1.Progress in research on molecular biology and application in dominant antigens ESAT6 and CFP10 of TB vaccine.
Journal of Biomedical Engineering 2012;29(2):392-396
As the dominant antigens, early secreted antigenic target 6 (ESAT6, E6) and culture filtrate protein 10 (CFP10, C10) had once been the focus of tuberculosis (TB) vaccine due to their capability of inducing strong cell immune response in the host. They are also endowed with promising future of prevention against and diagnosis of TB. In this review, we systematically introduce recent research progress of E6 and C10, especially in structure-function, biological characteristics, protein expression and secretion, host immunity and vaccine development, and the prospects of their application are also discussed.
Antigens, Bacterial
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chemistry
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genetics
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immunology
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Bacterial Proteins
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chemistry
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genetics
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immunology
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Humans
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Immunodominant Epitopes
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immunology
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Molecular Biology
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Peptide Fragments
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chemistry
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genetics
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immunology
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Tuberculosis Vaccines
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genetics
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immunology
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Vaccines, DNA
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immunology
2.An antibody reactive to the Gly63-Lys68 epitope of NT-proBNP exhibits O-glycosylation-independent binding.
Yujean LEE ; Hyori KIM ; Junho CHUNG
Experimental & Molecular Medicine 2014;46(9):e114-
The N-terminal fragment of prohormone brain natriuretic peptide (NT-proBNP) is a commonly used biomarker for the diagnosis of congestive heart failure, although its biological function is not well known. NT-proBNP exhibits heavy O-linked glycosylation, and it is quite difficult to develop an antibody that exhibits glycosylation-independent binding. We developed an antibody that binds to the recombinant NT-proBNP protein and its deglycosylated form with similar affinities in an enzyme immunoassay. The epitope was defined as Gly63-Lys68 based on mimetic peptide screening, site-directed mutagenesis and a competition assay with a peptide mimotope. The nearest O-glycosylation residues are Thr58 and Thr71; therefore, four amino acid residues intervene between the epitope and those residues in both directions. In conclusion, we report that an antibody reactive to Gly63-Lys68 of NT-proBNP exhibits O-glycosylation-independent binding.
Amino Acid Sequence
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Animals
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Antibodies/*immunology
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Antigen-Antibody Reactions
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Epitope Mapping
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Epitopes/chemistry/genetics/*immunology
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Glycosylation
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HEK293 Cells
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Heart Failure/immunology
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Humans
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Molecular Sequence Data
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Mutagenesis, Site-Directed
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Natriuretic Peptide, Brain/chemistry/genetics/*immunology
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Peptide Fragments/chemistry/genetics/*immunology
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Rabbits
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Recombinant Fusion Proteins/chemistry/genetics/immunology
3.The epitope study on the SARS-CoV nucleocapsid protein.
Shuting LI ; Liang LIN ; Hao WANG ; Jianning YIN ; Yan REN ; Zhe ZHAO ; Jie WEN ; Cuiqi ZHOU ; Xumin ZHANG ; Xiaolei LI ; Jingqiang WANG ; Zhengfeng ZHOU ; Jinxiu LIU ; Jianmin SHAO ; Tingting LEI ; Jianqiu FANG ; Ningzhi XU ; Siqi LIU
Genomics, Proteomics & Bioinformatics 2003;1(3):198-206
The nucleocapsid protein (N protein) has been found to be an antigenic protein in a number of coronaviruses. Whether the N protein in severe acute respiratory syndrome-associated coronavirus (SARS-CoV) is antigenic remains to be elucidated. Using Western blot and Enzyme-linked Immunosorbent Assay (ELISA), the recombinant N proteins and the synthesized peptides derived from the N protein were screened in sera from SARS patients. All patient sera in this study displayed strong positive immunoreactivities against the recombinant N proteins, whereas normal sera gave negative immunoresponses to these proteins, indicating that the N protein of SARS-CoV is an antigenic protein. Furthermore, the epitope sites in the N protein were determined by competition experiments, in which the recombinant proteins or the synthesized peptides competed against the SARS-CoV proteins to bind to the antibodies raised in SARS sera. One epitope site located at the C-terminus was confirmed as the most antigenic region in this protein. A detailed screening of peptide with ELISA demonstrated that the amino sequence from Codons 371 to 407 was the epitope site at the C-terminus of the N protein. Understanding of the epitope sites could be very significant for developing an effective diagnostic approach to SARS.
Blotting, Western
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Enzyme-Linked Immunosorbent Assay
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Epitopes
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chemistry
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immunology
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Humans
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Nucleocapsid Proteins
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chemistry
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immunology
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Peptide Fragments
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chemical synthesis
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Plasmids
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Recombinant Proteins
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immunology
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isolation & purification
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metabolism
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SARS Virus
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genetics
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immunology
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metabolism
4.Expression and purification of different segments from HCoV-NL63 nucleocapsid protein and their application in detection of antibodies.
