1.Xpert CARBA-R Assay for the Detection of Carbapenemase-Producing Organisms in Intensive Care Unit Patients of a Korean Tertiary Care Hospital.
Do Kyun KIM ; Hyoung Sun KIM ; Naina PINTO ; Jongsoo JEON ; Roshan D'SOUZA ; Myung Sook KIM ; Jun Yong CHOI ; Dongeun YONG ; Seok Hoon JEONG ; Kyungwon LEE
Annals of Laboratory Medicine 2016;36(2):162-165
Carbapenemase-producing organisms (CPO) are rapidly disseminating worldwide, and their presence in tertiary care hospitals poses a significant threat to the management of nosocomial infections. There is a need to control CPO, especially in intensive care unit (ICU) patients, because these organisms are resistant to most beta-lactam antibiotics and are easily transmitted. At present, the identification of CPO is time-consuming; hence, this study focused on the use of the Xpert CARBA-R assay (Cepheid, USA) to determine intestinal colonization rates of CPO in patients admitted to the ICU of a tertiary care hospital in Korea. Forty clinical stool samples were collected and inoculated both in a CARBA-R cartridge and in conventional culture plates. The CARBA-R assay required only ~one hour to screen CPO, while the time required for conventional culture was over three days. We also found that the prevalences of intestinal colonization by carbapenem-resistant organisms and Enterobacteriaceae were 17.5% (7 out of 40) and 7.5% (3 out of 40), respectively. Among the colonizing strains, three that contained carbapenemase, including Klebsiella pneumonia carbapenemase (KPC), and imipenem (IMP) and Verona integron-mediated metallo-beta-lactamase (VIM) were found. With its convenience, the Xpert CARBA-R assay can be included in CPO surveillance strategies.
Anti-Bacterial Agents/pharmacology
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Bacterial Proteins/*genetics/metabolism
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DNA, Bacterial/analysis
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Drug Resistance, Multiple, Bacterial/genetics
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Enterobacteriaceae/drug effects/genetics/*isolation & purification
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Feces/microbiology
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Humans
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Imipenem/pharmacology
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Intensive Care Units
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Klebsiella pneumoniae/drug effects/genetics/*isolation & purification
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Reagent Kits, Diagnostic
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Real-Time Polymerase Chain Reaction
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Republic of Korea
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Tertiary Healthcare
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beta-Lactamases/*genetics/metabolism
2.Adjustment of Modified Carbapenem Inactivation Method Conditions for Rapid Detection of Carbapenemase-Producing Acinetobacter baumannii
Thao Nguyen VU ; Jung Hyun BYUN ; Roshan D'SOUZA ; Naina Adren PINTO ; Le Phuong NGUYEN ; Dongeun YONG ; Yunsop CHONG
Annals of Laboratory Medicine 2020;40(1):21-26
BACKGROUND:
The existing modified carbapenem inactivation methods (mCIMs) recommended by the CLSI for detecting carbapenemase production have not been applicable for Acinetobacter baumannii. We evaluated the influence of matrices used in mCIMs and CIMTris on the stability of the disks for detecting carbapenemase producers and suggested optimal mCIM conditions for detecting carbapenemase-producing A. baumannii.
METHODS:
Seventy-three A. baumannii isolates characterized for antimicrobial susceptibility and carbapenemase encoding genes were tested for carbapenemase production using mCIM and CIMTris. The influence of the matrices (Tryptic soy broth [TSB] and Tris-HCl) used in these methods on the stability of the meropenem (MEM) disk was also evaluated. The mCIM conditions were adjusted to enhance screening sensitivity and specificity for detecting carbapenemase-producing A. baumannii.
RESULTS:
The matrices had an impact on the stability of the MEM disk after the incubation period (two or four hrs). TSB nutrient broth is an appropriate matrix for mCIM compared with Tris-HCl pH 7.6, which leads to the loss of MEM activity in CIMTris. The sensitivity and the specificity of the optimal mCIM were both 100%.
CONCLUSIONS
We established optimal mCIM conditions for simple, accurate, and reproducible detection of carbapenemase-producing A. baumannii.
3.Establishing Quality Control Ranges for Antimicrobial Susceptibility Testing of Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus aureus: A Cornerstone to Develop Reference Strains for Korean Clinical Microbiology Laboratories.
Sung Kuk HONG ; Seung Jun CHOI ; Saeam SHIN ; Wonmok LEE ; Naina PINTO ; Nari SHIN ; Kwangjun LEE ; Seong Geun HONG ; Young Ah KIM ; Hyukmin LEE ; Heejung KIM ; Wonkeun SONG ; Sun Hwa LEE ; Dongeun YONG ; Kyungwon LEE ; Yunsop CHONG
Annals of Laboratory Medicine 2015;35(6):635-638
Quality control (QC) processes are being performed in the majority of clinical microbiology laboratories to ensure the performance of microbial identification and antimicrobial susceptibility testing by using ATCC strains. To obtain these ATCC strains, some inconveniences are encountered concerning the purchase cost of the strains and the shipping time required. This study was focused on constructing a database of reference strains for QC processes using domestic bacterial strains, concentrating primarily on antimicrobial susceptibility testing. Three strains (Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus aureus) that showed legible results in preliminary testing were selected. The minimal inhibitory concentrations (MICs) and zone diameters (ZDs) of eight antimicrobials for each strain were determined according to the CLSI M23. All resulting MIC and ZD ranges included at least 95% of the data. The ZD QC ranges obtained by using the CLSI method were less than 12 mm, and the MIC QC ranges extended no more than five dilutions. This study is a preliminary attempt to construct a bank of Korean QC strains. With further studies, a positive outcome toward cost and time reduction can be anticipated.
Anti-Bacterial Agents/*pharmacology
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Asian Continental Ancestry Group
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Escherichia coli/*drug effects
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Humans
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Laboratories
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Microbial Sensitivity Tests/*methods
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Pseudomonas aeruginosa/*drug effects
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Quality Control
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Reference Values
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Republic of Korea
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Staining and Labeling
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Staphylococcus aureus/*drug effects