2.Bioinformatics analysis and expressed level of histone methyltransferase genes in Lonicera japonica.
Lin-jie QI ; Yuan YUAN ; Lu-qi HUANG ; Ping LONG ; Liang-ping ZHA ; Yao-long WANG
China Journal of Chinese Materia Medica 2015;40(11):2062-2067
Twenty-three histone methyltransferase genes were obtained from transcriptome dataset of Lonicera japonica. The nucleotide and proteins characteristics, subcellular localization, senior structural domains and conservative forecasting were analyzed. The result of phylogenetic tree showed that 23 histone methyltransferases were mainly divided into two groups: lysine methyltransferase and arginine methyltransferases. The result of gene expression showed that 23 histone methyltransferases showed preference in terms of interspecies and organs. They were more expressed in buds of L. japonica than in L. japonica var. chinensis and lower in leaves of L. japonica than in L. japonica var. chinensis. Eight genes were specific expressed in flower. These results provided basis for further understanding the function of histone methyltransferase and epigenetic regulation of active ingredients of L. japonica.
Computational Biology
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Gene Expression
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Histone-Lysine N-Methyltransferase
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genetics
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Lonicera
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enzymology
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genetics
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Phylogeny
3.Study on characteristics of non-glandular hairs of cultivated Lonicera japonica.
Shan-shan ZHANG ; Yuan YUAN ; Lu-qi HUANG ; Ping CHEN
China Journal of Chinese Materia Medica 2015;40(3):390-394
We collected 22 cultivated population of Lonicera japonica from 17 areas. The characteristics of non-glandular hairs were observed and measured by the scanning electron microscopy. The principal components analysis and correlation analysis were conduct based on length and density of L. japonica. The results showed a significant negative correlation between length and density of non-glandular hairs, and the characteristics of non-glandular was not corrrelated significantly with latitude. The correlation results indicated that the density was a key to separate "Damaohua" and "Jizhuahua". The contribution of climate and soil was important to the cultivated population. This reminded that the characteristics of non-glandular hairs were affected by environmental and genetic interaction.
Lonicera
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anatomy & histology
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growth & development
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ultrastructure
4.Analysis and design of signaling transfer mechanism based on third-party certification: quality prestige index of traditional Chinese medicine enterprises.
Guang YANG ; Nuo WANG ; Lan-Ping GUO ; Lu-Qi HUANG
China Journal of Chinese Materia Medica 2014;39(5):925-928
Traditional Chinese medicine market is a typical market with information asymmetry, which may lead to "lemons" problem. Third-Party Certification is efficient path to solve the problem of information asymmetry. For this reason geo-authentic and commodity classes certification seems to be very important. But as we know, information asymmetry happen in the stages of traditional Chinese patent medicines market. So a signaling transfer mechanism, which can deliver the quality signal, is badly needed in TCM market. This paper analysis and design of signaling transfer mechanism based on Third-Party Certification, which called quality prestige index of TCM enterprises (QPITCM). QPITCM can display quality information as a signal run through the TCM market.
Certification
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Drugs, Chinese Herbal
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economics
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standards
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Medicine, Chinese Traditional
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economics
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standards
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Quality Control
5.Numerical taxonomy of agronomic trait in cultivated Lonicera japonica.
Shan-Shan ZHANG ; Lu-Qi HUANG ; Yuan YUAN ; Ping CHEN
China Journal of Chinese Materia Medica 2014;39(8):1379-1385
Sixty-three morphological traits from 743 specimens of the 41 taxa within the cultivated Lonicera japonica were observed and measured, such as the height of plants, the length of leaf, the width of leaf, the length of anther, the alabastrum's number of one branch, the color of alabastrum and so on. A numerical taxonomy is presented by using the cluster analysis, principal components analysis (PCA) and factor analysis. Sixteen of 63 characters were screened by means of PCA and used for cluster analysis of 41 taxa with the method of Ward linkage and average euclidean distance. The cluster analysis showed that the 41 taxa could be divided into 5 groups when the Euclidean distance coefficient was 11.84. The factor analysis indicated that the shape of leaf, color of alabastrum, the pilosity and color of twiggery were of significance for the cultivated L. japonica classification. The results of this study will be a base for the core collection and breeding of L. japonica.
