1.Study on relationship between serum cccDNA and liver damage in the patients with chronic HBV infection
Yaqin QIN ; Dengyun ZHAO ; Wei ZHENG ; Guizhang LIU ; Shengfang LI ; Xingming TANG ; Huan XIAN
Chinese Journal of Primary Medicine and Pharmacy 2009;16(11):1985-1986
Objective To explore the relationship between serum cccDNA and liver damage in the patients with chronic HBV infection.Methods Serum cccDNA,ALT of 156 patients with chronic HBV infection were measured,and pathology of liver tissue in 85 patients was detected.Results The positive rate of Serum cccDNA and ALT had no significant difference(P>0.05).Between pathology light,medium and severe group,S0_(~1) and S_(2~4) group,G_(0~1) and G_(2~4) group the serum cccDNA mean was significantly different(P<0.01).The positive rate of serum cccDNA was significantly different between the group of NAASC and ASC,CH,LC,HCC,and the group of ALT ≤40u/Land 40~80,80~400,≥400u/L(P<0.01).Conclusion Serum cccDNA and liver inflammation,fibrosis and ALT had no relevance,serum cccDNA with at a low level may be non-active,but should be excluded from serious liver diseases.
2.Analysis of genetics mechanism for the phenotypic diversity in a patient carrying a rare ring chromosome 9.
Shengfang QIN ; Xueyan WANG ; Yunxing LI ; Ping WEI ; Chun CHEN ; Lan ZENG
Chinese Journal of Medical Genetics 2016;33(1):71-75
OBJECTIVETo explore the genetics mechanism for the phenotypic variability in a patient carrying a rare ring chromosome 9.
METHODSThe karyotype of the patient was analyzed with cytogenetics method. Presence of sex chromosome was confirmed with fluorescence in situ hybridization. The SRY gene was subjected to PCR amplification and direct sequencing. Potential deletion and duplication were detected with array-based comparative genomic hybridization (array-CGH).
RESULTSThe karyotype of the patient has comprised 6 types of cell lines containing a ring chromosome 9. The SRY gene sequence was normal. By array-CGH, the patient has carried a hemizygous deletion at 9p24.3-p23 (174 201-9 721 761) encompassing 30 genes from Online Mendelian Inheritance in Man.
CONCLUSIONThe phenotypic variability of the 9p deletion syndrome in conjunct with ring chromosome 9 may be attributable to multiple factors including loss of chromosomal material, insufficient dosage of genes, instability of ring chromosome, and pattern of inheritance.
Chromosomes, Human, Pair 9 ; genetics ; Female ; Humans ; Infant ; Karyotype ; Male ; Ring Chromosomes ; Sex Chromosome Disorders ; genetics
3.Detection of chromosomal aneuploidies in spontaneous abortion samples by fluorescence in situ hybridization.
Ping WEI ; Yunxing LI ; Chun CHEN ; Lan ZENG ; Shengfang QIN ; Xueyan WANG ; Na XI
Chinese Journal of Medical Genetics 2015;32(2):229-232
OBJECTIVETo analyze 81 spontaneous abortion samples with fluorescence in situ hybridization (FISH).
METHODSChromosome 13, 21, 16, 22, 18, X and Y probes were used to detect the samples.
RESULTSFISH was successful in 80 cases (98.77%). Among these, 35 (43.75%) had an abnormal karyotype, which included 19 autosomal aneuploidies, 6 sex chromosome aneuploidies, 9 triploidies and 1 tetraploidy.
CONCLUSIONFISH is a rapid and easy method for detecting chromosomal aneuploidies in spontaneous abortion samples, and has a higher detection rate in early spontaneous abortion samples.
