1.Advances in the study of mitophagy-related receptor proteins.
Rang-Gui MA ; Zhi XIA ; Hua-Yu SHANG
Acta Physiologica Sinica 2021;73(6):1025-1034
Cells selectively scavenge redundant or damaged mitochondria by mitophagy, which is an important mechanism of mitochondrial quality control. Recent studies have shown that mitophagy is mainly regulated by autophagy-related genes (Atgs) in yeast cells, while mitochondrial membrane associated proteins such as PTEN-induced putative kinase 1 (PINK1), NIX/BNIP3L, BNIP3, FUN14 domain containing 1 (FUNDC1), FKBP8/FKBP38, Bcl-2-like protein 13 (Bcl2L13), nucleotide binding domain and leucine-rich-repeat-containing proteins X1 (NLRX1), prohibitin 2 (PHB2) and lipids such as cardiolipin (CL) are the key mitophagic receptors in mammalian cells, which can selectively recognize damaged mitochondria, recruit them into isolation membranes by binding to microtubule-associated protein 1 light chain 3 (LC3) or γ-aminobutyric acid receptor-associated protein (GABARAP), and then fuse with lysosomes to eliminate the trapped mitochondria. This article reviews recent research progress of mitophagy-related receptor proteins.
Animals
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Apoptosis Regulatory Proteins
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Autophagy
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Microtubule-Associated Proteins
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Mitochondria
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Mitochondrial Proteins/genetics*
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Mitophagy
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Prohibitins
2.Genetic testing and prenatal diagnosis for a Chinese pedigree affected with mitochondrial DNA depletion syndrome due to variant of MPV17 gene.
Ganye ZHAO ; Xiaoyan ZHAO ; Xuechao ZHAO ; Li'na LIU ; Conghui WANG ; Xiangdong KONG
Chinese Journal of Medical Genetics 2022;39(10):1085-1088
OBJECTIVE:
To explore the genetic etiology of a Chinese pedigree affected with infantile hepatitis syndrome.
METHODS:
Genes associated with liver diseases subjected to high-throughput sequencing. Candidate variants were validated by Sanger sequencing of the proband and his parents. The pathogenicity of the variants was analyzed through bioinformatic analysis.
RESULTS:
High-throughput sequencing revealed that the proband has harbored c.182T>C (p.F61S) and c.293C>T (p.P98L) variants of the MPV17 gene, which were verified by Sanger sequencing to be inherited from his parents. The variant c.182T>C (p.F61S) was unreported previously and predicted to be likely pathogenic by bioinformatic analysis.
CONCLUSION
The proband was caused by the compound heterozygous variations of MPV17 gene including c.182T>C (p.F61S) and c.293C>T (p.P98L). Discovery of the novel variant has enriched the spectrum of pathogenic variants of the MPV17 gene.
China
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DNA, Mitochondrial/genetics*
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Female
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Genetic Testing
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Humans
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Membrane Proteins/genetics*
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Metabolism, Inborn Errors/genetics*
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Mitochondrial Proteins/genetics*
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Mutation
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Pedigree
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Pregnancy
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Prenatal Diagnosis
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Syndrome
3.A Case of Diphyllobothrium nihonkaiense Infection as Confirmed by Mitochondrial COX1 Gene Sequence Analysis.
Sang Hyun PARK ; Keeseon S EOM ; Min Sun PARK ; Oh Kyoung KWON ; Hyo Sun KIM ; Jai Hoon YOON
The Korean Journal of Parasitology 2013;51(4):471-473
Diphyllobothrium nihonkaiense has been reported in Korea as Diphyllobothrium latum because of their close morphologic resemblance. We have identified a human case of D. nihonkaiense infection using the mitochondrial cytochrome c oxidase subunit I (cox1) gene sequence analysis. On 18 February 2012, a patient who had consumed raw fish a month earlier visited our outpatient clinic with a long tapeworm parasite excreted in the feces. The body of the segmented worm was 2 m long and divided into the scolex (head) and proglottids. It was morphologically close to D. nihonkaiense and D. latum. The cox1 gene analysis showed 99.4% (340/342 bp) homology with D. nihonkaiense but only 91.8% (314/342 bp) homology with D. latum. The present study suggested that the Diphyllobothrium spp. infection in Korea should be analyzed with specific DNA sequence for an accurate species identification.
