1.Construction and biological characterization of a Proteus mirabilis strain with modABC gene deletion.
Yi HUANG ; Xin DING ; Nan HUANG ; Canxiong CHEN ; Xiaoyan DENG
Journal of Southern Medical University 2023;43(5):859-867
OBJECTIVE:
To construct a modABC gene knockout strain of Proteus mirabilis and explore the effect of modABC gene deletion on biological characteristics of Proteus mirabilis.
METHODS:
Fusion PCR was used to obtain the fusion gene of modABC and the kanamycin-resistant gene Kn, which was ligated with the suicide vector pCVD442 and transduced into Proteus mirabilis. The modABC gene knockout strain of Proteus mirabilis was obtained after homologous recombination with the suicide vector. PCR and Sanger sequencing were used to identify genomic deletion of modABC gene in the genetically modified strain. The concentration of molybdate in the wild-type and gene knockout strains was determined using inductively coupled plasma mass spectrometry (ICP-MS), and their survival ability in LB medium was compared under both aerobic and anaerobic conditions.
RESULTS:
PCR and sanger sequencing confirmed genomic deletion of modABC gene in the obtained Proteus mirabilis strain. The concentration of intracellular molybdenum in the modABC gene knockout strain was 1.22 mg/kg, significantly lower than that in the wild-type strain (1.46 mg/kg, P < 0.001). Under the aerobic condition, the modABC gene knockout strain grown in LB medium showed no significant changes in survival ability compared with the wild-type strain, but its proliferation rate decreased significantly under the anaerobic condition and also when cultured in nitrate-containing LB medium under anaerobic condition.
CONCLUSION
Homologous recombination with the suicide vector can be used for modABC gene knockout in Proteus mirabilis. modABC gene participates in molybdate uptake and is associated with anaerobic growth of Proteus mirabilis in the presence of nitrate.
Humans
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Gene Deletion
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Nitrates
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Proteus mirabilis/genetics*
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Gene Knockout Techniques
2.A Core Genome Multilocus Sequence Typing Scheme for Proteus mirabilis.
Sheng Lin CHEN ; Yu Tong KANG ; Yi He LIANG ; Xiao Tong QIU ; Zhen Jun LI
Biomedical and Environmental Sciences 2023;36(4):343-352
OBJECTIVE:
A core genome multilocus sequence typing (cgMLST) scheme to genotype and identify potential risk clonal groups (CGs) in Proteus mirabilis.
METHODS:
In this work, we propose a publicly available cgMLST scheme for P. mirabilis using chewBBACA. In total 72 complete P. mirabilis genomes, representing the diversity of this species, were used to set up a cgMLST scheme targeting 1,842 genes, 635 unfinished (contig, chromosome, and scaffold) genomes were used for its validation.
RESULTS:
We identified a total of 205 CGs from 695 P. mirabilis strains with regional distribution characteristics. Of these, 159 unique CGs were distributed in 16 countries. CG20 and CG3 carried large numbers of shared and unique antibiotic resistance genes. Nine virulence genes ( papC, papD, papE, papF, papG, papH, papI, papJ, and papK) related to the P fimbrial operon that cause severe urinary tract infections were only found in CG20. These CGs require attention due to potential risks.
CONCLUSION
This research innovatively performs high-resolution molecular typing of P. mirabilis using whole-genome sequencing technology combined with a bioinformatics pipeline (chewBBACA). We found that the CGs of P. mirabilis showed regional distribution differences. We expect that our research will contribute to the establishment of cgMLST for P. mirabilis.
Genome, Bacterial
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Proteus mirabilis/genetics*
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Multilocus Sequence Typing
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Molecular Epidemiology
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Genotype
3.Etiological and molecular characteristics of diarrhea caused Proteus mirabilis.
Xiaolu SHI ; Qinghua HU ; Yiman LIN ; Yaqun QIU ; Yinghui LI ; Min JIANG ; Qiongcheng CHEN
Chinese Journal of Epidemiology 2014;35(6):724-728
OBJECTIVETo analyze the etiological characteristics, virulence genes and plasmids that carrying diarrhea-causing Proteus mirabilis and to assess their relationship with drug resistance and pathogenicity.
METHODSProteus mirabilis coming from six different sources (food poisoning, external environment and healthy people) were analyzed biochemically, on related susceptibility and pulsed-field gel electrophoresis (PFGE). Virulence genes were detected by PCR. Plasmids were extracted and sequenced after gel electrophoresis purification.
RESULTSThe biochemical characteristics of Proteus mirabilis from different sources seemed basically the same, and each of them showed having common virulence genes, as ureC, rsmA, hpmA and zapA. However, the PFGE patterns and susceptibility of these strains were different, so as the plasmids that they carried. Plasmid that presented in the sequenced strain showed that the 2 683 bp length plasmid encodes qnrD gene was associated with the quinolone resistance.
