 years old who went to 3 children's hospitals in Shanghai, China from January 1, 2009 to December 31, 2010, as well as 201 sex- and age-matched children (as controls) who went to the child health care clinic or department of orthopedics in the above hospitals. A survey was performed by face-to-face interviews with children's mothers.
RESULTSThe risk factors for childhood acute leukemia might include maternal exposure to total chemicals (diesel oil, gasoline, paints, insecticides, pesticides, herbicides, and chemical fertilizers) from 3 months before pregnancy to the end of pregnancy (OR = 2.9, 95%CI = 1.1 ∼ 7.8), paternal exposure to insecticides (OR = 10.1, 95%CI = 1.2 ∼ 82.9) and chemical fertilizers (OR = 9.5, 95%CI = 1.1 ∼ 79.6) within 3 months before pregnancy, maternal working experiences in agriculture and forestry before pregnancy (OR = 8.4, 95%CI = 1.4 ∼ 50.2) and in spinning, leather processing, decoration, and vehicle repair before pregnancy (OR = 3.0, 95%CI = 1.2 ∼ 7.9) and during pregnancy (OR = 3.2, 95%CI = 1.1 ∼ 9.6), and paternal working experiences in agriculture and forestry (OR = 9.6, 95%CI = 2.1-44.8) and in spinning, leather processing, decoration, and vehicle repair (OR = 2.3, 95%CI = 1.1-5.0).
CONCLUSIONParental exposure to chemicals may increase the risk of childhood acute leukemia in their offspring.
Acute Disease ; Child ; Child, Preschool ; China ; Female ; Humans ; Leukemia ; etiology ; Male ; Maternal Exposure ; adverse effects ; Paternal Exposure ; adverse effects ; Pregnancy ; Risk Factors ; Surveys and Questionnaires
9.Risk factors related to hospital mortality in patients with isolated traumatic acute subdural haematoma: analysis of 308 patients undergone surgery.
Heng-li TIAN ; Shi-wen CHEN ; Tao XU ; Jin HU ; Bo-ying RONG ; Gan WANG ; Wen-wei GAO ; Hao CHEN
Chinese Medical Journal 2008;121(12):1080-1084
BACKGROUNDAcute subdural haematoma (ASDH) is a common traumatic brain injury with a relatively high mortality rate. However, few studies have examined the factors predicting the outcome of isolated traumatic ASDH. This clinical study examined the hospital mortality and analyzed the risk factors for mortality in patients treated surgically for isolated traumatic ASDH.
METHODSWe collected 308 consecutive patients who underwent neurosurgery for isolated traumatic ASDH between January 1999 and December 2007 and used multivariate Logistic regression analysis to evaluate the influence of 11 clinical variables on hospital mortality.
RESULTSThe overall hospital mortality was 21.75% (67/308). Age (OR = 1.807), preoperative Glasgow Coma Score (OR = 0.316), brain herniation (OR = 2.181) and the time from trauma to decompression (OR = 1.815) were independent predictors of death, while no independent association was observed between hospital mortality and haematoma volume, midline shift, acute brain swelling or brain herniation duration, although these variables were correlated with hospital mortality in univariate analyses.
CONCLUSIONSThis study identified the risk factors for hospital mortality in patients who underwent surgical treatment for isolated traumatic ASDH. An increased risk of death occurs in patients who are over 50 years of age and have lower preoperative Glasgow Coma Scores, the presence of brain herniation and a long interval between trauma and decompression. The findings should help clinicians determine management criteria and improve survival.
Adult ; Aged ; Aged, 80 and over ; Female ; Hematoma, Subdural, Acute ; mortality ; pathology ; surgery ; Hospital Mortality ; Humans ; Male ; Middle Aged ; Retrospective Studies ; Risk Factors ; Trauma Severity Indices ; Treatment Outcome
10.JAK2 V617F positive essential thrombocythemia developing in a patient with CD5⁻ chronic lymphocytic leukemia.
Ju WEI ; Chun WANG ; You-Wen QIN ; Jun ZHU ; Yang-Rong GAO ; Qi CAI ; Shi-Ke YAN
Chinese Medical Journal 2012;125(11):2076-2079
Coexistence of chronic lymphocytic leukemia (CLL) and essential thrombocythemia (ET) in a patient is extremely rare, with only 10 cases reported thus far in literature. This paper describes a 94-year-old male having atypical B-CLL with CD5⁻ (CD5⁻) phenotype and ET. In this patient, we performed interphase fluorescence in situ hybridization (FISH) analysis which revealed 13q14.3 deletion in 31% of B-lymphocyte nuclei and RB1 deletion in 27% of B-lymphocyte nuclei, but not in neutrophils and T-lymphocytes. Furthermore, we identified JAK2 V617F mutation in the peripheral blood nucleated cells and neutrophils, but not in the B- and T-lymphocyte populations. Therefore, it was concluded that the occurrence of CD5− B-CLL and ET in this patient was pathogenically independent.
Aged, 80 and over
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CD5 Antigens
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metabolism
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Humans
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In Situ Hybridization
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Janus Kinase 2
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genetics
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Leukemia, Lymphocytic, Chronic, B-Cell
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genetics
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metabolism
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Male
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Mutation
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Thrombocythemia, Essential
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genetics
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metabolism