Animals
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Cyclooxygenase 1/*genetics
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Diphyllobothriasis/*parasitology
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Diphyllobothrium/enzymology/genetics/*isolation & purification
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Female
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Helminth Proteins/*genetics
;
Humans
;
Mitochondrial Proteins/*genetics
4.Progresses and perspectives in the study on citrin deficiency.
Yao-bang LU ; Fei PENG ; Meng-xian LI ; Keiko KOBAYASHI ; Takeyori SAHEKI
Chinese Journal of Medical Genetics 2006;23(6):655-658
Citrin deficiency causes autosomal recessive disorders including adult-onset type II citrullinemia (CTLN2) and neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD). The responsive gene of citrin deficiency, SLC25A13, locates on chromosome 7q21.3 and encodes citrin as a liver-type mitochondrial aspartate/glutamate carrier (AGC). The mutations on SLC25A13 will result in deficiency of citrin and CTLN2 or NICCD. Citrin deficiency was found at first in Japan. However, recently, some of cases were identified in China, Korea, Vietnam, Israel, Czech, United States and England, and racial differences of the SLC25A13 mutations were found, suggesting the patients with citrin deficiency maybe exist worldwide. In this article, authors reviewed the progresses in the study on citrin deficiency up to now and put forward authors' considerations for further research on it.
Animals
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Calcium-Binding Proteins
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deficiency
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genetics
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Cholestasis, Intrahepatic
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genetics
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surgery
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Chromosomes, Human, Pair 7
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Citrullinemia
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etiology
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genetics
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surgery
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Humans
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Liver Transplantation
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Membrane Transport Proteins
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genetics
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Mitochondrial Membrane Transport Proteins
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Mitochondrial Proteins
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genetics
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Organic Anion Transporters
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deficiency
;
genetics
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Point Mutation
5.Prokaryotic expression and purification of mitochondrial transcription complex proteins.
Guang LIU ; Rui-Feng YANG ; Bing-Yang SHI ; De-Pei LIU
Acta Academiae Medicinae Sinicae 2011;33(6):638-643
OBJECTIVETo obtain human mitochondrial transcription factor A (TFAM), mitochondrial transcription factor B1 (TFB1M), and mitochondrial transcription factor B2 (TFB2M) that were expressed efficiently in E. coli BE21 and to purify the target proteins.
METHODSTFAM, TFB1M, and TFB2M segments were designed and synthesized. After having been sequenced, the reconstructed expression vectors were constructed by enzyme digestion and by cloning into an expression vector pET42a. Then the reconstructed vectors were transformed into E. coli BL21. Recombinant glutathione S transferase (GST) fusion proteins were expressed via the induction of IsoPropyl beta-D-ThioGalactoside (IPTG) and purified by glutathione Sepharose 4B.
RESULTSThe expression plasmids of pET42a-TFAM, pET42a-TFB1M, and pET42a-TFB1M were successfully constructed. The sequences of the cloned gene segments were identical with GenBank reported. The protein bands with relative molecular masses of 56 000, 67 000, and 69 000 appeared on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) after the expressed GST-TFAM, GST-TFB1M, and GST-TFB2M fusion proteins were separated by SDS-PAGE. The expressed fusion proteins were purified to high purity.
CONCLUSIONThe recombinant plasmids pET42a-TFAM, pET42a-TFB1M, and pET42a-TFB2M were successfully constructed, and the GST-fused target proteins were prepared.
Cloning, Molecular ; DNA-Binding Proteins ; genetics ; Escherichia coli ; genetics ; Genetic Vectors ; Humans ; Methyltransferases ; genetics ; Mitochondrial Proteins ; genetics ; Recombinant Fusion Proteins ; genetics ; Transcription Factors ; genetics
6.Flow cytometric analysis for detecting mitochondrial permeability transition pore opening.
Fang YAN ; Xiao-dong MA ; Xue-mei TIAN
Journal of Southern Medical University 2010;30(9):2097-2099
OBJECTIVETo introduce a new method for detecting mitochondrial permeability transition pore (PTP) opening with flow cytometry using the resveratrol-inducing PTP opening model.
METHODSMitochondria were isolated from rat livers and selectively labeled with nonyl acridine orange. The mitochondrial membrane potential was detected using flow cytometry with TMRE (tetramethylrhodamine, ethyl ester) labeling. PTP opening induced by resveratrol was represented by the changes of mitochondrial side-scattering (SSC) detected by flow cytometry.