CONCLUSIONEtiological characteristics and molecular characteristics of Proteus mirabilis gathered from different sources, were analyzed. Results indicated that traditional biochemical analysis and common virulence gene identification might be able to distinguish the strains with different sources. However, PFGE and plasmids analysis could distinguish the sources of strains and to identify those plasmids that commonly carried by the drug-resistant strains. These findings also provided theoretical basis for further study on the nature of resistance and pathogenicity in Proteus mirabilis.
Diarrhea ; microbiology ; Drug Resistance, Bacterial ; Genes, Bacterial ; Humans ; Plasmids ; genetics ; Proteus mirabilis ; genetics ; pathogenicity ; Virulence Factors ; genetics
4.C-reactive protein as an indicator of inflammatory responses to experimentally induced cystitis in dogs.
Kyoung Won SEO ; Jong Bok LEE ; Jin Ok AHN ; Hee Woo LEE ; Cheol Yong HWANG ; Hwa Young YOUN ; Chang Woo LEE
Journal of Veterinary Science 2012;13(2):179-185
The aim of this study was to demonstrate and assess C-reactive protein (CRP) changes in dogs with induced bacterial cystitis with or without antibiotics. We also evaluated availability of CRP levels to serve as an indicator for monitoring or diagnosing bacterial cystitis. Serial CRP concentrations in dogs with induced bacterial cystitis were higher than those of controls (p < 0.001). CRP concentrations peaked on day 7 and gradually decreased thereafter. In the treatment group, CRP concentrations decreased after medication compared to the untreated group (p = 0.032). CRP levels had a linear correlation with urine white blood cell counts among all groups (r = 0.837, p < 0.001, n = 140). Compared to the negative urine culture group, dogs with positive urine culture results had higher CRP concentrations (median 43.8 mg/L vs. 5.9 mg/L; p < 0.001). Area under the receiver operating characteristic curve was 0.955; when cut-off value was 12.2 mg/L, CRP measurements were found to have a sensitivity of 92.3% and specificity of 86.4%. This result indicates that rapid increases of CRP occurred after inducing bacterial cystitis and CRP may be a useful indicator for monitoring or diagnosing canine bacterial cystitis together with sediment urinalysis and urine bacterial culture.
Amoxicillin-Potassium Clavulanate Combination/therapeutic use
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Animals
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Anti-Bacterial Agents/therapeutic use
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C-Reactive Protein/genetics/*metabolism
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Cystitis/metabolism/*veterinary
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Dogs
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Gene Expression Regulation/*physiology
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Inflammation/*metabolism
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Male
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Proteus Infections/drug therapy/metabolism/microbiology/*veterinary
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Proteus mirabilis
5.Comparison of 3 Phenotypic-detection Methods for Identifying Plasmid-mediated AmpC beta-lactamase-producing Escherichia coli, Klebsiella pneumoniae, and Proteus mirabilis Strains.
Wookeun LEE ; Bochan JUNG ; Seong Geun HONG ; Wonkeun SONG ; Seok Hoon JEONG ; Kyungwon LEE ; Hyo Sun KWAK
The Korean Journal of Laboratory Medicine 2009;29(5):448-454
BACKGROUND: Plasmid-mediated AmpC beta-lactamases (PABLs) have been detected in the strains of Escherichia coli, Klebsiella spp., Proteus mirabilis, and Salmonella spp. PABLs may be difficult to detect and might interfere in the therapeutic and infection-control processes. Although several PABL-detection methods based on phenotypes have been reported, the Clinical and Laboratory Standards Institute currently does not recommend a routine detection method for PABLs. The aim of this study is to compare the performances of 3 phenotypic PABL detection methods. METHODS: Total 276 non-duplicated clinical isolates of E. coli (N=97), K. pneumoniae (N=136), and P. mirabilis (N=43) were collected from 14 hospitals in Korea between April and June 2007 in a non-consecutive and non-random manner. Multiplex PCR was performed to detect the PABL genes. Further, 3 phenotypic detection methods-cephamycin-Hodge test, Tris-EDTA (TE) disk test, and combination-disk test with 3-aminophenylboronic acid (BA)-were performed using cefoxitin and cefotetan disks. RESULTS: PABL genes were detected by multiplex PCR in 122/276 isolates, including 14/97 E. coli, 105/136 K. pneumoniae, and 3/43 P. mirabilis isolates. The combination-disk test with BA showed higher sensitivity (98.4%), specificity (92.2%), and efficiency (96.3%) than the cephamycin-Hodge (76.2%, 96.1%, and 88.6%, respectively) and the TE-disk (80.3%, 91.6%, and 87.9%, respectively) tests. CONCLUSIONS: The combination-disk test with BA is a simple, efficient, and interpretable test that can be applicable in clinical laboratories involved in the detection of PABLs in clinical isolates of E. coli, K. pneumoniae, and P. mirabilis.
