2.Detection of the SRY gene by primed in situ labeling.
Yong NIE ; Xianping DING ; Li DENG ; Ping WEI ; Huan WANG
Chinese Journal of Medical Genetics 2008;25(6):701-703
OBJECTIVETo establish a primed in situ labeling (PRINS) technique which can be more effective in detection of single copy gene.
METHODSOn the basis of traditional PRINS, new reagents and procedures, such as TaqStart antibody, four primers of the sex determining region Y (SRY) gene and TSA(TM) Biotin System were included in detection of the SRY gene. Meanwhile, fluorescence in situ hybridization(FISH) to detect the SRY gene was used as control.
RESULTSFifty metaphases were scored. PRINS labeling showed signals for the SRY on the Y chromosome at band Yp11.3 in all metaphases. These signals were as distinct as that from results of FISH.
CONCLUSIONThis improved method is ideal for rapidly localizing single copy genes and small DNA segments. And PRINS is a cost- and time-effective alternative to FISH.
Gene Dosage ; Genes, sry ; genetics ; Humans ; In Situ Hybridization, Fluorescence ; Male ; Metaphase ; genetics ; Primed In Situ Labeling ; methods
3.Triple-color primed in situ labeling protocol of human metaphase chromosomes.
Chinese Journal of Medical Genetics 2007;24(5):514-517
OBJECTIVETo study the feasibility of simultaneous detection for several chromosomes with optimized triple-color primed in situ labelling (PRINS) protocol in cultured peripheral blood lymphocytes.
METHODSPre-test of gonosome detection with dual-color PRINS protocol was performed to explore and optimize the order and condition of PRINS primers. A peripheral blood sample from a Klinefelter's syndrome patient (47, XXY) had also been studied with optimized triple-color PRINS to prove the correspondence between the number of signals and chromosomes.
RESULTSChromosome 18, X and Y had been simultaneously and specifically marked within 3 hours. The frequency of successful labeling reached 90% both in dual-color and triple-color test. Two chromosome X had been correctly showed in lymphocyte sample of Klinerfelter's syndrome.
CONCLUSIONNumerical chromosome anomalies could be rapidly and exactly detected with this non-ddNTP-blocking multicolor PRINS protocol in peripheral blood lymphocytes. The results of in situ labeling are much clearer with inner control.
Cells, Cultured ; Chromosomes, Human ; genetics ; Color ; Feasibility Studies ; Humans ; Klinefelter Syndrome ; genetics ; pathology ; Lymphocytes ; cytology ; metabolism ; pathology ; Male ; Metaphase ; genetics ; Primed In Situ Labeling ; methods ; Sensitivity and Specificity
4.Variant Philadelphia Chromosome Identified by Interphase Fluorescence In Situ Hybridization (FISH) without Evidence on G-banded Karyotyping and Metaphase FISH.
Mi Kyung KIM ; Yeung Chul MUN ; Chu Myong SEONG ; Wha Soon CHUNG ; Jungwon HUH
The Korean Journal of Laboratory Medicine 2010;30(6):711-717
A variant Philadelphia chromosome (Ph) is generated from translocation of one or more partner chromosomes in addition to chromosomes 9 and 22. We have described the cases of 2 patients bearing variant Ph detected by interphase FISH but not detected by G-banded karyotyping and metaphase FISH. FISH was performed using BCR/ABL dual color dual fusion translocation probes (Abbott Molecular, USA). A 52-year-old man was diagnosed with acute leukemia of mixed phenotype. G-banded karyotyping showed 46,XY,t(9;22)(q34;q11.2)[12]/47,idem,+der(22)t(9;22)[5]/46,XY[3]. Interphase FISH revealed nuc ish(ABL1,BCR)x3(ABL1 con BCRx2)[329/450]/(ABL1,BCR)x4(ABL1 con BCRx3)[5/450]/(AL1,BCR)x3(ABL1 con BCRx1)[44/450]. Metaphase FISH showed ish (9;22)(ABL1+,BCR1+;BCR+,ABL+)[22]/der(22)(BCR+,ABL1+)[3]. The other case was that of a 31-yr-old male patient diagnosed with CML in the blastic phase. G-banded karyotyping of all 20 metaphase cells showed 47,XYYc,dup(1)(q21q32),del(7)(p11.2),t(9;22)(q34;q11.2). Interphase FISH revealed nuc ish(ABL1,BCR)x3(ABL1 con BCRx2)[254/600]/(ABL1,BCR)x3(ABL1 con BCRx1)[191/600]. Metaphase FISH showed ish t(9;22)(ABL1+,BCR+;BCR+,ABL1+)[16]. These results suggest that typical t(9;22) and variant Ph may coexist in the same patient, and interphase FISH may facilitate the detection of the variant Ph that cannot be detected by G-banded karyotyping alone.
