3.Association of single nucleotide polymorphisms of SCN1A gene with therapeutic effect of carbamazepine among ethnic Zhuang Chinese patients with epilepsy.
Jianmin HUANG ; Zhe QIAN ; Haiyan CHEN ; Qing HUANG ; Ling HUANG ; Guojun LIU ; Xionglin TANG
Chinese Journal of Medical Genetics 2019;36(3):271-274
OBJECTIVE:
To assess the association of single nucleotide polymorphisms of SCN1A gene with therapeutic effect of carbamazepine among ethnic Zhuang Chinese patients with epilepsy.
METHODS:
Peripheral blood samples were taken from 186 epileptic patients for whom 66 cases standard regime of carbamazepine treatment was effective. Genotypes of rs3812718 and rs1813502 loci of the SCN1A gene were determined by Mass ARRAY-IPLEX and matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS). Correlation between genotypes of patients and efficacy of carbamazepine treatment was analyzed.
RESULTS:
Three genotypes (GG, GA and AA) were detected at both rs3812718 and rs1813502 loci of the SCN1A gene. A significant difference was found in allelic distribution (chi-square=17.810, P=0.000) and genotypic distribution (chi-square=17.873, P=0.000) of the rs3812718 locus between the effective group and ineffective group. No such difference was found with the rs1813502 locus (chi-square=1.606, P=0.206; chi-square=1.546, P=0.462, respectively). Compared with the GG+GA genotype, the AA genotype at rs3812718 locus significantly reduced the antiepileptic efficacy of carbamazepine (OR=3.776, 95%CI: 2.007-7.105). Among the 66 patients who were responsive to carbamazepine treatment, those with the AA genotype for rs3812718 or rs1813502 shown no significant difference in their blood concentration of carbamazepine compared with those with the GG+GA genotype (t=1.562, P=0.125; t=0.843, P=0.562, respectively). rs3812718 and rs1813502 were not in strong linkage disequilibrium.
CONCLUSION
Polymorphisms of rs3812718 of the SCN1A gene is associated with carbamazepine resistance among ethnic Zhuang Chinese epilepsy patients from Baise region.
Anticonvulsants
;
Carbamazepine
;
Epilepsy
;
Genotype
;
Humans
;
NAV1.1 Voltage-Gated Sodium Channel
;
Polymorphism, Single Nucleotide
4.Analysis of clinical phenotype and SCN1A gene variant in a pedigree affected with genetic epilepsy with febrile seizures.
Shaoxia SUN ; Xiaoling LI ; Jiguo SONG ; Yufen LI ; Liyun XU ; Bing XIA ; Ying HUA ; Liping ZHU ; Junlin WANG
Chinese Journal of Medical Genetics 2021;38(8):745-748
OBJECTIVE:
To explore the genetic basis for a Chinese pedigree affected with genetic epilepsy with febrile seizures plus (GEFS+).
METHODS:
Clinical data of the proband and his family members were collected. Following extraction of genomic DNA, the proband was subjected to high-throughput sequencing. Candidate variant was verified by Sanger sequencing of the proband and other family members.
RESULTS:
The pedigree, including 6 patients with febrile seizures from 3 generations, was diagnosed with typical GEFS+. Among them, 2 had febrile seizures (FS), 1 had febrile seizures plus (FS+), and 3 had febrile seizures with focal seizures. High-throughput sequencing revealed that the proband has carried a heterozygous missense variant of c.4522T>A (p.Tyr1508Asn) of the SCN1A gene. Sanger sequencing confirmed that other five patients and one normal member from the pedigree have also carried the same variant, which yielded a penetrance of 85.7%.
CONCLUSION
The c.4522T>A (p.Tyr1508Asn) of the SCN1A gene probably underlay the disease in this pedigree. The pattern of inheritance was consistent with autosomal dominant inheritance with incomplete penetrance. Above finding has enriched the variant spectrum of the SCN1A gene.
Epilepsy/genetics*
;
Humans
;
NAV1.1 Voltage-Gated Sodium Channel/genetics*
;
Pedigree
;
Phenotype
;
Seizures, Febrile/genetics*
5.Progress in molecular genetics of epilepsy.