Min ZHAO ; Ting-Ying ZHANG ; Wei-Min ZHOU ; Guo-Xia ZHAO ; Ling-Lin ZHANG ; Ji-Min GAO ; Wen-Jie TAN
Chinese Journal of Virology 2011;27(3):244-249
Prokaryotic expression plasmids carrying N-terminal(1-163aa) and C-terminal(141-306aa) gene of HCoV-NL63 nucleocapsid protein were constructed with pET-30a(+) vector. Consequently, we prepared two purified proteins, Np and Cp, respectively, and established a Western blotting-based line assay (WBLA) for detection of antibodies against HCoV-NL63 using three purified proteins: Np , Cp and Nf, a full-length HCoV-NL63 nucleocapsid protein as previously reported. We detected anti-HCoV-NL63 antibodies among 50 sera samples collected from adult for health-examination by WBLA. The results showed that: 25 (50%), 27 (54%), 36 (72%) of 50 sera were indentified as anti-HCoV-NL63 antibody positive when the antigen was from Nf, Np and Cp, respectively. Among these sera with positive anti-HCoV-NL63 antibody,Cp showed highest antibody positive rate in WBLA,and consistent rates of detection were 64% between Nf and Np, 54% between Nf and Cp, 54% between Np and Cp. Our study provides the foundation for development of HCoV-NL63 serological detection reagents and an experimental tool for immunological research of HCoV-NL63 infection.
Adult
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Antibodies, Viral
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blood
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Blotting, Western
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Coronavirus
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chemistry
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immunology
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Humans
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Nucleocapsid Proteins
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genetics
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immunology
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isolation & purification
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Peptide Fragments
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genetics
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isolation & purification
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Recombinant Proteins
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biosynthesis
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immunology
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isolation & purification
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Serologic Tests
5.Analyses of the TCR repertoire of MHC class II-restricted innate CD4+ T cells.
Byung Hyun KANG ; Hye Sook MIN ; You Jeong LEE ; Bomi CHOI ; Eun Ji KIM ; Jonghoon LEE ; Jeong Rae KIM ; Kwang Hyun CHO ; Tae Jin KIM ; Kyeong Cheon JUNG ; Seong Hoe PARK
Experimental & Molecular Medicine 2015;47(3):e154-
Analysis of the T-cell receptor (TCR) repertoire of innate CD4+ T cells selected by major histocompatibility complex (MHC) class II-dependent thymocyte-thymocyte (T-T) interaction (T-T CD4+ T cells) is essential for predicting the characteristics of the antigens that bind to these T cells and for distinguishing T-T CD4+ T cells from other types of innate T cells. Using the TCRmini Tg mouse model, we show that the repertoire of TCRalpha chains in T-T CD4+ T cells was extremely diverse, in contrast to the repertoires previously described for other types of innate T cells. The TCRalpha chain sequences significantly overlapped between T-T CD4+ T cells and conventional CD4+ T cells in the thymus and spleen. However, the diversity of the TCRalpha repertoire of T-T CD4+ T cells seemed to be restricted compared with that of conventional CD4+ T cells. Interestingly, the frequency of the parental OT-II TCRalpha chains was significantly reduced in the process of T-T interaction. This diverse and shifted repertoire in T-T CD4+ T cells has biological relevance in terms of defense against diverse pathogens and a possible regulatory role during peripheral T-T interaction.
Amino Acid Sequence
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Animals
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Antigens, Surface/metabolism
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CD4-Positive T-Lymphocytes/cytology/*immunology/*metabolism
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Cell Communication
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Cell Differentiation/genetics/immunology
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Clonal Evolution
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Histocompatibility Antigens Class II/*immunology
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*Immunity, Innate
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Immunophenotyping
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Lymphocyte Count
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Mice
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Mice, Knockout
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Mice, Transgenic
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Peptide Fragments/chemistry
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Phenotype
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Receptors, Antigen, T-Cell/chemistry/*genetics/metabolism
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Receptors, Antigen, T-Cell, alpha-beta/chemistry/genetics
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Spleen/cytology
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Thymocytes/cytology/immunology/metabolism
6.A strategy for searching antigenic regions in the SARS-CoV spike protein.
Yan REN ; Zhengfeng ZHOU ; Jinxiu LIU ; Liang LIN ; Shuting LI ; Hao WANG ; Ji XIA ; Zhe ZHAO ; Jie WEN ; Cuiqi ZHOU ; Jingqiang WANG ; Jianning YIN ; Ningzhi XU ; Siqi LIU
Genomics, Proteomics & Bioinformatics 2003;1(3):207-215
In the face of the worldwide threat of severe acute respiratory syndrome (SARS) to human life, some of the most urgent challenges are to develop fast and accurate analytical methods for early diagnosis of this disease as well as to create a safe anti-viral vaccine for prevention. To these ends, we investigated the antigenicity of the spike protein (S protein), a major structural protein in the SARS-coronavirus (SARS-CoV). Based upon the theoretical analysis for hydrophobicity of the S protein, 18 peptides were synthesized. Using Enzyme-Linked Immunosorbent Assay (ELISA), these peptides were screened in the sera from SARS patients. According to these results, two fragments of the S gene were amplified by PCR and cloned into pET-32a. Both S fragments were expressed in the BL-21 strain and further purified with an affinity chromatography. These recombinant S fragments were confirmed to have positive cross-reactions with SARS sera, either by Western blot or by ELISA. Our results demonstrated that the potential epitope regions were located at Codons 469-882 in the S protein, and one epitope site was located at Codons 599-620. Identification of antigenic regions in the SARS-CoV S protein may be important for the functional studies of this virus or the development of clinical diagnosis.