Breeding
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China
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Flowers
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chemistry
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classification
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genetics
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Lonicera
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chemistry
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classification
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genetics
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growth & development
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Plant Leaves
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chemistry
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classification
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genetics
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Quantitative Trait Loci
6.Study on chemical constituents in stems of Nelumbo nucifera by UPLC-ESI/Q-TOF-MS/MS.
Feng SHAN ; Yuan YUAN ; Li-ping KANG ; Lu-qi HUANG
China Journal of Chinese Materia Medica 2015;40(16):3233-3238
This paper employed UPLC-Electrospray Ionization /Quadrupole-Time of Flight-Mass /Mass Spectrometry( UPLC-ESI/Q-TOF-MS/MS) to analyze the chemical constituents in the stems of Nelumbo nucifera. The stems of N. nucifera were extracted with 75% methanol, and we applied an Agilent Zorbax SB-Aq column (2.1 mm x 100 mm, 1.8 μm) to UPLC analysis with water methanol-water( containing 0.05% formic acid) in gradient as mobile phase. The eluates were then detected by ESI-Q-TOF-MS/MS. Results indicated that 22 benzylisoquinoline alkaloids were indendified. Among them, one alkaloid may be a new compound and a component was found in the Lotus for the first time. We fully identify the composition of the Lotus stems for the first time, Which could provides theoretical foundation for further study and utilization of the medicinal resources.
Chromatography, High Pressure Liquid
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methods
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Drugs, Chinese Herbal
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chemistry
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Molecular Structure
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Nelumbo
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chemistry
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Plant Stems
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chemistry
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Tandem Mass Spectrometry
;
methods
7.Effect Analysis of the Optimization of Initial Drug Placement in the Automated Drug Dispensing Machine by Minimum Time Algorithm
Ping LU ; Liang CUI ; Xinwen QI ; Qian LI
China Pharmacy 2015;(22):3112-3114
OBJECTIVE:To optimize the drug placement in the automated drug dispensing machine to improve work efficien-cy. METHODS:Based on the principle of the minimum time algorithm,the drug which would be used at a high frequency was placed in the drug storage tank nearest to the drug outlet. Meanwhile,the rule of drug use was drawn from the information on a large number of prescriptions,based on which the drugs correlated with each other were placed in the drug storage tanks that were adjacent. With daily time it takes to add drugs,average time it takes to make up a prescription and the maximum number of drugs stored as the evaluated indexes,the initial drug placement in the automated drug dispensing machine was optimized. The changes in the indexes within 3 months before and after the above-mentioned optimization were statically analyzed. RESULTS:After calculat-ing the three-dimensional sizes of the packages of drugs and the dispensing frequency data of the previous year,354 drugs were se-lected and placed in the nearer or farther storage tanks in the automated dispensing machine according to the dispensing frequency and the correlation among them. After the optimization of the placement,daily time it takes to add drugs reduced by 54 min(218 vs. 165 min)on average,average time it takes to make up a prescription reduced by 8 s(24 vs.16 s)and the maximum number of drugs stored increased by 1 333 boxes(13 113 vs. 14 446 boxes)on average. There was statistical significance in differences(P<0.05). CONCLUSIONS:The initial drug placement in the automated drug dispensing machine that was optimized by minimum time algorithm has reduced daily time it takes to add drugs and average time it takes to make up a prescription and increased the maximum number of drugs stored and thus improved work efficiency.
8.STUDY OF THE AGE AND COMPARATIVE ANATOMY ABOUT THE ACTON OF LEVATOR AND TENSOR VELI PALATI MUSCLESON THE EUSTACHIAN TUBE
Jiang PING ; Tong XINKANG ; Ouyang QI ; Lu LIWEI ; Chen KESHENG
Acta Anatomica Sinica 1953;0(01):-
The attachments of eustachian tube, levator and tensor veli palati muscles on the base of the skull were measured from the skulls of human adults, infants, newborns ad well as monkeys, dogs and rabbits, respectively. Anatomical characteristics of the levator and tensor veli palati muscles that related to eustachian tubal ventilation and skull morphology were analysed. In addition, some head specimens were dissected for contrast. Levator veli palati muscle (LVPM) lies in the posterioinferior of the eustachian tube. The angles between LVPM and median saggital plane and the angles between LVPM and horizontal plane of palate are larger and their ability of raising the eustachian tube is more effective in the adult than in the newborn and animal. From the eustachian tube to the hamulus, tensor veli palati muscle (TVPM) descends almost vertically in the adult, but ventroward in the newborn and animals, which suggested their different actions upon eustachian tube. The skull morphology of the human adult differs from child and animal, which changes the position and function of LVPM and TVPM. In conclusion, eustachian tube was opened by LVPM chiefly in the adult while by TVPM in the newborn and animal. The incidence of otitis media with effusion is higher in the infant as it is the trasitional stage that the action of TVPM had been decreased while that of LVPM would not have been established.