Chinese Journal of Medical Genetics 2002;19(6):505-507
Epilepsy is a group of disorders characterized by recurrent seizures. The etiologies of idiopathic epilepsy commonly have a genetic basis. Gene mutations causing several of the inherited epilepsies have been mapped. In this review, the authors summarize the available information on the genetic basis of human epilepsies and epilepsy syndromes, emphasizing how genetic defects may correlate with the pathophysiological mechanisms of brain hyperexcitability and gene defects can lead to epilepsy by altering multiple and diverse aspects of neuronal function.
Epilepsy
;
genetics
;
Humans
;
KCNQ2 Potassium Channel
;
Mutation
;
NAV1.1 Voltage-Gated Sodium Channel
;
Nerve Tissue Proteins
;
genetics
;
Potassium Channels
;
genetics
;
Potassium Channels, Voltage-Gated
;
Receptors, Nicotinic
;
genetics
;
Research
;
trends
;
Research Design
;
Sodium Channels
;
genetics
;
Voltage-Gated Sodium Channel beta-1 Subunit
6.Advances in the studies on the molecular and genetic aspects of epilepsy.
Xu WANG ; Tao WANG ; Ming-xiong YUAN ; Mu-gen LIU ; Qing WANG
Acta Academiae Medicinae Sinicae 2005;27(3):388-393
Epilepsy is one of the most common and debilitating neurological diseases that affects more than 40 million people worldwide. Genetic factors contribute to the pathogenesis of epilepsy. Molecular genetic studies have identified 15 disease-causing genes for epilepsy. The majority of the genes encode ion channels, including voltage-gated potassium channels KCNQ2 and KCNQ3, sodium channels SCN1A, SCN2A, and SCN1B, chloride channels CLCN2, and ligand-gated ion channels CHRNA4, CHRNB2, GABRG2, and GABRA1. Interestingly, non-ion channel genes have also been identified as epilepsy genes, and these genes include G-protein-coupled receptor MASS1/VLGR1, GM3 synthase, and proteins with unknown functions such as LGI1, NHLRC1, and EFHC1. These studies make genetic testing possible in some patients, and further characterization of the identified epilepsy genes may lead to the development of new drugs and new treatments for patients with epilepsy.
Chloride Channels
;
genetics
;
Epilepsies, Myoclonic
;
genetics
;
Epilepsy
;
genetics
;
Epilepsy, Absence
;
genetics
;
Humans
;
KCNQ2 Potassium Channel
;
genetics
;
KCNQ3 Potassium Channel
;
genetics
;
NAV1.1 Voltage-Gated Sodium Channel
;
NAV1.2 Voltage-Gated Sodium Channel
;
Nerve Tissue Proteins
;
genetics
;
Sodium Channels
;
genetics
7.Analysis of SCN1A gene variants among patients with Dravet syndrome.
Chinese Journal of Medical Genetics 2021;38(2):158-161
OBJECTIVE:
To analyze the clinical features and genetic variants in two patients with Dravet syndrome (DS).
METHODS:
Peripheral blood samples of the children and their parents were collected for the extraction of genomic DNA and high-throughput sequencing. Suspected variants were confirmed by Sanger sequencing.
RESULTS:
By high-throughput sequencing, the two children were found to respectively harbor a c.2135delC frameshifting variant in exon 12 and a c.1522G>T nonsense variant in exon 10 of the SCN1A gene. Both variants were predicted to be pathogenic by bioinformatic analysis. Based on the American College of Medical Genetics and Genomics standards and guidelines, the c.2135delC and c.1522G>A variants of the SCN1A gene were predicted to be pathogenic (PVS1+ PS2+ PM2+ PP3).
CONCLUSION
The variants of the SCN1A gene probably underlay the DS in the patients. Above finding has enriched the variant spectrum and enabled genetic counseling for their families.
Epilepsies, Myoclonic/genetics*
;
Genomics
;
Humans
;
Infant
;
Mutation
;
NAV1.1 Voltage-Gated Sodium Channel/genetics*
;
Pedigree
;
Spasms, Infantile/genetics*
9.Expression and function of voltage-gated Na+ channel isoforms in rat sinoatrial node.
