1.Genetic analysis of genitourinary malformations.
Jing-shu ZHANG ; Yu FU ; Yan-hui ZHAO ; Fei LI ; Ai-li QIAN ; Bin WU ; Jesse LI-LING
Chinese Journal of Medical Genetics 2009;26(2):134-138
OBJECTIVETo analyze the expression of genes from chromosomal region 22q11.2 and assess the association between mutation(s) of particular gene(s) from this region and malformations of the urinary system.
METHODSExpression of rat homologs of 33 genes from above region was determined in kidney tissues derived from rats of different fetal development ages (E13, E15, E19) and adulthood with reverse transcriptase-PCR. Potential mutation(s) in candidate gene SNAP29, whose expression pattern appeared to be unique, was screened in 44 patients and 220 normal controls with PCR-single strand conformation polymorphism (SSCP). Suspected positive regions were sequenced to verify the mutations.
RESULTSNine genes showed no expression throughout the whole development process; 18 genes with various expression levels showed continuous expression from the beginning of development; 6 genes only expressed for a short time, among which SNAP29 was selected for mutation screening. Upon sequencing, three mutations were identified from the 44 patients, including a G to A transition (GAG to AAG) in exon 2, and two A to G transitions (AGC to GGC) in exon 3.
CONCLUSIONThrough systematic analysis of the expression of genes from chromosomal region 22q11.2, the SNAP29 gene was found to have a potential role in the development of genitourinary system. Two missense mutations were identified in three patients. These included one in exon 2 (featuring cryptorchidism), and the other in exon 3 (featuring cryptorchidism and hypospadia). Neither of the mutations was found in the normal controls. The results suggested that mutation(s) of gene(s) from chromosomal region 22q11.2 may play an important role in the genesis of genitourinary malformations.
Animals ; DNA Mutational Analysis ; methods ; Exons ; genetics ; Female ; Humans ; Male ; Membrane Glycoproteins ; Membrane Proteins ; genetics ; Mice ; Platelet Glycoprotein GPIb-IX Complex ; Polymerase Chain Reaction ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single-Stranded Conformational ; Qb-SNARE Proteins ; genetics ; Qc-SNARE Proteins ; genetics ; Urogenital Abnormalities ; genetics
2.The Relationship between the SNAP-25 Polymorphism and Omission Errors in Korean Children with Attention Deficit Hyperactivity Disorder.
Eunjoo KIM ; Dong Ho SONG ; Nam Wook KIM ; In Jung SOHN ; Keun Ah CHEON
Clinical Psychopharmacology and Neuroscience 2017;15(3):222-228
OBJECTIVE: This study aimed to investigate the association between the synaptosomal-associated protein 25 kDa (SNAP-25) genotype and performance on the continuous performance test (CPT) in Korean children with attention-deficit/hyperactivity disorder (ADHD). METHODS: Eighty-seven children with ADHD (mean age, 9.23±1.99 years) participated in this study. Omission errors, commission errors, reaction time, and reaction time variability on the CPT were analyzed. The single-nucleotide polymorphism (SNP) rs3746544 (1065 T>G) of SNAP-25 was genotyped to examine the association with CPT performance. RESULTS: We found significantly more omission errors on the CPT among children with the TT genotype of SNAP-25 (t=2.56, p=0.012) after correcting for multiple testing. CONCLUSION: Our results suggest the possible involvement of the SNAP-25 1065 T>G polymorphism in the inattention phenotype in children with ADHD. Further studies with more refined neuropsychological measures and much larger sample sizes are needed to confirm our findings.
Attention Deficit Disorder with Hyperactivity*
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Child*
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Genotype
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Humans
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Phenotype
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Reaction Time
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Sample Size
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Synaptosomal-Associated Protein 25
3.Association between SNAP-25 gene polymorphism and attention deficit hyperactivity disorder.
