2.Gene expression data classification using consensus independent component analysis.
Chun-Hou ZHENG ; De-Shuang HUANG ; Xiang-Zhen KONG ; Xing-Ming ZHAO
Genomics, Proteomics & Bioinformatics 2008;6(2):74-82
We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible.
Artificial Intelligence
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Colonic Neoplasms
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classification
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genetics
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Computational Biology
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Data Interpretation, Statistical
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Databases, Genetic
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Discriminant Analysis
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Gene Expression Profiling
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statistics & numerical data
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Glioma
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classification
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genetics
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Humans
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Leukemia
;
classification
;
genetics
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Models, Statistical
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Neoplasms
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classification
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genetics
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Oligonucleotide Array Sequence Analysis
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statistics & numerical data
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Principal Component Analysis
3.Preparation of alpha-toxin's protective antigen of clostridium perfringens type A and research for its primary immunological protective function.
Ming-Hui LIN ; Jun YIN ; Hong-Guang XING ; Xiao-Jun HOU ; Hui WANG ; Wei SONG
Chinese Journal of Biotechnology 2004;20(1):63-65
Induced by 42 degrees C, the recombinant engineering bacterial pBV/cpa408 was highly expressed. After having been pelleted by 80% (NH4)2 SO4 and dialysised, the expressed protein was isolated and purified by the gel filtration choromatography. Then according to an amount of 1.0 mg/kg, the Kunming Mice (body weighted 18g) were immuned with the purified protein by intraperitoneal inoculation. One week after the first enhanced immunization, the Kunming Mice were attacked with an amount of 1.0MLD alpha-toxin, in which the eight mice immuned all survive and the control group all died. During the period of immunization, the titre of the mouse's serum antibody was measured by ELISA. One week after the first immunization, the titre of the mice's serum antibody was 1:800, but that of one week after the first enhanced immunization reached to 1:6400.
Animals
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Antibodies, Bacterial
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blood
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Antigens, Bacterial
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biosynthesis
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immunology
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Bacterial Toxins
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immunology
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Calcium-Binding Proteins
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immunology
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Female
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Immunization
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Male
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Mice
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Recombinant Proteins
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biosynthesis
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immunology
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isolation & purification
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Type C Phospholipases
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immunology
4.Implication of elevated expression of receptor for activated C kinase 1 in mononuclear cells and coronary atherosclerotic plaques from patients with coronary artery disease
Hong-Yan DAI ; Ming-Qing XING ; Jun GUAN ; Liang GUO ; Fang-Jie HOU
Chinese Journal of Cardiology 2013;41(1):23-27
Objective To observe the expression and clinical implication of receptor for activated C kinase 1 (RACK1) in mononuclear cells and coronary atherosclerotic plaques from patients with coronary artery disease.Methods mRNA and protein expressions of RACK1 were detected in mononuclear cells from 29 patients with stable angina pectoris (SAP),41 patients with acute coronary syndrome(ACS) and 30 healthy volunteers.RACK1 protein expression was also detected by immunohistochemistry in 17 coronary atherosclerotic plaques and 6 normal autopsy coronary samples.Results (1) mRNA expression of RACK1 was significantly upregulated in mononuclear cells from patients with ACS compared with those from patients with SAP (18.71 ± 5.45 vs.12.18 ± 4.14,P < 0.05),and the latter was also significantly higher than in healthy controls (12.18 ± 4.14 vs.3.65 ± 1.57,P < 0.05).(2) Similar changes were observed for protein expression of RACK1 for the three groups.(3) Increased expression of RACK1 was found in atherosclerotic plaques,especially in unstable plaques,positive RACK1 stain was evidenced in foam cells,inflammatory cells,smooth muscle cells and endothelial cells.Conclusions The expression of RACK1 is significantly upregulated in mononuclear cells from patients with coronary artery disease,especially in patients with ACS,and in coronary atherosclerotic plaques,especially in unstable plaques.Our results thus suggest that RACK1 might play an important role in the development and progression of coronary artery disease.