Abortion, Spontaneous ; diagnosis ; genetics ; Adult ; Aneuploidy ; Chromosome Aberrations ; Chromosomes, Mammalian ; genetics ; Female ; Fetal Diseases ; diagnosis ; genetics ; Humans ; In Situ Hybridization, Fluorescence ; Male ; Middle Aged ; Pregnancy ; Prenatal Diagnosis ; Young Adult
4.Assessment of a capsid-modified E1B 55-kDa protein-deficient adenovirus vector for tumor treatment
Xun YE ; Qin LU ; Yi ZHAO ; Zhen REN ; Xia MENG ; Shengfang GE ; Qihong QIU ; Yong TONG ; Andre LIEBER ; Min LIANG ; Fang HU ; Hongzhuan CHEN
Progress in Biochemistry and Biophysics 2005;32(12):1156-1164
ONYX-015 and H101 are E1B 55-kDa protein-deficient replicating C group adenoviruses that are currently in clinical trials as antitumor agents. However, their application in cancer gene therapy is limited by the native tropism of C group adenoviruses. This is in part due to low expression of the C group adenovirus receptor (coxsackievirus-adenovirus receptor, CAR) on malignant tumors. An H101-based chimeric virus vector containing sequences encoding the Ad35 fiber domain instead of the Ad5 fiber (H101-F35) was constructed. This modification allowed infection of tumor cells through CD46, a membrane protein over-expressed on tumors. The CAR and CD46 RNA expression was evaluated by RT-PCR method. H101-F35 conferred a stronger cytocidal effect than H101 and ONYX-015 in tumor cell lines that lacked CAR expression (MDA-MB-435 and MCF-7), while the cytocidal effect of H101-35, H101 and ONYX-015 was similar in high-level CAR expressing cancer cell lines (A549, NCI-H446, Hep3B, LNCaP, ZR-75-30 and Bcap-37). In an MDA-MB-435 xenograft mouse tumor model, tumor growth in mice receiving H101-F35 was significantly inhibited compared with mice injected with H101. These results suggest that the chimeric oncolytic adenovirus H101-F35 vector might be a useful candidate for gene therapy of cancer.
5.Genetic analysis of a 46,XY female with sex reversal due to duplication of NR0B1 gene.
Shengfang QIN ; Xueyan WANG ; Yunxing LI
Chinese Journal of Medical Genetics 2018;35(6):804-807
OBJECTIVE:
To explore the pathogenesis of a 46,XY female with sex reversal.
METHODS:
Peripheral blood lymphocytes of the patient were subjected to G-banding karyotype analysis. Sex chromosomes were analyzed with fluorescence in situ hybridization (FISH). SRY gene was analyzed by Sanger sequencing. The whole exome of the patient was subjected to next generation sequencing. Copy number variations (CNVs) of the NR0B1, SF1, SRY, SOX9 and WNT4 genes were validated by multiplex ligation-dependent probe amplification (MLPA).
RESULTS:
The patient had a 46,XY karyotype. FISH analysis showed that her sex chromosomes were X and Y. No mutation was found in the SRY gene, and no pathogenic mutation was detected in her exome. However, a duplication spanning approximately 67.31 kb encompassing the MAGEB1, MAGEB3, MAGEB4 and NR0B1 genes at Xp21, was predicted by software analysis. MLPA confirmed duplication of the NR0B1 gene in the patient and her mother.
CONCLUSION
A duplication fragment of Xp21 encompassing the NR0B1 gene in the 46,XY female with sex reversal is transmitted from her asymptomatic carrier mother. Attention should be paid towards the insidious nature and high morbidity of this duplication.