Hong-yu ZHANG ; Yan-bo ZHU ; Hong CHANG ; Jia-chang CHEN
Chinese Journal of Pediatrics 2008;46(8):564-569
OBJECTIVETo analyse the association between polymorphism in human synaptosomal-associated protein of 25 000 (SNAP-25) gene and attention deficit hyperactivity disorder (ADHD) in Han Chinese children.
METHODSThe study samples were comprised of 100 integrated ADHD trios (included proband and biological parents) and 97 unrelated controls. Association of polymorphism with ADHD and its subtype was examined by: (1) comparing cases and controls; (2) using family-based association study in transmission disequilibrium test (TDT).
RESULTSCase-control analysis of short tandem repeat (STR) showed that there was no significant difference between the two groups in allele gene frequency and genotype frequency (P > 0.05); TDT analysis of the rs363006 SNP and the rs362549 SNP revealed no association between SNAP-25 polymorphisms and ADHD (P > 0.05). But after a stratification by ADHD subtype, the rs362549 SNP A allele showed a tendency to preferentially transmitted to ADHD-I subtype (chi(2) = 8.00, P < 0.01); and the rs362549 SNP G allele had a tendency to preferentially transmitted to ADHD-C subtype (chi(2) = 4.122, P < 0.05).
CONCLUSIONSNo association was found between SNAP-25 polymorphisms and ADHD. There was a possible association between rs362549 SNP polymorphism and ADHD subtypes, but the findings require replication before drawing a definitive conclusion.
Adolescent ; Alleles ; Attention Deficit Disorder with Hyperactivity ; genetics ; Case-Control Studies ; Child ; Female ; Gene Frequency ; Genotype ; Humans ; Male ; Microsatellite Repeats ; Polymorphism, Single Nucleotide ; Synaptosomal-Associated Protein 25 ; genetics
5.Lead impairs ability of learning and memory and affects expression of synaptosomal-associated protein-25 in hippocampus of offspring.
Ning LI ; Jin-xia JIA ; Yan-tao ZHENG ; Xin-xin LIU ; Ming-jun ZHU ; Bao-qing SHI ; Wen-jie LI
Chinese Journal of Industrial Hygiene and Occupational Diseases 2010;28(9):652-655
OBJECTIVETo find the effects of lead taken by pregnant mice on learning and memory and the expression of synaptosomal-associated protein (SNAP)-25 mRNA and protein, in order to reveal the mechanism of neurotoxicity induced by lead.
METHODSLead exposure was conducted through freely drinking the corresponding lead acetate solutions with dosages of 0.3, 1.0, 3.0 g/L respectively. Each group was composed of 10 mice. 7, 14 and 21 days after their birth. The lead contents in blood and hippocampus of the offspring were determined. At the 21st day the expression of SNAP-25 mRNA and protein in hippocampus of all the offspring in various dosages groups were determined by RT-PCR and immunohistochemistry assay.
RESULTSThe lead contents in blood and hippocampus of various lead exposed groups were significantly higher than those of the control group (P < 0.05). The lead levels in blood and hippocampus changed accordingly to the days of growth. In Water Morris Maze experiment, the result of 0.3 g/L group was not significantly different from that of the control group (P > 0.05), however, the results of 1.0, 3.0 g/L groups (5.89 ± 0.54, 9.53 ± 1.03) were significantly different from those of the control group (1.73 ± 0.07) (P < 0.05, P < 0.01). The expression of SNAP-25 mRNA and protein was lower in lead exposed groups than that of the control group (P < 0.05).
CONCLUSIONMaternal lead exposure may induce the damage in the ability of learning and memory of the offspring. The neurotoxicity of lead may be induced by decreasing the expression of SNAP-25 mRNA and protein so as to affect the release of neurotransmitter from presynaptic terminal resulted in nerve damages.
