1.Comparison of digital PCR platforms using the molecular marker
Cherl-Joon LEE ; Wonseok SHIN ; Minsik SONG ; Seung-Shick SHIN ; Yujun PARK ; Kornsorn SRIKULNATH ; Dong Hee KIM ; Kyudong HAN
Genomics & Informatics 2023;21(2):e24-
Assays of clinical diagnosis and species identification using molecular markers are performed according to a quantitative method in consideration of sensitivity, cost, speed, convenience, and specificity. However, typical polymerase chain reaction (PCR) assay is difficult to quantify and have various limitations. In addition, to perform quantitative analysis with the quantitative real-time PCR (qRT-PCR) equipment, a standard curve or normalization using reference genes is essential. Within the last a decade, previous studies have reported that the digital PCR (dPCR) assay, a third-generation PCR, can be applied in various fields by overcoming the shortcomings of typical PCR and qRT-PCR assays. We selected Stilla Naica System (Stilla Technologies), Droplet Digital PCR Technology (Bio-Rad), and Lab on an Array Digital Real-Time PCR analyzer system (OPTOLANE) for comparative analysis among the various droplet digital PCR platforms currently in use commercially. Our previous study discovered a molecular marker that can distinguish Hanwoo species (Korean native cattle) using Hanwoo-specific genomic structural variation. Here, we report the pros and cons of the operation of each dPCR platform from various perspectives using this species identification marker. In conclusion, we hope that this study will help researchers to select suitable dPCR platforms according to their purpose and resources.
2.Effect of stabilized rice bran-added high sucrose diet on glucose control in C57BL/6 mice.
Seung Min LEE ; Mal Shick SHIN ; Young Ran HEO
Journal of Nutrition and Health 2014;47(3):157-166
PURPOSE: Rice bran is a byproduct of the hulling of rice and contains a variety of bioactive components. Various studies have reported on the antioxidative, anticancer, immune-enhancing, and hypocholesterolemic effects of rice bran. However, few studies about the physiological activity of stabilized rice bran supplement on dietary intake of sugars is limited. The aim of this study was to investigate the effect of stabilized rice bran supplement on blood glucose in C57BL/6 mice fed a high sucrose diet. METHODS: Animals were randomly divided into three groups respectively, and were fed a normal diet (ND group), a high sucrose diet (HSD group) or a high sucrose diet containing 20% stabilized rice bran (HSD-SRB group) for 12 weeks. RESULTS: In the oral glucose tolerance test (OGTT), after seven weeks of feeding on the experimental diets, a significantly lower result was observed for HSD-SRB than for HSD at 30 and 60 minutes after oral administration in glucose solution (2 g/kg body weight). The incremental area under the curve (IAUC) of HSD-SRB was significantly lower than that of HSD. After 12 weeks, fasting blood glucose level of HSD-SRB was significantly lower than that of HSD. No significant difference in the serum insulin level was observed between HSD and HSD-SRB. However, HOMA-IR was significantly decreased in HSD-SRB compared to HSD. In addition, HOMA beta-cell was significantly increased in HSD-SRB com-pared to HSD. Triglyceride in liver of HSD-SRB was significantly lower than that of HSD. CONCLUSIONS: Feeding diets con-taining 20% rice bran improved insulin resistance and insulin secretion by decreasing triglyceride in liver. Thus, rice bran has a positive effect on glycemic control. In addition, the results are expected to be utilized as a basis for human study and development of food products with added rice bran.
Administration, Oral
;
Animals
;
Blood Glucose
;
Carbohydrates
;
Diet*
;
Fasting
;
Glucose Tolerance Test
;
Glucose*
;
Humans
;
Insulin
;
Insulin Resistance
;
Liver
;
Mice*
;
Sucrose*
;
Triglycerides
3.Operative Treatment of Tardy Ulnar Nerve Palsy.
Seung Hwan HAN ; Kyoo Ho SHIN ; Eung Shick KANG ; Soo Bong HAHN ; Ho Jung KANG
The Journal of the Korean Orthopaedic Association 2003;38(4):417-420
PURPOSE: To compare postoperative outcomes in tardy ulnar nerve palsy. MATERIALS AND METHODS: Between January 1997 and June 2000, 31 patients with the tardy ulnar nerve palsy, who have received operative treatment were divided into a traumatic group and an idiopathic group, and were analyzed with respect to preoperative factors, severity, nerve conduction velocity and postoperative result retrospectively. RESULTS: The traumatic group was composed of 17 cases and the idiopathic group of 14 cases. The average age was 35.7 years in the traumatic group, and 50.6 years in the idiopathic group, and this was statistically different (p=0.001). Other factors were not statistically different between the two groups. The improvement rate, which excluded mild degree patients, was 58.3% (7 in 12 cases) in the traumatic group and 90.9% (10 in 11cases) in the idiopathic group, and this was statistically different (p=0.048, ) and favorable in the idiopathic group. CONCLUSION: In cases of tardy ulnar nerve palsy of the elbow joint, the symptoms and the nerve conduction velocity were statistically no different between the two groups. The postoperative result in the traumatic elbow deformity patients was poorer than that in the idiopathic group.
