1.Prediction of secondary structure and B-cell epitope of human IL-37
Qiaoyan GAO ; Yan LI ; Mi ZHOU ; Xueming GAO ; Xianli YUAN ; Mingcai LI
Chinese Journal of Immunology 2014;(5):648-650,653
Objective:To predict the secondary structure and B-cell epitope of human IL-37.Methods:Based on IL-37b ami-no acid sequence, the secondary structure was predicted by SOPMA; hydrophilicity, flexibility, accessibility index were predicted by software of ProScale, Bcepred, respectively.Combined the results according to these methods , the B cell epitopes of IL-37b were pre-dicted.Results: The second structure of IL-37b contained extended strand (31.65%), random coil (52.75%), alpha helix (8.26%), beta turn (7.34%) and the most possible epitopes of IL-37b were located in or adjacent to amino acid 21-27, 34-75, 175-192 , 213-215 .Conclusion:These results will be helpful for the estimate of the epitopes and provide a theory basis for developing mon -oclonal antibodies against human IL-37.
2.Applying graphics processing unit in real-time signal processing and visualization of ophthalmic Fourier-domain OCT system.
Qiaoyan LIU ; Yuejie LI ; Qiujing XU ; Jincheng ZHAO ; Liwei WANG ; Yonghe GAO
Chinese Journal of Medical Instrumentation 2013;37(1):1-5
This investigation introduces GPU (Graphics Processing Unit)- based CUDA (Compute Unified Device Architecture) technology into signal processing of ophthalmic FD-OCT (Fourier-Domain Optical Coherence Tomography) imaging system, can realize parallel data processing, using CUDA to optimize relevant operations and algorithms, in order to solve the technical bottlenecks that currently affect ophthalmic real-time imaging in OCT system. Laboratory results showed that with GPU as a general parallel computing processor, the speed of imaging data processing using GPU+CPU mode is more than dozens times faster than traditional CPU platform based serial computing and imaging mode when executing the same data processing, which reaches the clinical requirements for two dimensional real-time imaging.
Computer Graphics
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Image Interpretation, Computer-Assisted
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Tomography, Optical Coherence
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instrumentation
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methods
3.Clinical study on Wanfu-Qutong Decoction combined with esomeprazole tablets for atrophic gastritis
Shanshan XU ; Hongjie CHENG ; Yan GAO ; Naiwei ZHANG ; Qiaoyan ZHANG
International Journal of Traditional Chinese Medicine 2021;43(10):976-980
Objective:To evaluate the clinical efficacy of Wanfu-Qutong Decoction combined with esomeprazole in the treatment of chronic atrophic gastritis (CAG). Methods:A total of 106 CAG patients who met the inclusion criteria from June 2017 to June 2019 were randomly divided into two groups with 53 in each group. The control group took esomeprazole magnesium enteric coated tablets, and the observation group took Wanfu-Qutong Decoction on the basis of the control group. Both groups were treated continuously for 3 months. TCM syndrome score was performed before and after treatment, and the new Sydney system intuitive simulation score method was used to score the histopathology of gastric mucosa. The levels of gastrin 17 (G-17), pepsinogen (PGⅠ , PGⅡ) and the PG Ⅰ/Ⅱ were measured by ELISA. Results:The total effective rate was 96.2% (51/53) in the observation group and 79.2% (42/53) in the control group. There was significant difference between the two groups ( χ2=7.414, P<0.01). After treatment, the scores of epigastric pain, fullness, liking temperature and pressing, vomiting clear water, eating less and staying foolish, and limb burnout in the observation group were significantly lower than those in the control group ( t values were 2.788, 3.632, 3.816, 1.590, 2.183, 2.103, respectively, all Ps<0.05), and the scores of chronic inflammatory reaction, inflammatory activity, atrophy degree, dysplasia and intestinal metaplasia in the mucosa were significantly lower than those in the control group ( t values were 2.983, 2.106, 2.106, 3.773, 1.922, 3.095, respectively, all Ps<0.05). After treatment, the serum G-17 [(14.47 ± 3.06) pmol/L vs. (10.67 ± 2.47) pmol/L, t=10.510] and PG Ⅰ [(130.31 ± 14.79) μg/L vs. (102.36 ± 12.63) μg/L, t=8.178] and PG Ⅰ/Ⅱ [(10.45 ± 0.48) vs. (9.17 ± 0.72), t=2.104] in the observation group were significantly higher than those in the control group ( P<0.01 or P<0.05). Conclusion:Wanfu-Qutong Decoction combined with esomeprazole tablets can effectively improve the clinical symptoms of CAG patients, regulate the levels of G-17, PG Ⅰ , PG Ⅱ and PGⅠ/Ⅱ, and promote the repair of gastric mucosa.