DAX-1 Orphan Nuclear Receptor
;
genetics
;
DNA Copy Number Variations
;
Female
;
Gene Duplication
;
Genes, sry
;
Gonadal Dysgenesis, 46,XY
;
genetics
;
Humans
;
In Situ Hybridization, Fluorescence
6.Clinical application of non-invasive prenatal testing for twin pregnancies
Jing WANG ; Xueyan WANG ; Xiao SONG ; Ping ZUO ; Shengfang QIN ; Na XI ; Chun CHEN
Chinese Journal of Medical Genetics 2024;41(1):14-19
Objective:To evaluate the feasibility of non-invasive prenatal testing (NIPT) for the screening of fetal chromosome aneuploidies in twin pregnancies.Methods:A total of 2 745 women with twin-pregnancies were subjected for NIPT screening. Chromosomal karyotyping and chromosomal microarray analysis (CMA) were carried out on amniotic fluid samples from those with a high risk for fetal chromosome aneuploidies, and the diagnosis and pregnancy outcome were followed up. The sensitivity, specificity, positive predictive value and false positive rate of the NIPT were calculated.Results:Compared with other chromosomal abnormalities, NIPT had a higher efficacy for trisomy 21 and sex chromosomal aneuploidy (SCA) in twin pregnancies (with sensitivity being 100%, 100%, and specificity being 99.93%, 99.9%, respectively). It is difficult to evaluate the efficacy for trisomies 18 and 13 due to the limited data. For chromosome microdeletions and microduplications spanning 15 ~ 21 Mb, NIPT also had a certain detection rate. Compared with women with natural conception, NIPT had a higher detection rate for those with twin pregnancies by assisted reproduction ( P < 0.05). Conclusion:It is feasible to use NIPT for the detection of chromosome aneuploidies in women with twin pregnancies.
7.Prenatal diagnosis of a case of Pallister-Killian syndrome.
Xiao SONG ; Xueyan WANG ; Guangming DENG ; Na XI ; Lan ZENG ; Chun CHEN ; Lingling SUN ; Shengfang QIN ; Yinghui REN
Chinese Journal of Medical Genetics 2020;37(7):771-773
OBJECTIVE:
To carry out G-banded chromosomal karyotyping and chromosomal microarray analysis (CMA) for a fetus featuring multiple malformations.
METHODS:
The fetus was found to have increased nuchal thickness, generalized edema, asymmetric lower limbs, tetralogy of Fallot, nasal bone anomaly and cleft palate. Following amniocentesis, G-band karyotyping and CMA were carried out.
RESULTS:
The fetus had a karyotype of 47,XX,+i(12)(p10) [14]/46,XX[6]. CMA has identified a 33.9 Mb duplication at 12p13.33-p11.1, which was suggestive of tetrasomy 12p.
CONCLUSION
Combined chromosomal karyotyping and CMA can delineate the origin of abnormal chromosomal fragments during prenatal diagnosis. The fetus was diagnosed with Pallister-Killian syndrome.
8.Study of GCN repeats of PHOX2B gene among individuals from southwest China and diagnosis of two patients with Congenital central hypoventilation syndrome
Shengfang QIN ; Mengling YE ; Yan YIN ; Jin WANG ; Xueyan WANG ; Zhuo ZHANG ; Ximin CHEN ; Mengjia YAN ; Yuxia HE ; Danying YI ; Qin DENG
Chinese Journal of Medical Genetics 2024;41(1):32-37
Objective:To study the trinucleotide repeats of GCN (GCA, GCT, GCC, GCG) encoding Alanine in exon 3 of the PHOX2B gene among healthy individuals from southwest China and two patients with Congenital central hypoventilation syndrome (CCHS). Methods:The number and sequence of the GCN repeats of the PHOX2B gene were analyzed by capillary electrophoresis, Sanger sequencing and cloning sequencing of 518 healthy individuals and two newborns with CCHS, respectively. Results:Among the 1036 alleles of the 518 healthy individuals, five alleles were identified, including (GCN) 7, (GCN) 13, (GCN) 14, (GCN) 15 and (GCN) 20. The frequency of the (GCN) 20 allele was the highest (94.79%). And five genotypes were identified, which included (GCN) 7/(GCN) 20, (GCN) 13/(GCN) 20, (GCN) 14/(GCN) 20, (GCN) 15/(GCN) 20, (GCN) 20/(GCN) 20. The homozygous genotypes were all (GCN) 20/(GCN) 20, and the carrier rate was 89.58%. Four GCN sequences of the (GCN) 20 homozygous genotypes were identified among the 464 healthy individuals. The GCN repeat numbers in the exon 3 of the PHOX2B gene showed no significant difference between the expected and observed values, and had fulfilled the, Hardy-Weinberg equilibrium. The genotypes of the two CCHS patients were (GCN) 20/(GCN) 25 and (GCN) 20/(GCN) 30, respectively. Conclusion:It is important to determine the GCN repeats and genotypic data of the exon 3 of the PHOX2B gene among the healthy individuals. The number of GCN repeats in 518 healthy individuals was all below 20. The selection of appropriate methods can accurately detect the polyalanine repeat mutations (PARMs) of the PHOX2B gene, which is conducive to the early diagnosis, intervention and treatment of CCHS.
