1.Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage
Shen YINGBO ; Zhang RONG ; Shao DONGYAN ; Yang LU ; Lu JIAYUE ; Liu CONGCONG ; Wang XUEYANG ; Jiang JUNYAO ; Wang BOXUAN ; Wu CONGMING ; Parkhill JULIAN ; Wang YANG ; R.Walsh TIMOTHY ; F.Gao GEORGE ; Shen ZHANGQI
Genomics, Proteomics & Bioinformatics 2022;(6):1168-1179
Emergence of the colistin resistance gene,mcr-1,has attracted worldwide attention.Despite the prevalence of mcr-1-positive Escherichia coli(MCRPEC)strains in human carriage showing a significant decrease between 2016 and 2019,genetic differences in MCRPEC strains remain largely unknown.We therefore conducted a comparative genomic study on MCRPEC strains from fecal samples of healthy human subjects in 2016 and 2019.We identified three major differences in MCRPEC strains between these two time points.First,the insertion sequenceISApll1 was often deleted and the percentage of mcr-1-carrying IncI2 plasmids was increased in MCRPEC strains in 2019.Second,the antibiotic resistance genes(ARGs),aac(3)-Ⅳa and blaCTX-M-1,emerged and coexisted with mcr-1 in 2019.Third,MCRPEC strains in 2019 contained more viru-lence genes,resulting in an increased proportion of extraintestinal pathogenic E.coli(ExPEC)strains(36.1％)in MCRPEC strains in 2019 compared to that in 2016(10.5％),implying that these strains could occupy intestinal ecological niches by competing with other commensal bacteria.Our results suggest that despite the significant reduction in the prevalence of MCRPEC strains in humans from 2016 to 2019,MCRPEC exhibits increased resistance to other clinically important ARGs and contains more virulence genes,which may pose a potential public health threat.
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