Objective To investigate the clinical efficacy of abdominal acupuncture in treating cervicogenic headache. Method Sixty-three patients meeting the diagnostic criteria of cervicogenic headache were allocated using a random number table: 33 cases to the abdominal acupuncture group and 30 cases to the acupuncture groups. The abdominal acupuncture group of patients received abdominal acupuncture and the acupuncture group of patients, body acupuncture. The therapeutic effects were compared between the two groups of patients after three courses of treatment. The headache index score was recorded at the same time. Result The total efficacy rate was 84.8% in the abdominal acupuncture group and 63.3% in the acupuncture group; there was a statistically significant difference between the two groups (P<0.05). The pain index score decreased significantly in both groups after treatment (P<0.05) and decreased more in the abdominal acupuncture group than in the acupuncture group (P<0.05). Conclusion Abdominal acupuncture is more effective than conventional acupuncture in treating cervicogenic headache. It is a new effective way to clinically treat cervicogenic headache.