Congenital Abnormalities
;
Elbow
;
Elbow Joint
;
Humans
;
Neural Conduction
;
Retrospective Studies
;
Ulnar Nerve*
;
Ulnar Neuropathies*
4.The Clinical Meanings of the Hippocampal Metabolites of Female Patients with Major Depressive Disorder.
Yoon Young NAM ; Chan Hyung KIM ; Seung Koo LEE ; Dong Pyo JANG ; Jae Jin KIM ; Woo Taek JEON ; Eui Jin SHIN ; Hong Shick LEE
Korean Journal of Psychopharmacology 2005;16(1):60-68
OBJECTIVE: Stress and elevated levels of glucocorticoids in patients with major depressive disorder (MDD) have been hypothesized to be associated with damage to the hippocampus. However the relationship between depression and hippocampal structure is unconfirmed. We investigated whether the chemical changes will occurr in the hippocampus of patients with MDD by using 1H-magnetic resonance spectroscopy (MRS) and explored the clinical meanings of hippocampal metabolites. METHODS: Fourteen female, right-handed patients with major depressive disorder and 12 healthy controls (age, sex, education and their dextrality matched) were included. We measured variables of time course of illness, severity of illness, levels of NAA, Cho and Cr in both hippocampus using 1HMRS. In addition, we performed neuropsychological tests in depressed subjects. RESULTS: There were no significant difference in the NAA/Cr, Cho/Cr, Cho/NAA between depressed and control subjects. In depressed subjects, significant negative correlations were observed between hippocampal NAA/Cr and duration of illness, duration of unmedication, severity of illness, respectively. Right hippocampal NAA/Cr was correlated with RCFT scores. CONCLUSION: These findings indicate damage to the hippocampus may not be a common feature in all depressed patients. However the results suggest that the illness burden and past treatment may influence hippocampal neurons and neuronal network in patients with MDD. Also, chemical changes in hippocampus may be associated with severity of illness and memory function.
Cost of Illness
;
Depression
;
Depressive Disorder, Major*
;
Education
;
Female*
;
Glucocorticoids
;
Hippocampus
;
Humans
;
Magnetic Resonance Spectroscopy
;
Memory
;
Neurons
;
Neuropsychological Tests
;
Spectrum Analysis
5.MRI Findings of Pericardial Fat Necrosis: Case Report.
Hyo Hyeok LEE ; Dae Shick RYU ; Sang Sig JUNG ; Seung Mun JUNG ; Soo Jung CHOI ; Dae Hee SHIN
Korean Journal of Radiology 2011;12(3):390-394
Pericardial fat necrosis is an infrequent cause of acute chest pain and this can mimic acute myocardial infarction and acute pericarditis. We describe here a patient with the magnetic resonance imaging (MRI) findings of pericardial fat necrosis and this was correlated with the computed tomography (CT) findings. The MRI findings may be helpful for distinguishing pericardial fat necrosis from other causes of acute chest pain and from the fat-containing tumors in the cardiophrenic space of the anterior mediastinum.
Adult
;
Contrast Media/diagnostic use
;
Diagnosis, Differential
;
Fat Necrosis/*diagnosis
;
Humans
;
Magnetic Resonance Imaging/*methods
;
Male
;
Pericardium/*pathology
6.B-cell Prolymphocytic Leukemia Involving Entire Female Genital Tract: A case report.
Hee Jung LEE ; Young Shin KIM ; Yong Gu KIM ; Kyung Ja HAN ; Kyo Young LEE ; Chang Suk KANG ; Sang In SHIM ; Jong Wook LEE ; Woong Shick AHN ; Soo Pyung AIM ; Seung Il KIM
Korean Journal of Pathology 1999;33(2):145-148
Prolymphocytic leukemia is a chronic lymphoproliferative disorder, characterized by prominent splenomegaly, prolymphocytes accounting for more than 55% of circulating lymphocytes, no significant peripheral lymphadenopathy and short term survival with terminal fatal multi-organ failure. We report a case of B-cell prolymphocytic leukemia in a 57-year-old woman who presented with easy bruising and arthritis for 1 year and low abdominal pain for 2 months. Physical examination revealed gingival hypertrophy and mild splenomegaly. On peripheral blood smears the leukocytes were markedly increased in number due to leukemic cells that count about 62% of leukocytes. The bone marrow aspiration smear and biopsy revealed diffuse infiltration of medium to large prolymphocytes having moderate amount of basophilic cytoplasm, round to oval nuclei with coarse chromatin, and prominent nucleoli. Abdominal pain aggravated despite chemotherapy, and pelvic computed tomography (CT) revealed a huge lobular pelvic mass which had increased in size on the follow-up CT. Total hysterectomy with bilateral adnexectomy was performed. Microscopic findings included massive infiltration of prolymphocytic cells in the uterus, upper vaginal wall, bilateral ovaries, and bilateral mesosalpinges. On immunohistochemistry, the leukemic cells showed B cell gamma light chain phenotype.