Antigens, Viral
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immunology
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Chromatography, High Pressure Liquid
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Cloning, Molecular
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Electrophoresis, Polyacrylamide Gel
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Enzyme-Linked Immunosorbent Assay
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Genetic Vectors
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Humans
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Mass Spectrometry
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Membrane Glycoproteins
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genetics
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immunology
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metabolism
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Molecular Weight
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Peptide Fragments
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chemistry
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Recombinant Proteins
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genetics
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immunology
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SARS Virus
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genetics
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immunology
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metabolism
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Spike Glycoprotein, Coronavirus
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Viral Envelope Proteins
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genetics
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immunology
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metabolism
7.Expression of recombinant human cytomegalovirus fusion proteins pp150/MDBP fragments and its application.
Da-Dong GUO ; Xue-Qin GAO ; Jin-Xiang HAN ; Yi LIU ; Hua-Ning ZHANG
Chinese Journal of Biotechnology 2006;22(6):956-961
Human cytomegalovirus (HCMV) infection is an ubiquitous herpesvirus disease in human populations. It is rarely pathogenic to healthy adults, yet it may cause severe outcome to organ transplant recipients, the immunocompromised individuals and pregnant women. Using DNA from HCMV AD169 strain as template, the UL32 gene encoding pp150 protein fragment and the UL57 gene encoding MDBP protein fragment were amplified by PCR technique. After the construction of cloning vector pMD18-T-UL32, pMD18-T-UL57, pMD18-T-UL32/UL57 and expression vector pET-11a-UL32/UL57, the recombinant fusion proteins pp150/MDBP were induced with IPTG in BL21 host strain. The results showed that the relative molecular weight of recombinant fusion proteins pp150/MDBP is about 27 kD, the product of fusion proteins takes 17.45% in the total proteins in host bacteria, the analytical result was positive to the fusion proteins pp150/MDBP via Western blot technique, while the purified recombinant fusion proteins have strong antigenicity detected by ELISA and protein chip compared with whole virus antigens from HCMV. It was demonstrated that when used for the detection of serum from the clinical patients it has the same detection rate compared with the whole virus antigen. It needs further research for application.
Cytomegalovirus
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DNA-Binding Proteins
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chemistry
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Electrophoresis, Polyacrylamide Gel
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Enzyme-Linked Immunosorbent Assay
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Gene Expression
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Genetic Vectors
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genetics
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Humans
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Peptide Fragments
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blood
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genetics
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immunology
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isolation & purification
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Phosphoproteins
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chemistry
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Plasmids
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genetics
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Polymerase Chain Reaction
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Recombinant Fusion Proteins
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blood
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genetics
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immunology
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isolation & purification
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Transcription Factors
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chemistry
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Viral Matrix Proteins
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chemistry
8.Purification and functional analysis of Helicobacter pylori UreB protein fragment.
Xiao-peng YUAN ; Quan-ming ZHOU ; Yang BAI ; Jun YANG ; Ying GUO ; Wei-jun ZHANG ; Zheng-xiang LIU
Journal of Southern Medical University 2007;27(7):959-962
OBJECTIVETo establish an effective method for purification of Helicobacter pylori UreB fragment and conduct functional analysis of the purified protein.
METHODSThe protein fragment expression was induced by IPTG and the expressed protein was purified through affinity chromatography and ion-exchange chromatography. The purity of the fragment was determined by high-performance liquid chromatography (HPLC), and the specific biological activity of the purified fragment was assayed by urease activity inhibition test.
RESULTSThe protein fragment was highly expressed in E. coli with a purity over 91%. The protein fragment showed highly specific biological activity and the specific antibody induced by this fragment in rabbits could inhibit the activity of urease in a dose-dependent manner.
CONCLUSIONThe UreB fragment with high purity and biological activity can be applied for further studies.
Amino Acid Sequence ; Animals ; Antibody Specificity ; Bacterial Proteins ; chemistry ; Bacterial Vaccines ; biosynthesis ; chemistry ; immunology ; isolation & purification ; Chromatography, High Pressure Liquid ; Electrophoresis ; Escherichia coli ; genetics ; Helicobacter pylori ; genetics ; immunology ; Molecular Sequence Data ; Peptide Fragments ; biosynthesis ; chemistry ; immunology ; isolation & purification ; Rabbits ; Urease ; antagonists & inhibitors