Animals ; Female ; Hippocampus ; drug effects ; metabolism ; Lead ; toxicity ; Maternal Exposure ; Maze Learning ; drug effects ; Memory ; drug effects ; Mice ; Pregnancy ; RNA, Messenger ; genetics ; Synaptosomal-Associated Protein 25 ; metabolism
6.Relationship between neuronal restricted silencing factor and induced differentiation from rat mesenchymal stem cells to neurons.
Bin LIU ; Hong-tu LI ; Tao ZHANG ; Fan-biao MENG ; Xiao-yu LIU ; Xi-ning PANG
Acta Academiae Medicinae Sinicae 2009;31(6):702-706
OBJECTIVETo analyze the change of the neuronal restricted silencing factor (NRSF) gene as well as the NRSF regulation genes in beta-mercaptoethanol induction of the marrow mesenchymal stem cells (MSCs) to neurons, and to discuss the function of NRSF in neural induction of the MSCs and the mechanism of the differentiation from MSCs to neurons.
METHODWe used beta-mercaptoethanol, serum-free DMEM, and dimethyl sulfoxide to induce rat MSCs to differentiate to neurons, and then analyzed the changes of the expressions of NRSF gene and NRSF-regulated genes through real-time PCR.
RESULTSThe rat MSCs were successfully induced to differentiate into neuron-like cells. The induced neuron marker, neuron-specific enolase, was positive. Real-time PCR showed that the expression of NRSF gene remarkably declined. The expressions of neurotrophic tyrosine kinase receptor, type 3, synaptosomal-associated protein 25, L1 cell adhesion molecular,neuronal pentraxin receptor in the NRSF-regulated genes also increased at varied extents.
CONCLUSIONSThe differentiation from MSCs to neurons is relevant with the decline of NRSF expression and the increase of the expressions of NRSF-regulated genes. The NRSF may be the key gene during the differentiation from MSCs to neurons.
Animals ; Bone Marrow Cells ; cytology ; metabolism ; Cell Differentiation ; physiology ; Cells, Cultured ; Mesenchymal Stromal Cells ; cytology ; metabolism ; Neurons ; cytology ; metabolism ; Phosphopyruvate Hydratase ; genetics ; metabolism ; Rats ; Rats, Wistar ; Repressor Proteins ; metabolism ; physiology ; Synaptosomal-Associated Protein 25 ; genetics ; metabolism
7.Association of 14 polymorphisms in the five candidate genes and attention deficit hyperactivity disorder.
Xue-Ping GAO ; Lin-Yan SU ; Ai-Ling ZHAO ; Xue-Rong LUO ; Kun XIA
Chinese Journal of Contemporary Pediatrics 2009;11(8):617-622
OBJECTIVEAttention deficit hyperactivity disorder (ADHD) is one of the most common behavior disorders in childhood and adolescent. The etiology of ADHD is unknown. The aim of this study was to investigate the relationship between each of the 14 polymorphisms in the five candidate genes and ADHD, and between the combination of some polymorphisms in those genes and ADHD, in attempting to examine whether combinations of genotypes would confer a significant susceptibility to ADHD.
METHODSOne hundred and thirty-nine children with ADHD and one hundred and nineteen normal children were enrolled. Eight single nucleotide polymorphisms (SNP) of three candidate genes were examined with PCR and RFLP techniques. 48 bp VNTR in DRD4 gene was examined with PCR, nondenaturing polyacrylamide gel electrophoresis and silver staining. Five microsatellites (MS) of three candidate genes were examined with genotyping. The relationship between the combinations of 12 polymorphisms and ADHD was examined with logistic regression analysis.
RESULTS1.The frequency of 1065T/1065T genotype and the 1065T allele were significantly higher in ADHD children than that in normal controls (P<0.05). The frequency of -48G/-48G genotype of the A-48G polymorphism of DRD1 gene was significantly lower in ADHD children than that in normal controls (P<0.05). 2. A specific combination of three polymorphisms in the two genes showing an association with ADHD gave a prediction level of 77.5%.
