1.Transcriptome Sequencing Analysis of Chrysomyia Megacephala Pupae in Different Growing Periods.
Qi Yan WANG ; Hong Ling ZHANG ; Zheng REN ; Yu Bo LIU ; Jing Yan JI ; Jiang HUANG
Journal of Forensic Medicine 2021;37(3):318-324
Objective To study the growth regulation, environmental adaption and epigenetic regulation of Chrysomyia Megacephala pupae, in order to obtain the transcriptome data of Chrysomyia Megacephala in different growing periods, and lay the foundation for forensic application. Methods The Chrysomyia Megacephala was cultivated and after pupation, 3 pupae were collected every 24 h from pupation to emergence, and stored at -80 ℃ for later use. High-throughput sequencing was performed by Illumina Hiseq 4000 and Unigenes were obtained. The Unigenes were compared by comparison tool BLAST from NCBI in databases such as NR, STRING, SWISS-PROT (including Pfam), GO, COG, KEGG in order to obtain the corresponding annotation information. The expression amount of Unigenes obtained by sequencing in Chrysomyia Megacephala in six different growing periods was calculated by FPKM method, and the discrepant genes were screened according to the following standards: the log2 multiple absolute value of FPKM expression amount between two different growing periods must be larger than 1 (log2|FC|>1), and the false discovery rate must be less than 0.05. Results When the mean temperature was 25.6 ℃, Chrysomyia Megacephala emerged 6 d after they pupated. A total of 43 408 pieces of Unigenes were obtained and their mean length was 905 bp, of which 32 500, 18 720, 13 542, 9 191 and 18 720 pieces were annotated by NR, SWISS-PORT, Pfam, STRING and KEGG databases. According to the discrepant gene analysis of pupae in two different growing periods, the number of genes with variants ranged from 801 to 5 307, and the total number of discrepant genes was 45 676. Conclusion The gene expressions of the transcriptome data of Chrysomyia Megacephala pupae in different growing periods are different. The results provided a good foundation for further research on the transcriptome changes in each period of the pupae of sarcosaprophagous flies and provided the basis for exploring the genes associated with the growth of Chrysomyia Megacephala pupae.
Animals
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Epigenesis, Genetic
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Gene Expression Profiling
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High-Throughput Nucleotide Sequencing
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Molecular Sequence Annotation
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Pupa/genetics*
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Transcriptome
2.Isolation, identification and analysis of the expression profile of miRNAs in Aedes albopictus.
Pei-ming ZHENG ; Jin-ya WU ; Jin-bao GU ; Zhi-jian TU ; Xiao-guang CHEN
Journal of Southern Medical University 2010;30(4):677-680
OBJECTIVETo verify the miRNA in Aedes albopictus and characterize the expression profile of several miRNAs across all the life stages of Aedes albopictus.
METHODSBased on the published miRNA sequences of Anopheles gambiae and Aedes aegypti, 6 DIG-labeled antisense probes were synthesized. The total RNAs from Aedes albopictus in 6 developmental stages (embryo, early larvae, late larvae, pupa, male and female adults) were extracted with a mirVana miRNA isolation kit, loaded onto 15% denaturing polyacrylamide gel and hybridized with the appropriate DIG-labeled probes.
RESULTSNorthern blotting detected 5 miRNAs in Aedes albopictus, of which mir-9a was mainly expressed in embryo and larva stages, let-7 in pupa and adult stages, miR-184 in all life stages, mir-M1 only in the embryos and miR-1175 in all the life stages except for embryos. The expression profiles of these miRNAs in Aedes albopictus were similar to those in D. melanogaster and An.stepheni. miR-1174 was not detected in any of the developmental stages of Aedes albopictus.
CONCLUSIONThese results present the first direct experimental evidence of miRNA in Aedes albopictus. The expression profiles of the analyzed miRNAs in Aedes albopictus showed stage specificity and conservation with other mosquitoes. Further studies on the functions of these miRNAs may offer new insights in mosquito biology and may lead to novel approaches to the development of insecticides.
Aedes ; genetics ; Animals ; Female ; Gene Expression Profiling ; Genes, Insect ; Larva ; genetics ; Male ; MicroRNAs ; genetics ; isolation & purification ; Pupa ; genetics
3.Cloning, identification and preliminary functional analysis of odorant receptor 7 gene of Aedes albopictus.
Ning ZHOU ; Xiaoming WANG ; Yuhua DENG ; Hongmei LIU ; Tong LIU ; Xiaoguang CHEN
Journal of Southern Medical University 2014;34(10):1420-1425
OBJECTIVETo clone and identify olfactory receptor odorant receptor 7 (OR7) gene of Aedes albopictus and analyze its expression profile and calcium regulation function.
