1.Positive Diversifying Selection on the Plasmodium falciparum surf4.1 Gene in Thailand
Phonepadith Xangsayarath ; Morakot Kaewthamasorn ; Kazuhide Yahata ; Shusuke Nakazawa ; Jetsumon Sattabongkot ; Rachanee Udomsangpetch ; Osamu Kaneko
Tropical Medicine and Health 2012;():-
Plasmodium falciparum SURFIN4.1 is a type I transmembrane protein thought to locate on the merozoite surface and to be responsible for a reversible adherence to the erythrocyte before invasion. In this study, we evaluated surf4.1 gene segment encoding extracellular region for polymorphism, the signature of positive selection, the degree of linkage disequilibrium, and temporal change in allele frequency distribution in P. falciparum isolates from Thailand in 1988–89, 2003, and 2005. We found that SURFIN4.1 is highly polymorphic, particularly at the C-terminal side of the variable region located just before a predicted transmembrane region. A signature of positive diversifying selection on the variable region was detected by multiple tests and, to a lesser extent, on conserved N-terminally located cysteine-rich domain by Tajima’s D test. Linkage disequilibrium between sites over a long distance (> 1.5 kb) was detected, and multiple SURFIN4.1 haplotype sequences detected in 1988/89 still circulated in 2003. Few of the single amino acid polymorphism allele frequency distributions were significantly different between the 1988/89 and 2003 groups, suggesting that the frequency distribution of SURFIN4.1 extracellular region remained stable over 14 years.
2.Positive Diversifying Selection on the Plasmodium falciparum surf4.1 Gene in Thailand
Phonepadith Xangsayarath ; Morakot Kaewthamasorn ; Kazuhide Yahata ; Shusuke Nakazawa ; Jetsumon Sattabongkot ; Rachanee Udomsangpetch ; Osamu Kaneko
Tropical Medicine and Health 2012;40(3):79-87
Plasmodium falciparum SURFIN4.1 is a type I transmembrane protein thought to locate on the merozoite surface and to be responsible for a reversible adherence to the erythrocyte before invasion. In this study, we evaluated surf4.1 gene segment encoding extracellular region for polymorphism, the signature of positive selection, the degree of linkage disequilibrium, and temporal change in allele frequency distribution in P. falciparum isolates from Thailand in 1988–89, 2003, and 2005. We found that SURFIN4.1 is highly polymorphic, particularly at the C-terminal side of the variable region located just before a predicted transmembrane region. A signature of positive diversifying selection on the variable region was detected by multiple tests and, to a lesser extent, on conserved N-terminally located cysteine-rich domain by Tajima’s D test. Linkage disequilibrium between sites over a long distance (> 1.5 kb) was detected, and multiple SURFIN4.1 haplotype sequences detected in 1988/89 still circulated in 2003. Few of the single amino acid polymorphism allele frequency distributions were significantly different between the 1988/89 and 2003 groups, suggesting that the frequency distribution of SURFIN4.1 extracellular region remained stable over 14 years.
3.Factors contributing to a measlesoutbreak in a hard-to-reach rural villagein Xaisomboun Province, Lao People’s Democratic Republic
Vannida Vannida Douangboupha ; Philippa L. Binns ; Bouaphanh Khamphaphongphane ; Virasack Som Oulay ; Khanxay Sengsaiya ; Thounchay Boupphaphanh ; Phonepadith Xangsayarath
Western Pacific Surveillance and Response 2022;13(3):1-8
Objective:
An increase in measles cases was reported in the northwest of the Lao People’s Democratic Republic beginning in January 2019, with outbreaks quickly spreading throughout the country. Following identification of two laboratoryconfirmed cases in Xaisomboun Province, we conducted an outbreak investigation to identify factors contributing to the measles outbreak in hard-to-reach Village X.
Methods:
Active case-finding was undertaken at the provincial hospital and primary health care centre via a retrospective search through admission logbooks and house-to-house surveys in Village X and surrounding villages. Clinical samples were collected from suspected cases, and data were collected using a standard case investigation form. Vaccine coverage data were reviewed.
Results:
Of the 40 suspected measles cases with rash onset during 12 February–27 April 2019, 83% (33/40) resided in Village X and 98% (39/40) were of Hmong–Lu Mien ethnicity. Ages ranged from 22 days to 5 years, with 70% (28) aged <24 months. Almost half of cases aged 9 to <18 months (5/11) and 67% (8/12) of cases aged ≥24 months had received a measles-containing vaccine (MCV). Reported MCV coverage in Xaisomboun for children aged <1 year in 2017–2018 was <50%. In 55% (22/40) of cases, case notification was delayed by ≥6 days. The final case classification comprised 10% laboratory-confirmed, 20% clinically compatible, 60% epidemiologically linked and 10% non-cases.
Discussion
This measles outbreak was likely associated with low immunization coverage, compounded by delays in reporting. Effective strategies are needed to address beliefs about and health literacy barriers to immunization and measles awareness. Such strategies may improve MCV coverage and early diagnosis, enabling timely public health interventions and reducing mortality and morbidity.