Xin HUANG ; Ai-Qun MA ; Pei YANG ; Yuan DU ; Yu-Tao XI ; Tao GENG
Journal of Southern Medical University 2007;27(1):52-55
OBJECTIVETo detect the expression of voltage-gated Na(+) channel (NaCh) isoforms in rat sinoatrial node and explore their functions.
METHODSExpressions of NaCh isoforms Nav1.1, Nav1.2, Nav1.3, Nav1.5, Nav1.6 and Nav1.7 in the rat sinoatrial node were detected by immunohistochemistry. The functional roles of the NaChs were tested by observing the effect of tetrodotoxin, a specific blocker of NaChs, on the intrinsic heart rate of isolated rat working heart.
RESULTSThe tetrodotoxin- sensitive neuronal isoforms Nav1.1, Nav1.6 and Nav1.7 as well as the tetrodotoxin-resistant cardiac isoform Nav1.5 were present in the rat sinoatrial node, and the neuronal isoforms were more abundant than Nav1.5 (P<0.05). The selective blockade of tetrodotoxin-sensitive isoforms (presumably Nav1.1, Nav1.6 and Nav1.7) by 100 nmol/L tetrodotoxin scarcely affected the intrinsic heart rate (0.5-/+2.9%, P>0.05) while blockade of tetrodotoxin-resistant isoform (presumably Nav1.5) by 2 micromol/L tetrodotoxin resulted in an obvious decline in the intrinsic heart rate (22.1-/+2.1%, P<0.001).
CONCLUSIONSNav1.1, Nav1.5, Nav1.6 and Nav1.7 are all present in rat sinoatrial node. Although neuronal isoforms are more abundant, Nav1.5 seems to contribute more to activity of the sinoatrial node.
Animals ; Heart Rate ; drug effects ; physiology ; Immunohistochemistry ; Ion Channel Gating ; drug effects ; physiology ; Male ; NAV1.1 Voltage-Gated Sodium Channel ; NAV1.5 Voltage-Gated Sodium Channel ; NAV1.6 Voltage-Gated Sodium Channel ; Nerve Tissue Proteins ; biosynthesis ; Protein Isoforms ; biosynthesis ; Rats ; Sinoatrial Node ; drug effects ; metabolism ; physiology ; Sodium Channels ; biosynthesis ; Tetrodotoxin ; pharmacology
10.Analysis of SCN1A deletions or duplications in patients with Dravet syndrome.
Qi ZENG ; Yuehua ZHANG ; Xiaoling YANG ; Xiaojing XU ; Jing ZHANG ; Xiaojuan TIAN ; Aijie LIU ; Xiaoyan LIU ; Yuwu JIANG ; Xiru WU
Chinese Journal of Medical Genetics 2017;34(6):787-791
OBJECTIVETo determine the type and frequency of SCN1A deletions and duplications among patients with Dravet syndrome (DS).
METHODSFor DS patients in which no mutations of the SCN1A gene were detected by PCR-DNA sequencing, SCN1A deletions and duplications were detected by multiplex ligation-dependent probe amplification (MLPA).
RESULTSIn 680 DS patients, 489 had SCN1A mutations identified by PCR-DNA sequencing. In 191 patients who were negative for the SCN1A PCR-DNA sequencing, 15 (15/191, 7.9%) were detected with heterozygous SCN1A deletions or duplications, which included 14 (14/15, 93.3%) SCN1A deletions and 1 SCN1A duplication. There were 13 types of mutations, including whole SCN1A deletions in 3 patients, partial SCN1A deletions in 11 patients and partial SCN1A duplications in one patient. By testing the parents, 14 mutations were found to be de novo. For the remaining case, no SCN1A deletion or duplication was found in the mother, while the father was not available.
CONCLUSIONApproximately 8% of Chinese patients who were negative for SCN1A mutation by PCR-sequencing have SCN1A deletions or duplications. The MLPA analysis should be considered as an important strategy for such patients. SCN1A deletions are more common than SCN1A duplications among DS patients, and the most common types are whole SCN1A deletions. The majority of SCN1A deletions or duplications are de novo.
Epilepsies, Myoclonic ; genetics ; Female ; Gene Deletion ; Gene Duplication ; Humans ; Infant ; Male ; Multiplex Polymerase Chain Reaction ; NAV1.1 Voltage-Gated Sodium Channel ; genetics