Anti-Bacterial Agents/pharmacology
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Bacterial Proteins/*analysis
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Cefotetan/pharmacology
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Cefoxitin/pharmacology
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Disk Diffusion Antimicrobial Tests/*methods
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Escherichia coli/genetics/*isolation & purification
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Humans
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Klebsiella pneumoniae/genetics/*isolation & purification
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Phenotype
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Plasmids
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Proteus mirabilis/genetics/*isolation & purification
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Sensitivity and Specificity
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beta-Lactamases/*analysis
6.Extended-Spectrum Beta-Lactamase-Producingin Retail Chicken Meat in Singapore.
Eugene Jz LIM ; Si Xian HO ; Delphine Yh CAO ; Quek Choon LAU ; Tse Hsien KOH ; Li Yang HSU
Annals of the Academy of Medicine, Singapore 2016;45(12):557-559
Animals
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Chickens
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microbiology
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Cross-Sectional Studies
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Enterobacteriaceae
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genetics
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isolation & purification
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Escherichia coli
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genetics
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isolation & purification
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Escherichia coli Proteins
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genetics
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Food Microbiology
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Klebsiella pneumoniae
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genetics
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isolation & purification
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Meat
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microbiology
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Multiplex Polymerase Chain Reaction
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Proteus mirabilis
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genetics
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isolation & purification
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Raw Foods
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microbiology
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Singapore
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beta-Lactamases
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genetics
7.An Increase in the Clinical Isolation of Acquired AmpC beta-Lactamase-Producing Klebsiella pneumoniae in Korea from 2007 to 2010.
Min Jeong PARK ; Taek Kyung KIM ; Wonkeun SONG ; Jae Seok KIM ; Han Sung KIM ; Jacob LEE
Annals of Laboratory Medicine 2013;33(5):353-355
We investigated the occurrence and genetic basis of AmpC beta-lactamase (AmpC)-mediated antibiotic resistance, by examining Escherichia coli, Klebsiella pneumoniae, and Proteus mirabilis isolates at a university hospital, from 2007 to 2010. The ampC genes were detected by multiplex AmpC PCR, and AmpC-positive strains were subjected to DNA sequencing. Extended-spectrum beta-lactamase (ESBL) production was assessed using the ESBL disk test based on the utilization of boronic acid. Carbapenem-resistant isolates were further investigated by the modified Hodge test, a carbapenemase inhibition test and SDS-PAGE experiments. AmpC expression was detected in 1.6% of E. coli (39 DHA-1, 45 CMY-2, and 1 CMY-1) isolates, 7.2% of K. pneumoniae (39 DHA-1, 45 CMY-2, and 1 CMY-1) isolates, and 2.5% of P. mirabilis (8 CMY-2 and 1 CMY-1) isolates. Of the 198 acquired AmpC producers, 58 isolates (29.3%) also produced an ESBL enzyme. Among the acquired AmpC-producing K. pneumoniae isolates, the minimum inhibitory concentration (MIC) MIC50/MIC90 values for cefoxitin, cefotaxime, cefepime, imipenem, and meropenem were >32/>32, 16/>32, 1/16, 0.25/0.5, and <0.125/0.125 microg/mL, respectively. The MIC values for carbapenem were > or =2 microg/mL for 2 K. pneumoniae isolates, both of which carried the blaDHA-1 gene with a loss of OmpK36 expression, but were negative for carbapenemase production. The acquisition of AmpC-mediated resistance in K. pneumoniae isolates increased, as did the proportion of AmpC and ESBL co-producers among the hospital isolates. The accurate identification of isolates producing AmpCs and ESBLs may aid in infection control and will assist physicians in selecting an appropriate antibiotic regimen.
Anti-Bacterial Agents/pharmacology
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Bacterial Proteins/*genetics
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DNA, Bacterial/genetics
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Enterobacteriaceae Infections/*epidemiology/*microbiology
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Escherichia coli/drug effects/enzymology/isolation & purification
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Hospitals, University/statistics & numerical data
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Humans
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Klebsiella pneumoniae/drug effects/enzymology/isolation & purification/*physiology
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Microbial Sensitivity Tests
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Multiplex Polymerase Chain Reaction
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Proteus mirabilis/drug effects/enzymology/isolation & purification
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Republic of Korea/epidemiology
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beta-Lactamases/*genetics