1.A new variant of the ATP13A2 gene in Chinese patients with early-onset parkinsonism.
Lei WANG ; Ji-Feng GUO ; Li-Luo NIE ; Hai-Nan ZHANG ; Lu SHEN ; Hong JIANG ; Qian PAN ; Kun XIA ; Bei-Sha TANG ; Xin-Xiang YAN
Chinese Medical Journal 2009;122(24):3082-3085
2.Extremely low frequency electromagnetic radiation enhanced energy metabolism and induced oxidative stress in Caenorhabditis elegans.
Yong-Yan SUN ; Ya-Hong WANG ; Zhi-Hui LI ; Zhen-Hua SHI ; Yan-Yan LIAO ; Chao TANG ; Peng CAI
Acta Physiologica Sinica 2019;71(3):388-394
The aim of this study was to determine the effects of extremely low frequency electromagnetic field (ELF-EMF) on energy metabolism and oxidative stress in Caenorhabditis elegans (C. elegans). Worms in three adult stages (young adult stage, egg-laying stage and peak egg-laying stage) were investigated under 50 Hz, 3 mT ELF-EMF exposure. ATP levels, ATP synthase activity in vivo, reactive oxygen species (ROS) content, and changes of total antioxidant capacity (TAC) were detected, and worms' oxidative stress responses were also evaluated under ELF-EMF exposure. The results showed that ATP levels were significantly increased under this ELF-EMF exposure, and mitochondrial ATP synthase activity was upregulated simultaneously. In young adult stage, worms' ROS level was significantly elevated, together with upregulated TAC but with a decreased ROS-TAC score indicated by principal component analysis. ROS level and TAC of worms had no significant changes in egg-laying and peak egg-laying stages. Based on these results, we concluded that ELF-EMF can enhance worm energy metabolism and elicit oxidative stress, mainly manifesting as ATP and ROS level elevation together with ATP synthase upregulation and ROS-TAC score decrease in young adult C. elegans.
Adenosine Triphosphate
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metabolism
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Animals
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Caenorhabditis elegans
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radiation effects
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Electromagnetic Radiation
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Energy Metabolism
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Mitochondrial Proton-Translocating ATPases
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metabolism
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Oxidative Stress
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Reactive Oxygen Species
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analysis
3.Regulation of Vacuolar H+-ATPase c Gene Expression by Oxidative Stress.
Whan Jong KWAK ; Seong Mook KIM ; Min Sung KIM ; Jung Hoon KANG ; Dong Jin KIM ; Ho Shik KIM ; Oh Joo KOWN ; In Kyung KIM ; Seong Whan JEONG
The Korean Journal of Physiology and Pharmacology 2005;9(5):275-282
By using differential display, we identified one of the genes encoding the multi-subunit complex protein V-ATPase, c subunit gene (ATP6L), and showed alterations of the gene expression by oxidative stresses. Expression of the ATP6L gene in Neuro-2A cells was increased by the treatment with H2O2 and incubation in hypoxic chamber, implying that the expression of the ATP6L gene is regulated by oxidative stresses. To examine mechanisms involved in the regulation of the gene expression by oxidative stresses, the transcriptional activity of the rat ATP6L promoter was studied. Transcription initiation site was determined by primer extension analysis and DNA sequencing, and promoter of the rat ATP6L and its deletion clones were constructed in reporter assay vector. Significant changes of the promoter activities in Neuro-2A cells were observed in two regions within the proximal 1 kbp promoter, and one containing a suppressor was in -195 to -220, which contains GC box that is activated by binding of Sp1 protein. The suppression of promoter activity was lost in mutants of the GC box. We confirmed by electrophoretic mobility shift and supershift assays that Sp1 protein specifically binds to the GC box. The promoter activity was not changed by the H2O2 treatment and incubation in hypoxic chamber, however, H2O2 increased the stability of ATP6L mRNA. These data suggest that the expression of the ATP6L gene by oxidative stresses is regulated at posttranscriptional level, whereas the GC box is important in basal activities of the promoter.
Animals
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Clone Cells
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Gene Expression*
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Hydrogen Peroxide
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Oxidative Stress*
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Rats
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RNA, Messenger
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Sequence Analysis, DNA
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Transcription Initiation Site
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Vacuolar Proton-Translocating ATPases*
4.Extracellular ATP is generated by ATP synthase complex in adipocyte lipid rafts.
