1.Image Feature Extraction and Discriminant Analysis of Xinjiang Uygur Medicine Based on Color Histogram.
Murat HAMIT ; Weikang YUN ; Chuanbo YAN ; Abdugheni KUTLUK ; Yang FANG ; Elzat ALIP
Journal of Biomedical Engineering 2015;32(3):588-593
Image feature extraction is an important part of image processing and it is an important field of research and application of image processing technology. Uygur medicine is one of Chinese traditional medicine and researchers pay more attention to it. But large amounts of Uygur medicine data have not been fully utilized. In this study, we extracted the image color histogram feature of herbal and zooid medicine of Xinjiang Uygur. First, we did preprocessing, including image color enhancement, size normalizition and color space transformation. Then we extracted color histogram feature and analyzed them with statistical method. And finally, we evaluated the classification ability of features by Bayes discriminant analysis. Experimental results showed that high accuracy for Uygur medicine image classification was obtained by using color histogram feature. This study would have a certain help for the content-based medical image retrieval for Xinjiang Uygur medicine.
Bayes Theorem
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Color
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Discriminant Analysis
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Drugs, Chinese Herbal
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analysis
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Medicine, Chinese Traditional
2.Xinjiang Uygur Medicine Image Feature Extraction and Discriminant Analysis Based on Color and Textural Features
Weikang YUN ; Hamit MURAT ; Chuanbo YAN ; Kutluk ABDUGHENI ; Matmusa ASAT ; Juan YAO ; Fang YANG ; Alip ELZAT
Chinese Journal of Information on Traditional Chinese Medicine 2016;(1):78-81
Objective To extract Xinjiang Uyghur medicine image features and analyze the features; To investigate the image classification effect of the researched features; To find the suitable features for Xinjiang Uyghur medicine image classification; To lay the foundation for content-based medical image retrieval system of Xinjiang Uyghur medicine images.Methods The flowers and leaves of Xinjiang Uyghur medicine were treated as the research objects. First, images were under preprocessing. Then color and textural features were extracted as original features and statistics method was used to analyze the features. Maximum classification distance was used to analyze the main features obtained from image classification. At last, the classification ability of features was evaluated by Bayes discriminant analysis.Results Color and textural features were selected and classified. The correct classification rate of flower images was 85% and the correct classification rate of leaf images was 62%. The classification effect of flower images used by selected features was better than classification effect of original feature.Conclusion Compared with the classification of original features, the classification accuracy of flower medicine is higher through selected features. This research can lay a certain foundation for the further researches on Xinjiang Uyghur medicine images and the improvement of feature extraction methods.
3.A method of iris image quality evaluation.
Hamit MURAT ; Dawei MAO ; Qinye TONG
Journal of Biomedical Engineering 2006;23(2):275-278
Iris image quality evaluation plays a very important part in iris computer recognition. An iris image quality evaluation method was introduced into this study to distinguish good image from bad image caused by pupil distortion, blurred boundary, two circles appearing not concentric, and severe occlusion by eyelids and eyelashes. The tests based on this method gave good results.
Humans
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Image Enhancement
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methods
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Image Interpretation, Computer-Assisted
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Iris
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anatomy & histology
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Pattern Recognition, Automated
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methods
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Photogrammetry
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methods
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standards
4.Studying psychology test EEG based on information transmission of cerebral cortex.
Dawei MAO ; Hamit MURAT ; Qinye TONG
Journal of Biomedical Engineering 2005;22(6):1157-1160
23 subjects' 8-lead (Fp1, Fp2, Cp3, Cp4, T7, T8, P7, P8) electroencephalogram (EEG) was recorded when they were doing mental arithmetic at four different levels. We calculated the information transmission time series in human cerebral cortex basing on EEG, and the Lempel-Ziv complexity and C1C2 complexity of these time series. When 20 subjects were doing the most difficult mental arithmetic, the information transmission series between lead at left-brain (Cp3, T7, P7) and other leads was of more complexity than others; a light "cross" could be seen after the information transmission matrix was converted to image; when complexity was calculated, the difference was more significant by use of C1 complexity than by other complexity measures.