5.Genotype polymorphism and its implications of mannose-binding protein allele in 5 Chinese nationalities
Hong SHI ; Fusheng WANG ; Lei JIN ; Mingxu LIU ; Weiguo HONG ; Qingyou DU ; Zhouyun LEI ; Jing HOU ; Ming SHI ; Lihe XING
Chinese Journal of Medical Genetics 2001;18(3):202-205
Objective To detect the genotypes and sequences of the exon 1 of human mannose-binding protein (MBP) allele in 5 Chinese nationalities. Methods The genotypes of MBP gene of 5 Chinese nationalities were detected by polymerase chain reaction-restriction fragment length polymorphism(PCR-RFLP). The exon 1 of the MBP gene of 22 Chinese Hans was analyzed by using ABI 310 genetic analyzer. Results The DNA sequences of exon 1 of Chinese MBP gene were acquired. The allele frequencies of the codon 54 of the MBP gene (MBP-54) of 5 Chinese nationalities were 0.181(Hans), 0.128(Uygurs), 0.181(Mongols), 0.179(Tibetans) and 0.181(Yis). The allele distribution for MBP-54 mutation of 5 Chinese nationalities was in good agreement with Hardy-Weinberg equilibrium. Compared with the Hans, Uygurs had a lower MBP-54 mutation rate. There were no differences in the allele frequencies between the chronic hepatitis B patients and health controls in Chinese Hans. The mutations of the codons 52 and 57 were not detected in this study. Conclusion A higher prevalence of MBP-54 mutation was found in 5 Chinese nationalities, MBP-54 mutation was not associated with the persistence of hepatitis B.
6.Resources and application of She's nationality wild medicinal plants.
Hou-Xing LEI ; Jian-Liang LI ; Song-Ming ZHENG ; Li-Hua FAN ; Shui-Fu LI ; Wen-Liang CHENG ; Jin-Wei HUA ; Hua-Li YU ; De-Xiong DAI ; Yuan-Wei XIE
China Journal of Chinese Materia Medica 2014;39(16):3180-3183
To make a thorough investigation of the common She's nationality wild medicinal plants resources in our country, including the species, the distribution, the folk application and the endemic medicinal plant species, Field surveyed was conducted with 25 She people mainly lived area (county, district or city) throughout the country, the folk prescription and treatment cases provided by She's medical personnel, the drug usage and dosage, the commonly used traditional She's medicine and drug samples were collected. And the distribution, growing environment of these plants were investigated, their characteristics, photographs, GPS data and track were record , and the fresh wax leaf or plants specimens were collected. In total 1 600 varieties of folk medicine of She's nationality, 450 disease names and 1 016 prescriptions were collected. 520 kinds of these medicinal plants were commonly used, growing mainly distributed in the southeastern China, about 200 meters above sea level to 1 500 meters. There are 5 First-Grade State protection wild plants (medicinal), 15 second-Grade State protection wild plants (medicinal), and 11 She characteristic medicinal plants in our study, they belong to 144 families, 312 genera 494 species, 2 subspecies, 17 varieties, 3 forms and 1 cultivated varieties of She's nationality. Folk medicine usage is different from the traditional Chinese medicine and ethnic medicine. This survey finds out the common She's nationality wild medicinal plants resources in China, including the species, the distribution, the folk application and commonly used drugs, and found the rare and endangered medicinal plants and the She's nationality endemic medicinal plants, which provides a basis for further development and use the traditional She's medicine resources.
China
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ethnology
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Conservation of Natural Resources
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Drugs, Chinese Herbal
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analysis
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Ethnic Groups
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Humans
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Medicine, Chinese Traditional
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Plants, Medicinal
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chemistry
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classification
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growth & development
7.Effect of human colon carcinoma-associated fibroblasts on biological behavior of colon carcinoma Lovo cells.