CONCLUSIONSThe T1065G polymorphism in the SNAP-25 may be associated with ADHD. The 1065T/1065T genotype and the 1065T allele may be a risk factor for ADHD. The A-48G polymorphism of DRDI may be associated with ADHD. The -48G/-48G genotype may be a protective factor for ADHD. The specific combination of three sites of SNP in SNAP-25 gene and DRDI gene is found and shows an association with ADHD in 12 polymorphisms of the five candidate genes on glutamatergic/dopaminergic pathway.
Adolescent ; Attention Deficit Disorder with Hyperactivity ; genetics ; Child ; Female ; Humans ; Logistic Models ; Male ; Minisatellite Repeats ; Polymorphism, Single Nucleotide ; Receptors, Dopamine D3 ; genetics ; Receptors, Dopamine D4 ; genetics ; Receptors, Dopamine D5 ; genetics ; Receptors, N-Methyl-D-Aspartate ; genetics ; Synaptosomal-Associated Protein 25 ; genetics
8.Restoration of Cdk5, TrkB and Soluble N-ethylmaleimide-Sensitive Factor Attachment Protein Receptor Proteins after Chronic Methylphenidate Treatment in Spontaneous Hypertensive Rats, a Model for Attention-Deficit Hyperactivity Disorder
Yeni KIM ; Songhee JEON ; Ha Jin JEONG ; Seong Mi LEE ; Ike dela PEÑA ; Hee Jin KIM ; Doug Hyun HAN ; Bung Nyun KIM ; Jae Hoon CHEONG
Psychiatry Investigation 2019;16(7):558-564
OBJECTIVE: Synaptic vesicle mobilization and neurite outgrowth regulation molecules were examined in modulation of effects of methylphenidate (MPH) in Spontaneous Hypertensive Rats (SHRs), a model for attention-deficit hyperactivity disorder (ADHD). METHODS: We compared the changes in the protein expression level of Cyclin dependent kinase 5 (Cdk5) and molecular substrates of Cdk5; tropomyosin receptor kinase B (TrkB), syntaxin 1A (STX1A) and synaptosomal-associated protein 25 (SNAP25). Comparisons were made in prefrontal cortex of vehicle (distilled water i.p. for 7 days)-treated SHRs, vehicle-treated Wistar Kyoto Rats (WKYs) and MPH (2 mg/kg i.p. for 7 days) treated SHRs. RESULTS: The Cdk5 level of vehicle-treated SHRs was significantly decreased compared to the Cdk5 level of vehicle-treated WKY rats, but was restored to the expression level of vehicle-treated WKYs in MPH-treated SHR. The ratio of p25/p35 was significantly decreased in MPH-treated SHR compared to vehicle-treated SHR. Moreover, TrkB, STX1A and SNAP25 of vehicle-treated SHRs were significantly decreased compared to vehicle-treated WKY rats, but were restored to the expression level of vehicle-treated WKYs in MPH-treated SHR. CONCLUSION: The results show that Cdk5, TrkB, STX1A, and SNAP25 were involved in the modulation of MPH effects in prefrontal cortex of SHRs and play important role in treatment of ADHD.
Animals
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Cyclin-Dependent Kinase 5
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Methylphenidate
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Neurites
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Phosphotransferases
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Prefrontal Cortex
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Rats
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Rats, Inbred WKY
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Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins
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Synaptic Vesicles
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Synaptosomal-Associated Protein 25
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Syntaxin 1
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Tropomyosin
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Water
9.Prioritization of candidate genes for attention deficit hyperactivity disorder by computational analysis of multiple data sources.