Cerebral Cortex
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physiology
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Electroencephalography
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Humans
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Intelligence Tests
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Signal Processing, Computer-Assisted
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Synaptic Transmission
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physiology
5.Concomitant Double Tumors of Myxopapillary Ependymoma Presented at Cauda Equina-Filum Terminale in Adult Patient.
Ulaş YENER ; Mustafa GÜDÜK ; Murat Sakir EKŞI ; Murat Hamit AYTAR ; Aydın SAV ; Serdar ÖZGEN
Korean Journal of Spine 2016;13(1):33-36
A 32-year-old man presented with gradually increasing bilateral buttock pain. He had intermittent claudication. Multiple, homogenously enhanced intradural extramedullary lesions at L2-L3 and L5-S1 levels were observed on magnetic resonance imaging. The tumors were debulked and were removed in piecemeal pattern until they had completely been resected. Histopathological examination of the surgical specimens confirmed that both tumors were myxopapillary ependymomas (MPE). MPE presenting as concomitant double tumor at conus-cauda-filum level are very rare. This kind of presentation could not be directly considered as dissemination, since both tumors were in the site of classical origin of MPE. Ten cases of double spinal MPEs have been reported to date. Including the present case, analysis of the 11 patients revealed some facts. There is a male predominance, which is opposite to the ependymomas that are commonly observed in females. Median age at presentation is 15 years. Most pronounced symptom is low back pain that sometimes radiates to lower extremities. Surgical approach was aimed in all tumors, which could be succeeded in all tumors except one. Adjuvant radiation therapy was applied in 5 patients. No recurrences have been reported after surgery or surgery + radiotherapy regimens.
Adult*
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Buttocks
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Ependymoma*
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Female
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Humans
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Intermittent Claudication
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Low Back Pain
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Lower Extremity
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Magnetic Resonance Imaging
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Male
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Radiotherapy
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Recurrence
6.Comparison of the Effects of 13-cis Retinoic Acid and Melatonin on the Viabilities of SH-SY5Y Neuroblastoma Cell Line.
Murat TOSUN ; Yasemin SOYSAL ; Nuket Gocmen MAS ; Hamit Selim KARABEKIR
Journal of Korean Neurosurgical Society 2015;57(3):147-151
OBJECTIVE: Neuroblastoma is one of common childhood tumors. Although its mortality is very high, there is no effective treatment yet. The aim of this project is to evaluate cytotoxic effects of melatonin (MLT) an endogen hormone and 13-cis retinoic acid (13-cis-RA) also named as isotretinoin an analogue of vitamin A on neuroblastoma SH-SY5Y cell line. METHODS: In this study, SH-SY5Y cell line was used. After cell culture, the cells were exposed to different doses of MLT and 13-cis-RA. 24 and 48 hours later. While the viabilities was estimated with MTT cell viability assay test, apoptotic indexes were calculated after staining with TUNEL based apoptosis kit. RESULTS: It was observed that MLT has very effective cytotoxic potential than 13-cis-RA on neuroblastoma cell line. At the same time, when MLT and 13-cis-RA were combined, this effect was potentiated. On the other hand, it was found that the effect of 13-cis-RA individually on neuroblastoma cells was very slight. CONCLUSION: We suggest that in the treatment of patient with neuroblastoma, MLT is very effective and also this effect can be augmented by combination with 13-cis-RA.
Apoptosis
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Cell Culture Techniques
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Cell Line*
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Cell Survival
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Hand
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Humans
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In Situ Nick-End Labeling
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Isotretinoin
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Melatonin*
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Mortality
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Neuroblastoma*
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Tretinoin*
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Vitamin A
7.Usefulness of End-to-Side Bridging Anastomosis of Sural Nerve to Tibial Nerve: An Experimental Research.