Xin-lin WU ; Kai-jin LIN ; Lin SHI ; Xiu-lan SU ; Ming-xing HOU ; Pei-de DONG
Chinese Journal of Gastrointestinal Surgery 2013;16(8):759-763
OBJECTIVETo investigate the effects of human colon carcinoma-associated fibroblasts (CAFs) on proliferation, adhesion, migration and invasion of colon carcinoma Lovo cells.
METHODSThe co-culture models among colon CAFs, NFs and Lovo cell were established by conditioned medium (CM) of human colon CAFs and colon normal fibroblasts (NFs). Lovo cells in the blank control group was treated with serum-free culture medium. The effects of human colon CAFs on proliferation, adhesion, migration and invasion of colon carcinoma Lovo cells were detected by cell proliferation assay, adhesion assay, migration assay and Transwell invasion assay.
RESULTSAfter co-culture with colon CAFs, the absorbance (A) value of Lovo cells was (0.667±0.059) in 48 h and (0.709±0.030) in 72 h. The A value of Lovo cells adhesion to fibronectin was (0.588±0.067). The cell mobility rates were (35.2±8.7)% in 12 h and (64.6±7.1)% in 24 h. The number of invasive cell was (56.2±4.8). All the above parameters were increased compared with those in the blank control group and NFs group (all P<0.01).
CONCLUSIONHuman colon CAFs can promote the proliferation, adhesion, migration and invasion of colon carcinoma Lovo cells.
Cell Adhesion ; Cell Line, Tumor ; Cell Movement ; Cell Proliferation ; Coculture Techniques ; Colonic Neoplasms ; pathology ; Fibroblasts ; cytology ; Humans
8.Clinical values and optimal cut-off points of basic vital signs in early identification of critical hand, foot, and mouth disease.
Xing-Yuan DU ; Ying LI ; Kun DENG ; Shu-Mei WEN ; Ling-Li LAN ; Guo-Zhen HOU ; Bao-Ming ZHANG
Chinese Journal of Contemporary Pediatrics 2015;17(6):602-606
OBJECTIVETo study the clinical values of basic vital signs in early identification of critical hand-foot-mouth disease (HFMD).
METHODSThe clinical data of 358 children with severe HFMD [212 cases in stage 2 (central nervous system involvement) and 146 cases in stage 3 (earlier stage of cardiopulmonary failure, critical type)] were reviewed. The diagnostic values of peak temperature and duration of fever, as well as the heart rate (HR), respiratory rate (RR), systolic blood pressure (SBP), and diastolic blood pressure (DBP) in different age groups, for critical HFMD (stage 3) were analyzed using the receiver operating characteristic (ROC) curve.
RESULTSHFMD might progress to critical type in case of HR≥148.5 beats/minutes, RR≥36.5 times/minutes, SBP≥95 mm Hg, and DBP≥59 mm Hg among children aged 0-1 year. HR≥142.5 times/minutes, RR≥31.5 times/mintes, SBP≥103 mm Hg, and DBP≥60.5 mm Hg in children aged 1-2 years had a certain diagnostic value for critical HFMD. HFMD might progress to critical type in case of HR≥139.5 times/minutes, RR≥29.5 times/minutes, and SBP≥103 mm Hg among children≥3 years of age. The sensitivity and specificity of every indicator were higher than 0.517 and 0.769, respectively. The area under the ROC curve (AUC) for peak temperature was 0.507 (P=0.816, compared with AUC=0.5). When the duration of fever was ≥5.5 days, the sensitivity and specificity were 0.589 and 0.571, respectively.
CONCLUSIONSHR, RR, and BP are good indicators to identify critical HFMD (stage 3) early. The optimal cut-off points conform to the age characteristics of children. DBP in children≥3 years of age, peak temperature, and duration of fever have a low value in early identification of critical HFMD.