METHODRT-PCR was used to amplify the olfactory receptor OR7 gene of Ae. albopictus and OR7 expression was detected in different tissues and organs. The coding sequence of OR7 gene was cloned in eukaryotic expression vector pME18s, which was then transfected into HEK293 cells. The calcium callback function in response to odor molecule stimulation was analyzed by calcium imaging technique.
RESULTSThe OR7 gene of Ae. albopictus was cloned and sequence analysis showed that its coding region was 1395 bp. RT-PCR detected OR7 expression in the larvae, pupae and adult mosquitoes, especially in female mosquitos. Preliminary analysis of calcium callback function demonstrated the specific regulation of calcium absorption by OR7 in response to odor molecule stimulation.
CONCLUSIONThe OR7 gene of Ae. albopictus has been cloned successfully. OR7 is highly expressed in female mosquitos and is capable of specific recognition of the odor molecules.
Aedes ; genetics ; Animals ; Cloning, Molecular ; Female ; Gene Expression ; Genes, Insect ; HEK293 Cells ; Humans ; Larva ; Pupa ; Receptors, Odorant ; genetics
4.Expression of human interleukin-11 in cell culture and larvae of silkworm.
Xi-Jie GUO ; Yong-Feng JIN ; Ming-Guan YANG ; Yao-Zhou ZHANG
Chinese Journal of Biotechnology 2002;18(1):30-34
A recombinant transfer vector, pBacIL-11, containing hIL-11 cDNA of 546 nucleotides lacking leader sequence was constructed and co-transfected into BmN cells with linearized BmBacPAK(modified BmNPV) DNA for construction of a recombinant baculovirus carrying the hIL-11 gene. Southern hybridization analysis suggested that the recombinant baculovirus DNA contained hIL-11 cDNA fragment. RNA dot blotting demonstrated that the hIL-11 gene was transcribed. The recombinant baculovirus has a strong infectivity to BmN cell line and to silkworm larvae and pupae. Specific hIL-11 bands were detected from all the samples of cell extract, culture supernatant, haemolymph of larvae and pupae by SDS-PAGE analysis. Biological activity of the expressed product was determined with IL-11 dependent B9-11 cell line and by MTT colorimetric assay, which indicated that biologically active rhIL-11 protein was overexpressed in BmN cell line and in silkworm larvae and pupae.
Animals
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Baculoviridae
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genetics
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Bombyx
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cytology
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growth & development
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metabolism
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Cell Culture Techniques
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Gene Expression
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Genetic Vectors
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Humans
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Interleukin-11
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biosynthesis
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genetics
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Larva
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genetics
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metabolism
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Pupa
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genetics
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metabolism
5.Cloning and expression profile of Bmyan in the silkworm (Bombyx mori) and experimental validation as one target of microRNA 7.
Shiping LIU ; Yaxi HUANG ; Jiyun YIN ; Xiaoyan WU ; Lanting ZHOU ; Wei WANG ; Qingyou XIA
Chinese Journal of Biotechnology 2015;31(11):1612-1622
microRNAs (miRNAs) are an extensive class of -22-nucleotide (nt) endogenous noncoding RNAs regulating life activities ofmetazoans through binding to 3'-untranslated regions (3'-UTRs) of their target genes. This work aimed to identify yan gene in the silkworm, reveal its expression profile and confirm if it is one target of bmo-miR-7 and, as such, have potential for contributing to better understanding of the molecular mechanisms involved in the metamorphosis of silkworm. Based on homolog searching and PCR amplification, we cloned the coding sequence (CDS) of Bmyan, which encodes 476 amino acid residues and contains SAM-PNT and ETs domains. Quantitative PCR (q-PCR), RT-PCR and microarray data revealed high expression of Bmyan in the head, body wall and ovary of day-3 fifth instar larval silkworm, low or no expression in other tissues. It was lowly expressed in the early larval stages, but highly expressed from late spinning to day 4 pupa. The 3'-UTR of Bmyan was obtained by rapid-amplification of cDNA ends (3'RACE) and predicted to contain two potential recognition sites of bmo-miR-7. The luciferase reporter vector containing the 3'-UTR of Bmyan was constructed and co-transfected into BmE cell line with the mimic of bmo-miR-7 and the decreased relative activity of luciferase showed that Bmyan is one target of bmo-miR-7. This work helps further functional analysis of bmo-miR-7 and Bmyan in the silkworm.
3' Untranslated Regions
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Animals
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Bombyx
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genetics
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Cell Line
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Cloning, Molecular
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Female
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Genetic Vectors
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Insect Proteins
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genetics
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Larva
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Metamorphosis, Biological
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MicroRNAs
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genetics
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Pupa
6.Forensic applications of the sequencing of mitochondrial DNA cytochrome oxidase subunit I gene for sarcosaphagous flies (Diptera) in Huhhot and Dunhuang district.