9.Cloning and prokaryotic expression analysis of squalene synthase 2 (SQS2) from Salvia miltiorrhiza f. alba.
Qi-xian RONG ; Dan JIANG ; Liang-ping ZHA ; Ye SHEN ; Yan ZHANG ; Lu-qi HUANG
China Journal of Chinese Materia Medica 2015;40(7):1259-1265
According to the designed specific primers of gene fragment based on the Salvia miltiorrhiza transcriptome data, a full-length cDNA sequence of SQS2 from S. miltiorrhiza f. alba was cloned by the method of reverse transcription polymerase chain reaction (RT-PCR). The SmSQS2 cDNA sequence was obtained, this sequence is named SmSQS2 and its GenBank registration number is KM244731. The full length of SmSQS2 cDNA was 1245 bp, encoding 414 amino acids including 5'UTR 115 bp and 3'UTR 237 bp. Sequence alignment and phylogenetic analysis demonstrated that SmSQS2 had relative close relationship to the SQS2 of S. miltiorrhiza. The induction of E. coli [pET28-SQS2] in different temperature, induction time, IPTG concentrations and density of inducing host bacterium (A600) were performed, Shaking the culture at 30 degrees C until the A600 is approximately 0.6 and add IPTG to final concentration of 0.2 mmol x L(-1), and then the optimal expression of SmSQS2 recombinant protein were accumulated after the induction time of 20 h. The research provided important base for the study of sterol and terpene biosynthesis of SQS2 in S. miltiorrhiza f. alba.
Cloning, Molecular
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Farnesyl-Diphosphate Farnesyltransferase
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chemistry
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genetics
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metabolism
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Models, Molecular
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Molecular Sequence Data
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Phylogeny
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Plant Proteins
;
chemistry
;
genetics
;
metabolism
;
Salvia miltiorrhiza
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chemistry
;
classification
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enzymology
;
genetics
;
Sequence Alignment
10.Development of microsatellites and genetic diversity analysis of Scutellaria baicalensis Georgi using genomic-SSR markers.
Lin-jie QI ; Ping LONG ; Chao JIANG ; Yuan YUAN ; Lu-qi HUANG
Acta Pharmaceutica Sinica 2015;50(4):500-505
A total of 12 775 SSRs were identified from Scutellaria baicalensis Georgi genomic database, accounting for 2.56% of the total genomic sequences. The result showed that S. baicalensis SSRs were based on 68.32% dinucleotide and 18.63% trinucleotide repeats; CT/GA and TTC/GAA were predominant in the dinucleotide motifs and the trinucleotide motifs respectively. Nine primers were selected to produce highly reproducible SSR bands and were used in studying the genetic diversity of S. baicalensis, 50 individuals from ten populations. 68 SSR polymorphic loci were detected, these loci were polymorphic and displayed 4 to 12 alleles per locus with a mean number of 7; the effect number of alleles was 3. Expected heterozygosities were 0.6 and were far more greater than the average in dicotyledonous plants. PIC (polymorphism information content) was 0.72, Shannon's information index was 1.32, these all proved that S. baicalensis had a high genetic diversity in general. Genetic differentiation among population Gst was 0.131, genetic variation among population accounted for 13.1% and genetic variation within population accounted for 86.9%. The cluster analysis showed that 10 populations S. Baicalensis were classified into 2 groups, but it was not associated with geographical distribution.
Alleles
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Cluster Analysis
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Genetic Variation
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Genomics
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Microsatellite Repeats
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Scutellaria baicalensis
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genetics
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Trinucleotide Repeats