4.A practical method of expression, purification and identification of beta-site app-cleaving enzyme
Rui ZHU ; Qiaoyan WU ; Xingmei ZHANG ; Xiaofang GAO ; Peiru WEI ; Xinyu ZHANG ; Fang WANG
Chinese Journal of Neuromedicine 2015;14(6):604-608
Objective To introduce a practical method that can be used to efficiently express,purify and identify Alzheimer's disease (AD) related beta-site app-cleaving enzyme 1 (BACE1) in common eukaryotic cells.Methods BACE1 cDNA was fished out from human brain cDNA library and ligated into the pEGFP-c3 expression vector,and then,the recombinant plasmid was transfected into the HEK293 cells.The BACE1 protein was purified with TALON Mental Affinity Resins column.The target protein was identified by Western blotting and fluorescence resonance energy transfer (FRET).BACE1 Activity Assay Kit was employed to test the activity of purified BACE1 in vitro.The recombinant BACE1/pEGFP-c3 plasmid and amyloid precusor protein (APP)/pDsRed-Monomer-N1 plasmid were co-transfected to the HEK293 cells and the cleavage activity of BACE1 in the cells was identified by Western blotting.Results The sequencing data of the obtained BACE1 gene were identical with those in GenBank.Activity test showed that the fluorescent values of blank controls,expressed BACE1 and standard BACE1 were 55.013±3.597,1836.629±154.195 (n=3) and 2639.548±207.1901 (n=3),respectively;as compared with the control group,significant differences were noted in both of the two groups (F=78.681,P=0.000);however,there is no significant difference between expressed BACE1 and standard BACE1 groups (P>0.05).Westem blotting showed the co-transfected BACE1 could cleave APP in HEK293 cells and the CTF-APP band was detectable.Conclusion A practical protocol is established for high expression,purification and identification of BACE1 in HEK293 cells,which is helpful to obtain BACE1,an important molecular target in AD research and treatment.
5.Anti-inflammatory effect of couplet medicinals of Achyranthes bidentata -Eucommia ulmoides on mouse macro phage RAW264.7
Mingzhu GAO ; Chun CHEN ; Qiaoyan ZHANG ; Jun BIAN ; Leilei BAO
China Pharmacy 2022;33(3):308-312
OB JECTIVE To study the anti-inflammatory effect of couplet medicinals of Achyranthes bidentata -Eucommia ulmoides. METHODS Mouse macrophage RAW 264.7 were divided into blank group ,model group ,A. bidentata group(800 μg/mL),E. ulmoides group(800 μg/mL)and low- ,medium- and high- concentration groups of couplet medicinals of A. bidentata - E. ulmoides (400,800,1 600 μg/mL). Excep for blank group and model group ,the other groups were added with corresponding drugs for 6 hours;then blank group was continued to add into the medium ,while model group was added into 10 μg/mL lipopolysaccharide (to induce the inflammatory model );other groups were added into corresponding drugs and 10 μ g/mL lipopolysaccharide. The levels of inflammatory factors [nitric oxide (NO),interleukin-1β(IL-1β),IL-6,tumor necrosis factor-α (TNF-α)] were detected ,and Jin ’s formula was used to evaluate the effects of A. bidentata -E. ulmoides . The expression of inducible nitric oxide synthase (iNOS),cyclooxygenase-2(COX-2),nuclear factor kappa-B (NF-κB)and inhibitor α of NF-κB (IκBα)as well as the phosphorylation of NF-κB p65,IκB kinase(IKK),p38 mitogen-activated protein kinase (p38 MAPK), extracellular signal-regulated kinase (ERK)and c-Jun N-terminal kinase (JNK)were determined. RESULTS Compared with blank group,the level of inflammatory factors ,protein expression of iNOS and COX- 2 as well as the phosphorylation of NF-κB p65, IKK,p38 MAPK,ERK and JNK were increased significantly (P<0.01),while the protein expression of IκBα was decreased significantly(P<0.01). After intervention of couplet medicinals of A. bidentata -E. ulmoides ,the level of inflammatory factors ,the expression or phosphorylation of above proteins were reversed significantly (P<0.05 or P<0.01),and couplet medicinals of A. bidentata-E. ulmoides had a synergistic effect. CONCLUSIONS The couplet medicinals of A. bidentata -E. ulmoides have synergistic anti-inflammatory effect on RAW 264.7 cells. Its mechanism may be related to the inhibition of NF-κB/MAPK signaling pathway related protein expression.