1.Recent advances of studies on microRNA in platelet.
Mao LUO ; Mei-ping REN ; Jian-bo WU
Chinese Journal of Cardiology 2012;40(8):714-717
2.Clinical significance of plasma miR-24 dysregulation in nasopharyngeal carcinoma.
Lu WANG ; Bolong YU ; Jianhua CEN ; Xinyu PENG ; Youli LIU ; Fangfang ZENG ; Xiong LIU
Journal of Southern Medical University 2015;35(5):743-747
OBJECTIVETo examine the expression level of miR-24 in the plasma of nasopharyngeal carcinoma (NPC) patients and investigate the clinical significance of miR-24 in NPC development.
METHODSBlood samples were from 217 NPC patients admitted in our Department between December, 2007 and June, 2011, with those from 73 patients with chronic purulent otitis media or chronic sinusitis as control. The follow-up data of all the patients were reviewed and the expression of miR-24 in the plasma was examined by qRT-PCR. The correlation of miR-24 expression with clinical staging of NPC was analyzed, and miR-24 levels before and after the treatment were compared.
RESULTSCompared with the control group, the NPC patients showed significantly up-regulated level of miR-24 in the plasma (P<0.001). Plasma miR-24 level differed significantly among patients with different T stages (P=0.007) and was negatively correlated with the N stages (P=0.028) and plasma EBV-DNA (P=0.048). The expression levels of miR-24 were significantly reduced after treatment in the NPC patients and were significantly lowered in patients without relapse or metastasis (P=0.001).
CONCLUSIONPlasma miR-24 may serve as a novel molecular biomarker for early diagnosis and prognosis of NPC.
Biomarkers ; blood ; Carcinoma ; Humans ; MicroRNAs ; blood ; Nasopharyngeal Neoplasms ; blood ; Prognosis
4.Clinical value in detection of blood miRNAs in patients with colorectal cancer.
Yan TAN ; Furong LI ; Xiaofang YU
Journal of Central South University(Medical Sciences) 2015;40(11):1276-1280
Colorectal cancer (CRC) is the most common cancer in digestive system, with the highest mortality rate. Its pathogenesis, diagnosis and treatment have been studied extensively. With the deepening of the investigations, more and more studies show that miRNA is closely related with the carcinogenesis, diagnosis and treatment of CRC. The abnormal expression of blood miRNA is expected to become the biomarkers for early diagnosis of CRC and prognostic evaluation, and it may provide a new strategy for clinical treatment.
Biomarkers, Tumor
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blood
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Carcinogenesis
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Colorectal Neoplasms
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blood
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Early Detection of Cancer
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Humans
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MicroRNAs
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blood
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Prognosis
5.Advances in research on circulating nucleic acids as diagnostic markers for cancer.
Rong-rong JING ; Hui-min WANG ; Zhi-wei WANG
Chinese Journal of Oncology 2011;33(12):881-884
Biomarkers, Tumor
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blood
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DNA, Neoplasm
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blood
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Humans
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MicroRNAs
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blood
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Molecular Diagnostic Techniques
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Neoplasms
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blood
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diagnosis
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Nucleic Acids
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blood
6.The expression and clinical implication of plasma miR-328 in patients with atrial fibrillation.
Xi WANG ; Chun-guang QIU ; Zhen-wen HUANG ; Zhan-ying HAN ; Wen-jie LU ; Xiao-jie CHEN
Chinese Journal of Cardiology 2013;41(2):126-129
OBJECTIVETo observe the expression and clinical implication of plasma miR-328 in patients with atrial fibrillation (AF).
METHODSFifty-eight patients with AF (AF group: 17 paroxysmal AF, 21 persistent AF, and 20 permanent AF) and 15 healthy volunteers (Control group) were included. General clinical data and related biochemical parameters were collected. Plasma miR-328 levels were detected with quantitative real-time polymerase chain reaction (qRT-PCR) analysis. The correlation between plasma miR-328 and AF risk factors was analyzed.
RESULTS(1) Compared with the control group, the expression level of plasma miR-328 was significantly elevated in AF group (fold 7.72 ± 9.32) (P < 0.05). (2) In AF group, the expression of plasma miR-328 was significantly different in different type of AF[paroxysmal AF with (1.98 ± 0.81), persistent AF with (6.57 ± 5.82) and permanent AF with (13.47 ± 12.29)] (P < 0.05), and which was increased in proportion to the duration of AF. (3) There was a positive correlation between plasma miR-328 level and left atrial diameter in the AF group (r = 0.310, P < 0.05).