Bong Woo KIM ; Hyo Jung CHOO ; Joong Won LEE ; Ji Hyun KIM ; Young Gyu KO
Experimental & Molecular Medicine 2004;36(5):476-485
Mitochondrial biogenesis is known to accompany adipogenesis to complement ATP and acetyl-CoA required for lipogenesis. Here, we demonstrated that mitochondrial proteins such as ATP synthase alpha and beta, and cytochrome c were highly expressed during the 3T3-L1 differentiation into adipocytes. Fully-differentiated adipocytes showed a significant increase of mitochondria under electron microscopy. Analysis by immunofluorescence, cellular fractionation, and surface biotinylation demonstrated the elevated levels of ATP synthase complex found not only in the mitochondria but also on the cell surface (particularly lipid rafts) of adipocytes. High rate of ATP (more than 30 micrometer) synthesis from the added ADP and Pi in the adipocyte media suggests the involvement of the surface ATP synthase complex for the exracellular ATP synthesis. In addition, this ATP synthesis was significantly inhibited in the presence of oligomycin, an ATP synthase inhibitor, and carbonyl cyanide m-chlorophenylhydrazone (CCCP), an ATP synthase uncoupler. Decrease of extracellular ATP synthesis in acidic but not in basic media further indicates that the surface ATP synthase may also be regulated by proton gradient through the plasma membrane.
Adenosine Triphosphate/analysis/*biosynthesis
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Adipocytes/*enzymology/ultrastructure
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Animals
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Cell Differentiation/physiology
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Cell Membrane/chemistry
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Cells, Cultured
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Humans
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Membrane Microdomains/chemistry/*enzymology
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Mice
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Mitochondria/metabolism/ultrastructure
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Mitochondrial Proton-Translocating ATPases/analysis/*physiology
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Research Support, Non-U.S. Gov't
5.Mutation analysis of ATP13A2 gene in Chinese patients with familial autosomal recessive early-onset parkinsonism.
Dan HE ; Ji-feng GUO ; Lei WANG ; Zhi-quan XIAO ; Li-luo NIE ; Xue-wei ZHANG ; Bei-sha TANG
Chinese Journal of Medical Genetics 2009;26(5):567-570
OBJECTIVETo investigate the mutation characteristics of ATP13A2 gene in Chinese patients with familial autosomal recessive early-onset parkinsonism (AREP).
METHODSMutations of ATP13A2 gene were screened by polymerase chain reaction combined with DNA direct sequencing in patients with familial AREP.
RESULTSNo pathogenic mutations in ATP13A2 gene were detected in this group. Six reported polymorphisms were identified. They were IVS6+70A>G, IVS12+66A>G, m.1849C>T, IVS20-56 G>A, m2671C>T and m2824G>A.
CONCLUSIONATP13A2 gene mutations may be rare in Chinese patients with familial autosomal recessive early-onset parkinsonism.
Adult ; Age of Onset ; Asian Continental Ancestry Group ; genetics ; Base Sequence ; China ; epidemiology ; DNA Mutational Analysis ; Female ; Humans ; Male ; Middle Aged ; Molecular Sequence Data ; Mutation ; Parkinsonian Disorders ; epidemiology ; genetics ; Pedigree ; Polymorphism, Genetic ; Proton-Translocating ATPases ; genetics
6.Cell type specificity of signaling: view from membrane receptors distribution and their downstream transduction networks.
Ying HE ; Zhonghao YU ; Dongya GE ; Rui WANG-SATTLER ; Hans-Jürgen THIESEN ; Lu XIE ; Yixue LI
Protein & Cell 2012;3(9):701-713
Studies on cell signaling pay more attention to spatial dynamics and how such diverse organization can relate to high order of cellular capabilities. To overview the specificity of cell signaling, we integrated human receptome data with proteome spatial expression profiles to systematically investigate the specificity of receptors and receptor-triggered transduction networks across 62 normal cell types and 14 cancer types. Six percent receptors showed cell-type-specific expression, and 4% signaling networks presented enriched cell-specific proteins induced by the receptors. We introduced a concept of "response context" to annotate the cell-type dependent signaling networks. We found that most cells respond similarly to the same stimulus, as the "response contexts" presented high functional similarity. Despite this, the subtle spatial diversity can be observed from the difference in network architectures. The architecture of the signaling networks in nerve cells displayed less completeness than that in glandular cells, which indicated cellular-context dependent signaling patterns are elaborately spatially organized. Likewise, in cancer cells most signaling networks were generally dysfunctional and less complete than that in normal cells. However, glioma emerged hyper-activated transduction mechanism in malignant state. Receptor ATP6AP2 and TNFRSF21 induced rennin-angiotensin and apoptosis signaling were found likely to explain the glioma-specific mechanism. This work represents an effort to decipher context-specific signaling network from spatial dimension. Our results indicated that although a majority of cells engage general signaling response with subtle differences, the spatial dynamics of cell signaling can not only deepen our insights into different signaling mechanisms, but also help understand cell signaling in disease.