Abdominal Pain
;
Arthritis
;
B-Lymphocytes*
;
Basophils
;
Biopsy
;
Bone Marrow
;
Chromatin
;
Cytoplasm
;
Drug Therapy
;
Female*
;
Follow-Up Studies
;
Gingival Hypertrophy
;
Humans
;
Hysterectomy
;
Immunohistochemistry
;
Leukemia, Prolymphocytic
;
Leukemia, Prolymphocytic, B-Cell*
;
Leukocytes
;
Lymphatic Diseases
;
Lymphocytes
;
Lymphoproliferative Disorders
;
Middle Aged
;
Ovary
;
Phenotype
;
Physical Examination
;
Splenomegaly
;
Uterus
7.Antihypertensive Effects and Safety of Isradipine in Patients with Essential Hypertension.
Hye Jeon CHEONG ; Heung Sun KANG ; Chung Whee CHOUE ; Kwon Sam KIM ; Myung Shick KIM ; JUng Sang SONG ; Jong Hoa BAE ; Chung Kyun LEE ; Hyun Seung KIM ; Kee Ik KWON ; Sun Young SHIN
Korean Circulation Journal 1993;23(5):741-749
BACKGROUND: Antihypertensive treatment represents the modification of one of the most important risk factors on the development of cardiovascular, cerebrovascular and peripheral vascular disease. In cases of markedly developed atherosclerosis, reduction of blood pressure can improve the survival of patients by reducing the incidence and/or severity cerebrovascular events. We studied a new dihydropyridine calcium antagonist isradipine to evaluate the efficacy and safety in patients with essential hypertension. METHOD: After a placebo run-in phase of four weeks duration, 2.5mg isradipine once daily orally was administered for four weeks to 84 patients (48 males, 36 females ; mean age ; 50.8 years). And then 5.0mg isradipine once daily was administered for four weeks to 59 patients whose diastolic pressure did not decrease less than 90 mmHg. RESULTS: 1) At the end of 8 weeks of therapy, systolic and diastolic blood pressure were significantly reduced from 158.2+/-11.5/101.7+/-5.1mmHg in sitting, 156.8+/-13.7/102.3+/-5.6mmHg in standing to 138.3+/-13.8/90.1+/-6.7mmHg in sitting, 137.6+/-13.7/91.2+/-7.6mmHg in standing (p<0.001). And the effectiveness rate was 84.3% in sitting, 83.2% in standing and normalization rate below 90mmHg in diastolic pressure was 67.5% in siting and 61.5% in standing position. 2) The sitting and standing pulse rate did not change significantly (72.7+/-7.4beats/min at baseline vs. 73.4+/-6.8 beats/min after 8 weeks trial in sitting, 73.5+/-7.2beats/min at baseline vs. 74.1+/-7.2 beats/min after 8 weeks trial in standing). 3) The reduction of mean systolic and diastolic blood pressure at the end of 8 weeks were 19.9/11.6mmHg in sitting and 19.2/11.1mmHg in standing. 4) At the end of 8 weeks the successes of therapy in sitting were 67.5% in excellent, 10.8% in good, and 6.0% in fair response. 5) There was no serious side effect except mild symptom of 5 cases(5.9%) of exertional dyspnea and one episode of (1.2%) tachycardia. CONCLUSION: These results indicate that isradipine is effective and safe antihypertensive agent in the treatment of essential hypertension.
Atherosclerosis
;
Blood Pressure
;
Calcium
;
Dyspnea
;
Female
;
Heart Rate
;
Humans
;
Hypertension*
;
Incidence
;
Isradipine*
;
Male
;
Peripheral Vascular Diseases
;
Risk Factors
;
Tachycardia
8.CT Findings of Foreign Body Reaction to a Retained Endoloop Ligature Plastic Tube Mimicking Acute Appendicitis: A Case Report.
Jae Hong AHN ; Chae Hoon KANG ; Soo Jung CHOI ; Man Soo PARK ; Seung Mun JUNG ; Dae Shick RYU ; Dong Rock SHIN
Korean Journal of Radiology 2016;17(4):541-544
Many hospitals experience one or more retained surgical instrument events with risk of patient morbidity and medicolegal problems. Identification of retained surgical instrument is important. The radiologists should be familiar with imaging finding of retained surgical instrument. In a 62-year-old female with a retained plastic tube, localized peritoneal infiltration around air-containing tubular structure mimicked acute appendicitis on abdomen computed tomography (CT), one year after laparoscopic cholecystectomy. We reported CT findings of foreign body reaction related to retained Endoloop ligature plastic tube mimicking acute appendicitis.