Adult
;
Chromosomes, Human, Pair 22
;
Chromosomes, Human, Pair 9
;
Humans
;
In Situ Hybridization, Fluorescence/*methods
;
Interphase
;
Karyotyping
;
Leukemia/diagnosis/genetics
;
Leukemia, Myelogenous, Chronic, BCR-ABL Positive/diagnosis/genetics
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Male
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Metaphase
;
Middle Aged
;
Phenotype
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*Philadelphia Chromosome
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Translocation, Genetic
5.Advance of study on effects of Chfr gene of mitosis prophase checkpoint--review.
Journal of Experimental Hematology 2004;12(6):870-874
Chfr, a mitotic stress checkpoint gene, regulates a prophase delay in cells exposed to agents that disrupt microtubules, such as nocodazole and taxol. Chfr expression was ubiquitious in normal human tissues. It is very high conserved between human and mice. Preliminary sutdies indicated that Chfr expression was cell cycle regulated and it dependent on its ubiqitin ligase activity. The direct target of the Chfr pathway was Polo-like kinase 1 (Plk1). Ubiquitination of Plk1 by Chfr delayed the activation of the Cdc25C phosphatase and the inactivation of the Weel kinase, leading to a delay in Cdc 2 activation. The chfr gene was inactivated owing to lack of expression or by mutation in some human cancer cell lines examined. Normal primary cells and tumour cell lines that express wild-type chfr exhibited delayed entry into metaphase when centrosome separation was inhibited by mitotic stress. In contrast, the tumour cell lines that had lost chfr function entered metaphase without delay. Ecotopic expression of wild-type chfr restored the cell cycle delay and increased the ability of the cells to survive mitotic stress. Thus, chfr defines a checkpoint that delays entry into metaphase in response to mitotic stress. The progress of research on structure of Chfr gene and effects of Chfr protein was reviewed.
Cell Cycle
;
genetics
;
physiology
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Cell Cycle Proteins
;
genetics
;
metabolism
;
physiology
;
Humans
;
Metaphase
;
genetics
;
physiology
;
Mitosis
;
genetics
;
physiology
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Neoplasm Proteins
;
genetics
;
physiology
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Neoplasms
;
genetics
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metabolism
;
pathology
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Poly-ADP-Ribose Binding Proteins
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Prophase
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genetics
;
physiology
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Protein-Serine-Threonine Kinases
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metabolism
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Protein-Tyrosine Kinases
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metabolism
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Proto-Oncogene Proteins
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metabolism
;
Ubiquitin-Protein Ligases
6.Ring Chromosome 5 in Acute Myeloid Leukemia Defined by Whole-genome Single Nucleotide Polymorphism Array.
Jungwon HUH ; Yeung Chul MUN ; Wha Soon CHUNG ; Chu Myong SEONG
Annals of Laboratory Medicine 2012;32(4):307-311
Chromosomes forming a corresponding ring cannot be clearly defined by conventional cytogenetics or FISH. Karyotypic analyses using whole-genome single nucleotide polymorphism arrays (SNP-A) may result in the identification of previously cryptic lesions and allow for more precise definition of breakpoints. We describe a case of AML with metaphase cells bearing -5, del(11)(q22), and +r. With SNP-A, a 5p-terminal deletion (11 megabases [Mb]), a 5q-terminal deletion (27 Mb), an 11q-interstitial deletion (29 Mb), and a 21q gain (3 Mb) were identified. Therefore, the G-banded karyotype was revised as 46, XY, r(5)(p15. 2q33.2), del(11)(q14.1q23.2), dup(21)(q22.13q22.2)[18]/46,XY[2]. SNP-A could be a powerful tool for characterizing ring chromosomes in which the involved chromosomes or bands cannot be precisely identified by conventional cytogenetics or FISH.
Chromosome Deletion
;
*Chromosomes, Human, Pair 5
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Humans
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In Situ Hybridization, Fluorescence
;
Karyotyping
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Leukemia, Myeloid, Acute/*diagnosis/genetics
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Male
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Metaphase
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Middle Aged
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Oligonucleotide Array Sequence Analysis
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*Polymorphism, Single Nucleotide
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*Ring Chromosomes
7.Combination of interphase- and metaphase-fluorescence in situ hybridization to identify 11q23/MLL abnormalities in acute leukemia patients.