9.Application of quantitative fluorescencet-PCR in the prenatal diagnosis of chromosomale aneuploidies.
Shengfang QIN ; Xueyan WANG ; Ximin CHEN ; Mengling YE ; Chun CHEN ; Ping WEI ; Lan ZENG ; Yi DENG ; Yunxing LI ; Na XI ; Xiao SONG ; Lingling SUN
Chinese Journal of Medical Genetics 2018;35(2):228-231
OBJECTIVETo assess the accuracy of quantitative fluorescence PCR(QF-PCR) for the detection of fetal chromosomal aneuploidies and its values for prenatal diagnosis.
METHODSQF-PCR and chromosomal karyotyping were used to analyze 6066 amniotic fluid samples derived from 6034 pregnant women.
RESULTSBoth QF-PCR and karyotyping analysis have detected 135 cases of fetal aneuploidies involving chromosomes 21, 18, 13, X, and Y. The QF-PCR assay was also successful in 67 cases for which amniotic fluid culture has failed. Furthermore, it has identified maternal cell contamination in 7 cases. By determining the consistency of short tandem repeat (STR) sites, the QF-PCR assay has identified 22 dizygotic twins among 32 twins with double chorions and double amniotic sacs. In 12 cases, it has signaled numerical chromosomal aberration by critical or partial abnormal values for the fluorescence peak area ratio, which were verified by karyotyping analysis as mosaicisms of chromosome aneuploidies.
CONCLUSIONThe QF-PCR can provide an useful supplement for chromosomal karyotyping and has an important role in rapid prenatal diagnosis.
Adolescent ; Adult ; Aneuploidy ; Female ; Fluorescence ; Humans ; Karyotyping ; Microsatellite Repeats ; Middle Aged ; Polymerase Chain Reaction ; methods ; Pregnancy ; Prenatal Diagnosis ; methods ; Young Adult
10.Clinical application of autologous hair follicle stem cell transplantation for hair growth
Yuwen CHEN ; Zhifang LU ; Shengfang ZHANG ; Jingwen LIANG ; Ri'an YU ; Ning QIN
Journal of Clinical Medicine in Practice 2024;28(20):32-38
Objective To observe the clinical efficacy of autologous hair follicle stem cell trans-plantation for hair restoration in patients with alopecia.Methods Ten patients with alopecia,inclu-ding five with androgenic alopecia and five with seborrheic alopecia,were selected from November 2022 to May 2023.They were treated with autologous hair follicle stem cell transplantation.Data be-fore treatment were used as the control group,and data after treatment were used as the study group.Follow-up was conducted for 3 to 8 months.The FPF scoring system was designed to collect data and evaluate the treatment effect.Results Nine patients had an improvement score of ≥7 points,and one patient had an improvement score of 2 points,with a treatment excellence rate of 90%(9/10).Compared with the total score of(2.81±0.92)points in the control group,the total score of the study group was(9.00±2.21)points,and the difference was statistically significant(P<0.001).Conclusion Autologous hair follicle stem cell transplantation for hair restoration is safe and effec-tive,and has a broad range of indications.