Ji-feng CAI ; Jian-guo DONG ; Min LIU
Journal of Forensic Medicine 2005;21(2):100-106
OBJECTIVE:
To solve the problems of identification of Sarcosaphagous flies and their larvae, pupas and eggs.
METHODS:
Sarcosaphagous Flies (Diptera) Samples were collected on the corpses of rabbits in the Huhhot district and a pig in the Dunhuang district. A 278bp region in the cytochrome oxidase subunit I (CO I) gene in mtDNA was analysed by DNA sequencing, A neighbour-joining tree using the Tamura and Nei model of nucleotide substitution was also constructed using the MEGA2.1 package.
RESULTS:
A 278 base pairs region of the gene for CO I encoding region of mtDNA of above all samples was showed less than 1% sequence divergence within species and about 3% divergence between species.
CONCLUSION
It is an effective, easy and accurate method to be used for identification of these Sarcosaphagous Flies (Diptera) to species group by sequencing the 278 base pairs region of the CO I encoding gene of mtDNA.
Animals
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Base Sequence
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DNA, Mitochondrial/genetics*
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Diptera/genetics*
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Electron Transport Complex IV/genetics*
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Forensic Medicine/methods*
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Larva/genetics*
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Phylogeny
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Polymerase Chain Reaction/methods*
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Pupa/genetics*
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Rabbits
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Sequence Analysis, DNA
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Species Specificity
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Swine
7.Identification of six species of sarcosaphagous flies (Diptera) by sequence analysis of cytochrome oxidase subunit I gene (COI) in Weifang.
Xin-Jie WANG ; Xue-Hai WANG ; Li-Jiang DIAO ; Gui-Ping LU
Journal of Forensic Medicine 2006;22(2):93-94
OBJECTIVE:
To identify sarcosaphagous flies and their larvae, pupa.
METHODS:
Sarcosaphagous flies and their larvae, pupas were collected from human corpses and their surroundings in the Weifang city. A 304 bp region in COI gene was analyzed by mtDNA sequencing.
RESULTS:
The studied region showed no sequence divergence within same species and significant difference were found between different species in all samples.
CONCLUSION
It is a practical approach to identify these Sarcosaphagous flies and their larvae, pupas by sequence analysis of the 304bp region of the COI in mtDNA.
Animals
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Base Sequence
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China
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DNA Primers
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DNA, Mitochondrial/genetics*
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Diptera/genetics*
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Electron Transport Complex IV/genetics*
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Forensic Medicine
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Genes, Insect
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Humans
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Larva/genetics*
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Phylogeny
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Polymerase Chain Reaction/methods*
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Pupa/genetics*
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Sequence Analysis, DNA/methods*
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Species Specificity
8.Allergenic Characterization of 27-kDa Glycoprotein, a Novel Heat Stable Allergen, from the Pupa of Silkworm, Bombyx mori.
Kyoung Yong JEONG ; Mina SON ; June Yong LEE ; Kyung Hee PARK ; Jae Hyun LEE ; Jung Won PARK
Journal of Korean Medical Science 2016;31(1):18-24
Boiled silkworm pupa is a traditional food in Asia, and patients with silkworm pupa food allergy are common in these regions. Still now only one allergen from silkworm, arginine kinase, has been identified. The purpose of this study was to identify novel food allergens in silkworm pupa by analyzing a protein extract after heat treatment. Heat treated extracts were examined by proteomic analysis. A 27-kDa glycoprotein was identified, expressed in Escherichia coli, and purified. IgE reactivity of the recombinant protein was investigated by ELISA. High molecular weight proteins (above 100 kDa) elicited increased IgE binding after heat treatment compared to that before heat treatment. The molecular identities of these proteins, however, could not be determined. IgE reactivity toward a 27-kDa glycoprotein was also increased after heating the protein extract. The recombinant protein was recognized by IgE antibodies from allergic subjects (33.3%). Glycation or aggregation of protein by heating may create new IgE binding epitopes. Heat stable allergens are shown to be important in silkworm allergy. Sensitization to the 27-kDa glycoprotein from silkworm may contribute to elevation of IgE to silkworm.
Adolescent
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Adult
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Allergens/*chemistry/*immunology
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Amino Acid Sequence
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Animals
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Bombyx/*chemistry/genetics/growth & development/*immunology
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Epitopes/immunology
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Female
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Food Hypersensitivity/etiology
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Glycoproteins/*chemistry/genetics/*immunology
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Hot Temperature
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Humans
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Immunoglobulin E/immunology
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Male
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Molecular Sequence Data
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Molecular Weight
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Proteomics
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Pupa/chemistry/immunology
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Recombinant Proteins/biosynthesis/chemistry/immunology
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Sequence Alignment