Xi-chen ZHAO ; Cheng-wen LI ; Yun DAI ; Xu-ping LIU ; Shuang QIN ; Shi-he LIU ; Ying-chang MI ; Jian-xiang WANG
Chinese Journal of Hematology 2006;27(10):682-686
OBJECTIVETo explore a rapid, sensitive and effective method for identifying 11 q23/MLL gene rearrangements and investigate the incidence and clinical features of adult acute leukemia (AL) patients with 11 q23/MLL abnormalities.
METHODSBone marrow samples from 112 adult AL patients were prepared by short-term (24 hours) unstimulated culture, and karyotyped by R-banding. The abnormal signals were screened by interphase- fluorescence in situ hybridization (FISH) with dual-color break-apart 11 q23/MLL-specific probe, and the 11 q23/MLL gene rearrangements were determined by metaphase-FISH.
RESULTSOf the 112 patients,9 (8. 0%) with 11q23/MLL translocations were revealed by FISH, among which only 4 (3. 6% ) was revealed by CCA. Three patients were reported by CCA to have del( 11) ( q23) , while by FISH assay two of them were 11 q23/MLL translocation and one was true deletion of I lq23 telomeric terminus. Furthermore by FISH assay II q23/MLL translocations were identified in one each patient with normal karyotype, with 11 q + and without overt 11 q23 abnormality. Eight patients with MLL gene amplification including polysome, homogenous staining region (hsr) and double minute chromosome (dmin) were also disclosed by FISH. AL patients with 11 q23/MLL abnormalities were frequently diagnosed as pro-B acute lymphoblastic leukemia (pro-B ALL) ,acute monocytic leukemia (AMoL) or biphenotypic acute leukemia (BAL).
CONCLUSIONFISH with dual-color break-apart I q23/MLL -specific probe is a rapid and sensitive method to detect 11 q23/MLL abnormalities, as compared with CCA. FISH also effectively discloses translocations and amplifications involving 11 q23/MLL,and should be performed in patients diagnosed as pro-B ALL,AMoL or BAL, with CCA normal karyotype.
Acute Disease ; Adolescent ; Adult ; Aged ; Child ; Chromosome Deletion ; Chromosomes, Human, Pair 11 ; genetics ; Female ; Gene Rearrangement ; Histone-Lysine N-Methyltransferase ; Humans ; In Situ Hybridization, Fluorescence ; methods ; Interphase ; genetics ; Leukemia ; genetics ; Male ; Metaphase ; genetics ; Middle Aged ; Myeloid-Lymphoid Leukemia Protein ; genetics ; Translocation, Genetic
8.AZF microdeletions associated with idiopathic and non-idiopathic cases with cryptorchidism and varicocele.
Rima DADA ; N P GUPTA ; K KUCHERIA
Asian Journal of Andrology 2002;4(4):259-263
AIMTo identify submicroscopic interstitial deletions in azoospermia factor (AZF) loci in idiopathic and non-idiopathic cases of male infertility in Indians.
METHODSOne hundred and twenty two infertile males with oligozoospermia or azoospermia were included in this study. Semen analysis was done to determine the sperm density, i.e., normospermia (>20 million/mL), oligozoospermia (<20 million/mL) or azoospermia. They were subjected to detailed clinical examination and endocrinological and cytogenetic study. Thirty G-banded metaphases were analyzed in the 122 cases and polymerase chain reaction (PCR) microdeletion analysis was done in 70 cytogenetically normal subjects. For this genomic DNA was extracted using peripheral blood. The STS primers tested in each case were sY84, sY86 (AZFa); sY127, sY134 (AZFb); sY254, sY255 (AZFc). PCR amplifications found to be negative were repeated at least 3 times to confirm the deletion of a given marker. The PCR products were analyzed on a 1.8 % agarose gel.
RESULTSEight of the 70 cases (11.4 %) showed deletion of at least one of the STS markers. Deletions were detected in cases with known and unknown aetiology with bilateral severe testiculopathy and also in cryptorchid and varicocele subjects.
CONCLUSIONAZF microdeletions were seen in both idiopathic and non-idiopathic cases with cryptorchidism and varicocele. The finding of a genetic aetiology in infertile men with varicocele and cryptorchidism suggests the need for molecular screening in non-idiopathic cases.
Adult ; Biopsy, Needle ; Chromosome Banding ; Chromosomes, Human, Y ; Cryptorchidism ; genetics ; Follicle Stimulating Hormone ; blood ; Gene Deletion ; Genetic Loci ; Humans ; Male ; Metaphase ; Oligospermia ; etiology ; genetics ; Polymerase Chain Reaction ; Reference Values ; Semen ; chemistry ; Seminal Plasma Proteins ; genetics ; Sperm Count ; Testis ; pathology ; Varicocele ; genetics
9.Sec13 induces genomic instability in U2OS cells.