RESULTSFlow cytometry was capable of defining the purity of the mitochondria isolated. The fluorescence intensities and SSC of the mitochondria were decreased after resveratrol treatment, indicating that resveratrol could induce PTP opening. Ciclosporin A inhibited resveratrol-induced PTP opening.
CONCLUSIONFlow cytometric analysis allows accurate and convenient detection of mitochondrial membrane potential, mitochondrial swelling and PTP opening.
Animals ; Apoptosis ; Flow Cytometry ; Membrane Potential, Mitochondrial ; genetics ; Mitochondria, Liver ; metabolism ; Mitochondrial Membrane Transport Proteins ; metabolism ; Rats ; Rhodamines
7.Genetic analysis of a child with combined oxidative phosphorylation deficiency 14 due to variant of FARS2 gene.
Jian MA ; Hongwei ZHANG ; Yuqiang LYU ; Min GAO ; Dong WANG ; Zhongtao GAI ; Yi LIU
Chinese Journal of Medical Genetics 2022;39(12):1393-1397
OBJECTIVE:
To explore the genetic etiology for an infant featuring convulsive status epilepticus, developmental delay and elevated plasma lactate.
METHODS:
Whole exome sequencing and mitochondrial D-loop sequencing were carried out for the infant. Candidate variants were verified by Sanger sequencing. Previously reported FARS2 gene variants were searched from the PubMed, Wanfang and CNKI databases.
RESULTS:
The infant was found to harbor compound heterozygous variants of the FARS2 gene, namely c.925G>A (p.G309S) and c.405C>A (p.H135Q), which were inherited from its mother and father, respectively. The former has been recorded by the HGMD as a pathogenic variant, whilst the latter was predicted to be likely pathogenic based on the guidelines of the American College of Medical Genetics and Genomics. A total of 30 COXPD14 cases were retrieved from the literature, with common mutations including missense variants, in-frame deletions, splice-site variants and large deletions.
CONCLUSION
The common manifestations of COXPD14 have included developmental delay (96%), status epilepticus (97%) and increased lactic acid (96%). The compound heterozygous variants of the FARS2 gene probably underlay the disorder in this child.
Female
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Humans
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Infant
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Genetic Testing
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Mitochondrial Diseases
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Mitochondrial Proteins/genetics*
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Phenylalanine-tRNA Ligase
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Status Epilepticus
;
Exome Sequencing
8.Mutation of mitochondrial DNA in breast carcinoma.
Chinese Journal of Pathology 2006;35(10):625-627
9.miR-27 regulates mitochondrial networks by directly targeting the mitochondrial fission factor.
Hyosun TAK ; Jihye KIM ; Aravinth Kumar JAYABALAN ; Heejin LEE ; Hoin KANG ; Dong Hyung CHO ; Takbum OHN ; Suk Woo NAM ; Wook KIM ; Eun Kyung LEE
Experimental & Molecular Medicine 2014;46(11):e123-
Mitochondrial morphology is dynamically regulated by forming small, fragmented units or interconnected networks, and this is a pivotal process that is used to maintain mitochondrial homeostasis. Although dysregulation of mitochondrial dynamics is related to the pathogenesis of several human diseases, its molecular mechanism is not fully elucidated. In this study, we demonstrate the potential role of miR-27 in the regulation of mitochondrial dynamics. Mitochondrial fission factor (MFF) mRNA is a direct target of miR-27, whose ectopic expression decreases MFF expression through binding to its 3'-untranslated region. Expression of miR-27 results in the elongation of mitochondria as well as an increased mitochondrial membrane potential and mitochondrial ATP level. Our results suggest that miR-27 is a novel regulator affecting morphological mitochondrial changes by targeting MFF.
3' Untranslated Regions
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Cell Line
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Gene Expression Regulation
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Humans
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Membrane Potential, Mitochondrial
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Membrane Proteins/*genetics
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MicroRNAs/*metabolism
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Mitochondria/*genetics/*metabolism
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*Mitochondrial Dynamics
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Mitochondrial Proteins/*genetics
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*Protein Biosynthesis
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RNA, Messenger/genetics/metabolism
10.Double Strand Problems: Reverse DNA Sequences Deposited in the DNA Database.
Urusa THAENKHAM ; Yukifumi NAWA
The Korean Journal of Parasitology 2010;48(1):89-90
No abstract available.
Animals
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*Base Sequence
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DNA, Helminth/*genetics
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DNA, Mitochondrial/*genetics
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*Databases, Nucleic Acid
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Electron Transport Complex IV/*genetics
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Helminth Proteins/*genetics