CONCLUSIONmiR-328 expression is significantly increased in patients with AF, which may be involved in the atrial remodeling process of AF.
Aged ; Atrial Fibrillation ; blood ; Case-Control Studies ; Female ; Humans ; Male ; MicroRNAs ; blood ; Middle Aged
7.MicroRNA-29 and fibrosis diseases.
Yan GE ; Guochun CHEN ; Lin SUN ; Fuyou LIU
Journal of Central South University(Medical Sciences) 2011;36(9):908-912
MicroRNAs (miRNAs,miR) are small, noncoding RNAs with 21-23 nucleotides. MicroRNA-29 (miR-29), a newly discovered miRNAs, is closely related with fibrosis diseases. MiR-29 directly suppresses the expression of a variety of extracellular matrix components and regulates signaling pathways associated with fibrosis. The serum level of miR-29 in patients with liver disease is consistent with the degree of liver cirrhosis.
Extracellular Matrix
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genetics
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metabolism
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Humans
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Liver Cirrhosis
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blood
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genetics
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MicroRNAs
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blood
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genetics
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Signal Transduction
8.Sequencing and Proteomic Analysis of Exosomes from Apheresis Platelets in Different Storage Periods.
Xiao-Fei LI ; Yuan ZHANG ; Fei PU ; Ying-Wei SONG ; De-Qing WANG
Journal of Experimental Hematology 2022;30(2):583-592
OBJECTIVE:
To investigate the changes of gene sequencing and proteomics of apheresis platelet (AP) exosomes in different storage periods and predict the function of AP exosomes in different storage periods.
METHODS:
Platelets at different storage periods of 0 day (D0), 3 day (D3) and 5 day (D5) were collected, exosomes were extracted with Gradient centrifugation; gene sequencing and proteomic analysis were used to analyze the exosomes, and biological functions of platelet exosomes were analyzed and predicted by bioinformatics. Liquid mass spectrometry (LMS) was used to detect the changes and function prediction of exosomes proteins. The small RNA sequencing library was prepared, and the constructed library was sequenced and bioinformatics technology was used for data analysis.
RESULTS:
AP exosome iTRAQ protein analysis showed that AP exosomes stored in D3 with 55 up-regulated proteins and 94 down-regulated proteins (P<0.05, FC<0.83 or FC>1.2), while AP exosomes stored in D5 with 292 up-regulated proteins and 53 down-regulated proteins (P<0.05, FC<0.83 or FC>1.2) as compared with D0. KEGG pathway analysis showed that the proteins were mainly involved in transport and metabolism, immune system, cancer, membrane transport and other processes. There were statistically significant differences between AP exosome miRNAs in different storage days (P<0.01). The number of miRNA up-regulated and down-regulated was 374 and 255 as compared with the number of platelet exosomes miRNA stored in D3 and D0, while that was 297 and 242 in D5 and D0, and 252 and 327 in D5 and D3, respectively. The target genes of differential platelet exosome miRNAs were analyzed by GO enrichment. Target genes of differential miRNA were mainly involved in membrane composition, mainly played molecular functions binding to proteins, and participated in biological processes of transcriptional regulation.
CONCLUSION
The exosome differential proteins and miRNAs in D5 are significantly different from those in the D0 of APs, and they are involved in various biological processes.
Blood Component Removal
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Blood Platelets/metabolism*
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Exosomes/metabolism*
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Humans
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MicroRNAs/genetics*
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Proteomics
9.Expression Analysis of miRNA Profiles in Apheresis Platelets during Storage.
Yu-Qing WANG ; Yun-Long ZHUANG ; Ming-Ming QIAO
Journal of Experimental Hematology 2022;30(1):256-263
OBJECTIVE:
To study the expression profiles changes of miRNA in apheresis platelets after 1, 3 and 5 days of storage.
METHODS:
The apheresis platelets were collected from 20 volunteer blood donors. After mixing fully, the platelets were stored in a shaker with (22±2) ℃ horizontal oscillation. The samples were taken on the 1st, 3rd and 5th day, and used to sequence for miRNAs by DNA nanoball (DNB) sequencing technology, which were named as C_1, C_3 and C_5, respectively. The expression level of platelets miRNA was standardized by transcripts per kilobase million (TPM) algorithm. MiRNAs with P-value < 0.001 and the expression difference of more than two times were considered as significant difference between two groups. The expression of miRNAs was verified by real-time fluorescence quantitative PCR (RT-qPCR).