Choong Ryoul SIHN ; Eun Jung SUH ; Kee Ho LEE ; Sang Hoon KIM
Experimental & Molecular Medicine 2005;37(3):255-260
Sec13p has been known as an endoplasmic reticulum-Golgi transport protein. Recently, it has also been shown to be required for the formation of septation in the fission yeast Schizosaccharomyces pombe. In the present study, we focused on the role of a human homolog of Saccharomyces cerevisiae SEC13, Sec13 protein during mitosis in U2OS cells. We found that the expression of Sec13 was constant throughout the cell cycle, and localized to the kinetochores at metaphase during mitosis. By using green fluorescent protein technology, we observed that Sec13 is required for evasion of mitotic arrest in response to spindle damage, leading to G1-like phase and apoptotic cell death. In addition, cells expressing exogenous Sec13 showed giant nuclei compared to endogenous ones in the absence of nocodazole. These results demonstrate that Sec13 is involved in the regulation of the metaphase/anaphase transition and may be functionally associated with mitotic machinery to maintain genomic stability during mitosis.
Anaphase
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Antineoplastic Agents/pharmacology
;
Cell Line, Tumor/drug effects/metabolism/pathology
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*G1 Phase
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*Genomic Instability
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Green Fluorescent Proteins/metabolism
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Humans
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Kinetochores/metabolism
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Membrane Proteins/*genetics/metabolism
;
Metaphase
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Mitosis/*physiology
;
*Mitotic Spindle Apparatus
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Nocodazole/pharmacology
;
Osteosarcoma/genetics/metabolism/pathology
;
Research Support, Non-U.S. Gov't
10.Effect of RAD18-siRNA on proliferation and chemotherapy sensitivity of human esophageal squamous cell carcinoma ECA-109 cells.
Pengrong LOU ; Xiaonan SUN ; Jundong ZHOU ; Shitao ZOU
Journal of Zhejiang University. Medical sciences 2016;45(4):364-370
To investigate the effect of RAD18-siRNA on cell proliferation and chemotherapy sensitivity of esophageal squamous cell carcinoma (ESCC) ECA-109 cells.RAD18-siRNA was transfected into human ECA-109 cells by Lipofectamine 3000. Quantitative PCR and Western blot were performed to detect RAD18 and CyclinD1 expression; CCK-8 assay was used to determine cell proliferation and chemotherapy drug sensitivity; flow cytometry was used to determine cell cycle. Correlation between RAD18 and CyclinD1 mRNA expression was analyzed by Pearson's correlation.Compared with non-transfected cells, the expression of RAD18 in RAD18-siRNA group was significantly decreased (<0.05). The cell proliferation was inhibited (<0.05) and the cell number of G1 phase was increased, G2/M phase cells decreased (<0.05) in RAD18-siRNA group. After treatment with different concentrations of cisplatin or 5-FU, the survival rate of the two cell groups was reduced (all<0.05), and the IC50 of RAD18-siRNA group was significantly lower than that of non-transfected group (<0.05). The mRNA expression of RAD18 was positively correlated with CyclinD1 expression in ESCC tissues(=0.478,<0.01).Down-regulated expression of RAD18 can decrease the cell proliferation and increase chemo-sensitivity of ESCC cells, and CyclinD1 may participate in the process.
Adjuvants, Pharmaceutic
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pharmacology
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Carcinoma, Squamous Cell
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drug therapy
;
physiopathology
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Cell Cycle
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Cell Line, Tumor
;
Cell Proliferation
;
drug effects
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Cisplatin
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pharmacology
;
Cyclin D1
;
drug effects
;
genetics
;
DNA-Binding Proteins
;
administration & dosage
;
pharmacology
;
Down-Regulation
;
drug effects
;
genetics
;
Drug Resistance, Neoplasm
;
drug effects
;
Drug Screening Assays, Antitumor
;
methods
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Drug Synergism
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Esophageal Neoplasms
;
drug therapy
;
physiopathology
;
Fluorouracil
;
pharmacology
;
G1 Phase
;
drug effects
;
G2 Phase
;
drug effects
;
Humans
;
Metaphase
;
drug effects
;
RNA, Small Interfering
;
administration & dosage
;
pharmacology
;
Transfection
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Ubiquitin-Protein Ligases
;
administration & dosage
;
pharmacology