Abdomen
;
Appendicitis*
;
Cholecystectomy, Laparoscopic
;
Female
;
Foreign Bodies*
;
Foreign-Body Reaction*
;
Humans
;
Ligation*
;
Middle Aged
;
Peritonitis
;
Plastics*
9.Fluid Collection in the Right Lateral Portion of the Superior Aortic Recess Mimicking a Right Mediastinal Mass: Assessment with Chest Posterior Anterior and MDCT.
Dong Rock SHIN ; Dae Shick RYU ; Man Soo PARK ; Seung Mun JUNG ; Jae Hong AHN ; Jong Hyeog LEE ; Soo Jung CHOI
Korean Journal of Radiology 2012;13(5):579-585
OBJECTIVE: We observed patients in whom the fluid collection in the right lateral portion of the superior aortic recess on computed tomography (CT) scans mimicked a right anterior mediastinal mass on chest PA radiographs. The purpose of this study was to assess chest PA and CT features of these patients. MATERIALS AND METHODS: All chest PA radiographs and CT scans in 9 patients were reviewed by two radiologists on a consensus basis; for the presence of pleural effusion, pulmonary edema and heart size on chest PA radiographs. For the portion of the fluid collection in the superior aortic recess (SAR), a connection between the right lateral portion of the SAR (rSAR) and posterior portion of the SAR (pSAR) on CT scans, and the distance between the right lateral margin of the rSAR and the right lateral margin of the superior vena cava. RESULTS: Fluid collection in the rSAR on CT scans caused a right anterior mediastinal mass or a bulging contour on chest PA radiographs in all women patients. All patients showed cardiomegaly, five patients had pleural effusion, and two patients had mild pulmonary edema. Further, eight patients showed a connection between the rSAR and the pSAR. CONCLUSION: The characteristic features of these patients are the right anterior mediastinal mass-like opacity due to fluid collection in the rSAR, are bulging contour with a smooth margin and cardiomegaly regardless of pulmonary edema on the chest PA radiographs, and fluid connection between the rSAR and the pSAR on CT scans.
Aged
;
Aged, 80 and over
;
Aorta, Thoracic/*radiography
;
Cardiomegaly/radiography
;
Contrast Media/diagnostic use
;
Diagnosis, Differential
;
Female
;
Humans
;
Mediastinal Diseases/*radiography
;
Middle Aged
;
Pleural Effusion/*radiography
;
Pulmonary Edema/*radiography
;
Radiography, Thoracic/*methods
;
Retrospective Studies
;
Tomography, X-Ray Computed/*methods
10.Fractures of the Wrist and Hand after Punching Injury.
Soo Bong HAHN ; Ju Young KIM ; Seung Yup SHIN ; Ho Jung KANG ; Jin Woo LEE ; Eung Shick KANG
The Journal of the Korean Orthopaedic Association 2004;39(6):700-706
PURPOSE: The purpose of this study was to describe the patterns and results of treatment of fractures of the hand and wrist after punching injury. MATERIALS AND METHODS: The authors retrospectively reviewed 91cases of fractures of the hand and wrist after punching injury in 67 patients from January 1998 to September 2002. The mean follow-up was 18 months. The mean age was 25.7 years old, ranging from 11 years old to 41 years old. The results were evaluated by modified criteria of Bruce and Maudsley. RESULTS: The most common fractures were metacarpal base fractures (42.9%), and the second most common fractures were distal metacarpal fractures (19.8%). Metacarpal base fractures were usually combined with dislocation of carpometacarpal joint, especially in the fourth and fifth metacarpal bone and single fifth metacarpal bone (29.7%). There were a few complications of limitation of motion (4 cases), pain (1 case), angular deformity of distal metacarpal bone (1 case), malunion of metacarpal shaft (2 cases) and nonunion of metacarpal shaft (1 case). There were excellent results in 84 cases, good in 4 cases and fair in 3 cases. CONCLUSION: The most common fractures after punching injury were metacarpal base fractures, especially the forth and fifth metacarpal bone. Distal metacarpal and metacarpal shaft fractures were mostly single fractures. There were diverse patterns of fracture-dislocation of the hand and wrist after punching. We must be careful to evaluate combined injury when a patient visits after punching injury.
Adult
;
Carpometacarpal Joints
;
Child
;
Congenital Abnormalities
;
Dislocations
;
Follow-Up Studies
;
Hand*
;
Humans
;
Retrospective Studies
;
Wrist*