Blood Pressure ; Child ; Child, Preschool ; Female ; Hand, Foot and Mouth Disease ; diagnosis ; physiopathology ; Heart Rate ; Humans ; Infant ; Male ; ROC Curve ; Respiration
9.An observation on antioxidant capacity of Keshan disease patients
Yu, WANG ; Jun-rui, PEI ; Xing-zhou, LI ; Lin, GAO ; Li-jia, YAN ; Qi, LI ; Jie, HOU ; Ling-wang, ZHOU ; Li-jun, ZHANG ; Shao-chen, LI ; Ming-fa, LIU ; Tong, WANG
Chinese Journal of Endemiology 2009;28(3):332-334
Objective To explore the relationship between myocardial damage and antioxidant capacity in vivo of Keshan disease patients and to analyze the possible pathogenesis. Methods In the period from 2005 to 2006, 41 chronic and latent Keshan disease cases were chosen as the case group from such serious endemic areas as Yongjin Village, Xinfa Village of Fuyu County, Fuan Village of Shangzhi County, Xinghuo Village of Wudalianchi County, 61 healthy people from the same area as internal controls, 48 healthy people from Xianglansan Village of Wangkui County, an un-endemic area, as external control. Fasting peripheral venous blood was collected from all the people. And blood selenium, glutathione peroxidase(GSH-Px) and suporoxide dismutase.(T-SOD) activities, malondialdehyde (MDA) levels were examined. Results Blood selenium level of the patient group [(34.80±13.30) μg/L], GSH-Px[(104.10±34.19)U/L]and T-SOD[(92.16±17.98)×103 U/L]actives were significantly lower than the internal control group [(41.24±13.57)μg/L, (118.57±25.49)U/L, (104.82±13.56)×103 U/L]and the external control group [(48.33±16.51)μg/L, (155.00±24.01)U/L, (108.48±12.73)×103 U/L], respectively, with a statistically significant difference(all P < 0.05). MDA level of the patient group[(7.12± 1.37)μmol/L]was higher than that in the internal control group[(5.36±1.18)μmol/L]and the external control group[(5.22±0.83)μmol/L]with a statistically significant differences(both P < 0.05). The blood selenium level, GSH-Px activity of internal control group was resoectively lower than that in the external control group, the differences being statistically significant(beth P < 0.05). Conclusions Selenium deficiency may lead to reduced antioxidant capacity and enhanced oxidative damage in Keshan disease patients in vivo. There may be a certain relationship between oxidative stress disorder and myocardial damage of Keshan disease.
10.Contraception status and service demands in patients with repeated artificial abortion in minority nationality
Xia LI ; Xing LIU ; Ming HOU ; Wei YANG
Chinese Journal of Modern Nursing 2016;22(22):3159-3162
Objective To understand the status of repeated abortion, contraception and service demands in women of minority nationality. Methods We investigated 182 out-patients of gynaecology and obstetrics with repeated artificial abortion in minority nationality from a class Ⅲ grade I hospital in Xinjiang Urumqi city with questionnaire by means of general investigation. Results In patients of this group, the incidence of repeated abortion was 47.89% with 2-6 times [average of(2.67±0.92)]. The spacing interval to the previous abortion was 2-12 months [ average of ( 10. 36 ± 6. 68 ) ] . Besides, the rate of implementing contraception measures(36.3%) was low with 76.9% for using condoms. Moreover, most husbands(68.1%) had a positive attitude to contraception. In the respect of service demands, 80.3% of them thought the knowledge on contraception was needed, 90.1% of them thought conduct propaganda was a must, 80.2% of them thought the counseling on contraception was necessary. The approaches of obtaining contraception knowledge ranking in the top three were medical staff(73.6%), publicity materials and books, newspapers, magazines(53.8%), radio and television(28.6%). In addition, there was a statistically significant difference between effective and adopted contraception measures in patients(P<0.05).Conclusions The status of repeated abortion in this area is not optimistic. There is a large difference between cognition and behavior of contraception in patients. Because of this, it offers a new challenge for workers in family planning and professional and technical personnel.