RESULTS:
By DNB sequencing, there were 688, 730, and 679 platelet miRNAs expressed in C_1, C_3 and C_5 group, respectively. Cluster analysis showed that the expression profile of miRNAs changed significantly. The expression level of the first 20 high abundance miRNAs was about 4/5 of the total amounts of expressed miRNAs in each group, which the top five miRNAs were miR-21-5p, miR-26a-5p, miR-199a-3p, miR-126-3p, and let-7f-5p. The correlation of high abundance platelet miRNAs among the three groups was high (R2=0.876, R2=0.979, R2=0.937, respectively) and the differences were not statistically significant (P>0.05). Compared with the differential expression of platelet miRNAs with more than 1 000 TPM in the C_3 and C_1 group, there were 6 differentially expressed miRNAs, including 3 up-regulated (miR-146a-5p, miR-379-5p, and miR-486-5p) and 3 down-regulated (miR-652-3p, miR-142-5p, and miR-7-5p). While in the C_5 and C_1 group, there were 4 differentially expressed miRNAs, including 2 up-regulated (miR-146a-5p and let-7b-5p) and 2 down-regulated (miR-30d-5p and miR-142-5p). Compared with the differentially expression of platelet miRNAs between 1-1 000 TPM in the C_3 and C_1 group, there were 133 differentially expressed miRNAs, in which 99 were up-regulated and 34 were down-regulated. While in the C_5 and C_1 group, there were 77 differentially expressed miRNAs, in which 31 were up-regulated and 46 were down-regulated. The six selected differentially expressed miRNAs verified by RT-qPCR were consistent with those of sequencing.
CONCLUSION
The expression profiles of platelets miRNAs change significantly among 1, 3, and 5 d of storage in vitro.
Blood Component Removal
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Blood Platelets
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Cluster Analysis
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Gene Expression Profiling
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Humans
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MicroRNAs/genetics*
10.Value of serum miR-17-92 cluster in diagnosis of retinoblastoma.
Yan-Zhao CHEN ; Zhi-Ping LIU ; Ke-Ying ZHOU ; Bo LI
Chinese Journal of Contemporary Pediatrics 2017;19(7):776-780
OBJECTIVETo investigate the value of serum miR-17-92 cluster in the diagnosis of retinoblastoma (RB).
METHODSSerum samples were collected from 20 children with RB and 20 healthy controls. Quantitative real-time PCR was used to measure the expression of miR-17-92 cluster. The expression of miR-17-92 cluster was compared between children with different stages of RB and the changes in the expression of miR-17-92 cluster after multimodality therapy were analyzed. The receiver operating characteristic (ROC) curve was used to investigate the value of serum miR-17-92 cluster in the diagnosis of RB.
RESULTSCompared with the healthy controls, the children with RB had significantly higher relative expression of miR-17-3P, miR-17-5P, miR-18a, and miR-20a in serum (P<0.05), and miR-18a showed the greatest increase. There were no significant differences in the relative expression of miR-19a, miR-19b-1, and miR-92a-1 between children with RB and healthy controls (P>0.05). There were no significant differences in the expression of miR-17-5P, miR-17-3P, miR-18a, and miR-20a between the children with early-to-moderate stage of RB and those with advanced stage of RB (P>0.05), but there were significant reductions after multimodality therapy (P<0.05). In the diagnosis of RB, the areas under the ROC curve (AUCs) for serum miR-17-3P, miR-17-5P, miR-18a, and miR-20a were 0.770, 0.755, 0.828, and 0.665 respectively, and miR-18a had the largest AUC, with a sensitivity of 90% and a specificity of 65%.
CONCLUSIONSmiR-17-3P, miR-17-5P, miR-18a, and miR-20a are highly expressed in the serum of children with RB, and miR-18a may be used as a new marker for the diagnosis of RB.
Biomarkers, Tumor ; blood ; Child, Preschool ; Female ; Humans ; Infant ; Male ; MicroRNAs ; blood ; ROC Curve ; Retinoblastoma ; blood ; diagnosis ; genetics