Soner CIVI ; Emre DURDAG ; Murat Hamit AYTAR ; Ozgur KARDES ; Figen KAYMAZ ; Sukru AYKOL
Journal of Korean Neurosurgical Society 2017;60(4):417-423
OBJECTIVE: Repair of sensorial nerve defect is an important issue on peripheric nerve surgery. The aim of the present study was to determine the effects of sensory-motor nerve bridging on the denervated dermatomal area, in rats with sensory nerve defects, using a neural cell adhesion molecule (NCAM). METHODS: We compared the efficacy of end-to-side (ETS) coaptation of the tibial nerve for sural nerve defect repair, in 32 Sprague-Dawley rats. Rats were assigned to 1 of 4 groups: group A was the sham operated group, group B rats had sural nerves sectioned and buried in neighboring muscles, group C experienced nerve sectioning and end-to-end (ETE) anastomosis, and group D had sural nerves sectioned and ETS anastomosis was performed using atibial nerve bridge. Neurological evaluation included the skin pinch test and histological evaluation was performed by assessing NCAM expression in nerve terminals. RESULTS: Rats in the denervated group yielded negative results for the skin pinch tests, while animals in the surgical intervention groups (group C and D) demonstrated positive results. As predicted, there were no positively stained skin specimens in the denervated group (group B); however, the surgery groups demonstrated significant staining. NCAM expression was also significantly higher in the surgery groups. However, the mean NCAM values were not significantly different between group C and group D. CONCLUSION: Previous research indicates that ETE nerve repair is the gold standard for peripheral nerve defect repair. However, ETS repair is an effective alternative method in cases of sensorial nerve defect when ETE repair is not possible.
Animals
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Methods
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Muscles
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Neural Cell Adhesion Molecules
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Peripheral Nerves
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Rats
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Rats, Sprague-Dawley
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Skin
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Sural Nerve*
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Tibial Nerve*
8.Speaker identification based on Mel frequency cepstrum coefficient and complexity measure.
Dawei MAO ; Hua CAO ; Hamit MURAT ; Qinye TONG
Journal of Biomedical Engineering 2006;23(4):882-886
In present, the most basically used parameters for speaker identification are linear predictive coding (LPC) parameter, Mel frequency cepstrum coefficient(MFCC), etc. First in this paper only MFCC was used as the parameter and then Lempel-Ziv Complexity was combined with MFCC as parameters. The text-dependent recognition rate of 50 speakers increased from 42% to 80% and the text-independent recognition rate of 50 speakers increased from 60% to 72%. This test shows that Lempel-Ziv complexity, as a new parameter, can be applied to speaker identification.
Algorithms
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Artificial Intelligence
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Female
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Humans
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Male
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Nonlinear Dynamics
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Pattern Recognition, Automated
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methods
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Signal Processing, Computer-Assisted
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Voice
9.The comparison of algorithms on the CT image retrieval of Xinjiang local liver hydatid disease.
Chuanbo YAN ; Murat HAMIT ; Li LI ; Jianjun CHEN ; Yahting HU ; Dewei KONG ; Jingjing ZHOU
Journal of Biomedical Engineering 2013;30(5):942-945
Xinjiang local liver hydatid disease is an infectious parasitic disease in Xinjiang pastoral areas. Based on the image features, selecting the appropriate distance algorithms to retrieve the image quickly and accurately, different distance algorithms have been induced in this area, which can greatly assist the doctors to early detect, diagnose and cure the liver hydatid disease. This paper compared the performance of different distance algorithms to retrieve the image when using the liver hydatid disease medical image texture features. The results showed that: for the liver hydatid disease medical images retrieval based on gray level cocurrence matrix (GLCM) texture features, the Mahalanobis distance algorithm is superior to other distance algorithms.
Algorithms
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China
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Databases, Factual
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Echinococcosis, Hepatic
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diagnostic imaging
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Humans
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Image Processing, Computer-Assisted
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methods
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Information Storage and Retrieval
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methods
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Tomography, X-Ray Computed
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methods