Suhua CHANG ; Weina ZHANG ; Lei GAO ; Jing WANG
Protein & Cell 2012;3(7):526-534
Attention deficit hyperactivity disorder (ADHD) is a common, highly heritable psychiatric disorder characterized by hyperactivity, inattention and increased impulsivity. In recent years, a large number of genetic studies for ADHD have been published and related genetic data has been accumulated dramatically. To provide researchers a comprehensive ADHD genetic resource, we previously developed the first genetic database for ADHD (ADHDgene). The abundant genetic data provides novel candidates for further study. Meanwhile, it also brings new challenge for selecting promising candidate genes for replication and verification research. In this study, we surveyed the computational tools for candidate gene prioritization and selected five tools, which integrate multiple data sources for gene prioritization, to prioritize ADHD candidate genes in ADHDgene. The prioritization analysis resulted in 16 prioritized candidate genes, which are mainly involved in several major neurotransmitter systems or in nervous system development pathways. Among these genes, nervous system development related genes, especially SNAP25, STX1A and the gene-gene interactions related with each of them deserve further investigations. Our results may provide new insight for further verification study and facilitate the exploration of pathogenesis mechanism of ADHD.
Attention Deficit Disorder with Hyperactivity
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genetics
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Computer Simulation
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Databases, Genetic
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Gene Regulatory Networks
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Genetic Association Studies
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Genetic Predisposition to Disease
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Humans
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Models, Genetic
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Software
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Synaptosomal-Associated Protein 25
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genetics
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Syntaxin 1
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genetics
10.LRRK2 phosphorylates Snapin and inhibits interaction of Snapin with SNAP-25.
Hye Jin YUN ; Joohyun PARK ; Dong Hwan HO ; Heyjung KIM ; Cy Hyun KIM ; Hakjin OH ; Inhwa GA ; Hyemyung SEO ; Sunghoe CHANG ; Ilhong SON ; Wongi SEOL
Experimental & Molecular Medicine 2013;45(8):e36-
Leucine-rich repeat kinase 2 (LRRK2) is a gene that, upon mutation, causes autosomal-dominant familial Parkinson's disease (PD). Yeast two-hybrid screening revealed that Snapin, a SNAP-25 (synaptosomal-associated protein-25) interacting protein, interacts with LRRK2. An in vitro kinase assay exhibited that Snapin is phosphorylated by LRRK2. A glutathione-S-transferase (GST) pull-down assay showed that LRRK2 may interact with Snapin via its Ras-of-complex (ROC) and N-terminal domains, with no significant difference on interaction of Snapin with LRRK2 wild type (WT) or its pathogenic mutants. Further analysis by mutation study revealed that Threonine 117 of Snapin is one of the sites phosphorylated by LRRK2. Furthermore, a Snapin T117D phosphomimetic mutant decreased its interaction with SNAP-25 in the GST pull-down assay. SNAP-25 is a component of the SNARE (Soluble NSF Attachment protein REceptor) complex and is critical for the exocytosis of synaptic vesicles. Incubation of rat brain lysate with recombinant Snapin T117D, but not WT, protein caused decreased interaction of synaptotagmin with the SNARE complex based on a co-immunoprecipitation assay. We further found that LRRK2-dependent phosphorylation of Snapin in the hippocampal neurons resulted in a decrease in the number of readily releasable vesicles and the extent of exocytotic release. Combined, these data suggest that LRRK2 may regulate neurotransmitter release via control of Snapin function by inhibitory phosphorylation.
Amino Acid Sequence
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Animals
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Exocytosis
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Female
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HEK293 Cells
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Humans
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Mice
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Molecular Sequence Data
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Mutant Proteins/metabolism
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Phosphorylation
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Phosphothreonine/metabolism
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Protein Binding
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Protein Interaction Mapping
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Protein Structure, Tertiary
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Protein-Serine-Threonine Kinases/*metabolism
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Qa-SNARE Proteins/metabolism
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Rats
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Rats, Sprague-Dawley
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Synaptosomal-Associated Protein 25/*metabolism
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Synaptotagmins/metabolism
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Vesicle-Associated Membrane Protein 2/metabolism
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Vesicular Transport Proteins/chemistry/*metabolism