Cell Line
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Databases, Protein
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Gene Expression Profiling
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Humans
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Metabolic Networks and Pathways
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Neoplasms
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metabolism
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pathology
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Proteome
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analysis
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Receptors, Cell Surface
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metabolism
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Receptors, Tumor Necrosis Factor
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metabolism
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Signal Transduction
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Vacuolar Proton-Translocating ATPases
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metabolism
7.Biopsy-Proven Type 1 Renal Tubular Acidosis in a Patient with Metabolic Acidosis.
Seok Hui KANG ; Jin KIM ; Jong Won PARK
The Korean Journal of Internal Medicine 2012;27(1):119-119
No abstract available.
Acidosis/*complications/drug therapy
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Acidosis, Renal Tubular/drug therapy/etiology/metabolism/*pathology
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Adult
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Aquaporin 2/analysis
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Biological Markers/analysis
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Biopsy
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Female
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Humans
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Immunohistochemistry
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Kidney Tubules/chemistry/drug effects/*pathology
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Nephrocalcinosis/etiology/pathology
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Proton-Translocating ATPases/analysis
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Sodium Bicarbonate/therapeutic use
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Tomography, X-Ray Computed
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Treatment Outcome
8.Establishment of Mongolian gerbil model of gastric cancer induced by Helicobacter pylori infection and its proteomics analysis.
Yan ZHAO ; Yuan XIE ; Xian CHEN ; Wenjie XU ; Yan WANG ; Jianjiang ZHOU
Chinese Journal of Pathology 2014;43(12):820-826
OBJECTIVETo establish an animal model of gastric cancer by long-term infection of Helicobacter pylori (H.pylori) and to elucidate the pathogenesis by proteomics analysis.
METHODSFifty male Mongolian gerbils (4-5 week-old and weighted 60-100 g) were infected with H.pylori and the gastric tissues were obtained after the infection at 3, 6, 12 and 24 months. Histological changes were evaluated by H-E staining of the gastric tissue sections. Detection of H.pylori was performed by in-vitro culture of fresh gastric tissue samples, PCR amplification of H.pylori 16s rRNA and localization by silver staining. In addition, proteins extracted from gastric tissue samples were subjected to two-dimensional electrophoresis (2-DE) at various infection time points. Protein spots with increased quantity over the course of H.pylori infection were selected and analyzed by LC-MS/MS. Finally, differentially expressed proteins between human gastric cancer tissue samples and lymph nodes were analyzed by real-time RT-PCR.
RESULTSColonization of H.pylori was observed in gastric tissue of gerbils as early as 3 months after H.pylori infection, and persisted till 24 months. Pathological examination of infected animals showed various histological changes including acute gastritis, atrophic gastritis, intestinal metaplasia and gastric carcinoma. Seventy-eight differentially expressed proteins were identified by proteomics analysis, among which 36 proteins were up-regulated and 42 were down-regulated. Analyzed by LC-MS/MS, ten proteins were identified, including lactate dehydrogenase, ATP synthase, fatty acid-binding protein, COX5B, peroxiredoxin-4, peroxide reductase, transgelin, succinyl-CoA ligase, keratin and protein disulfide-isomerase A2, among which transgelin, ATP synthase and lactate dehydrogenase were highly expressed in human gastric carcinoma and lymph nodes.
CONCLUSIONSH.pylori infection induces the expression of transgelin, ATP synthase and lactate dehydrogenase, implying possible roles in the pathogenesis of gastric diseases including cancer.
Animals ; Disease Models, Animal ; Gastritis ; microbiology ; pathology ; Gerbillinae ; Helicobacter Infections ; complications ; metabolism ; Helicobacter pylori ; genetics ; Humans ; L-Lactate Dehydrogenase ; metabolism ; Male ; Metaplasia ; Microfilament Proteins ; metabolism ; Muscle Proteins ; metabolism ; Proteomics ; Proton-Translocating ATPases ; metabolism ; RNA, Ribosomal, 16S ; analysis ; Stomach Neoplasms ; metabolism ; microbiology ; Tandem Mass Spectrometry