1.Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients
Li LIANSHUO ; Wang ZICHENG ; He PENG ; Ma SHINING ; Du JIE ; Jiang RUI
Genomics, Proteomics & Bioinformatics 2016;14(5):314-324
Although networks of microbial species have been widely used in the analysis of 16S rRNA sequencing data of a microbiome, the construction and analysis of a complete microbial gene network are in general problematic because of the large number of microbial genes in metagenomics studies. To overcome this limitation, we propose to map microbial genes to functional units, includ-ing KEGG orthologous groups and the evolutionary genealogy of genes:Non-supervised Ortholo-gous Groups (eggNOG) orthologous groups, to enable the construction and analysis of a microbial functional network. We devised two statistical methods to infer pairwise relationships between microbial functional units based on a deep sequencing dataset of gut microbiome from type 2 dia-betes (T2D) patients as well as healthy controls. Networks containing such functional units and their significant interactions were constructed subsequently. We conducted a variety of analyses of global properties, local properties, and functional modules in the resulting functional networks. Our data indicate that besides the observations consistent with the current knowledge, this study provides novel biological insights into the gut microbiome associated with T2D.
2.Surgical treatment of lung cancer via intrapericardial vascular management: A report of 56 cases.
Renye KOU ; Guiwu SUN ; Zhiqiang ZOU ; Lei YUAN ; Shining XU ; Bin MA
Chinese Journal of Lung Cancer 2002;5(4):282-283
BACKGROUNDTo study the significance of pneumonectomy via intrapericardial vascular management in the surgical treatment of lung cancer.
METHODSA total of 56 patients with central-type lung cancer underwent pneumonectomy via intrapericardial vascular management.
RESULTSThe incidence of postoperative complications was 8.93%(5/56). One patient died and the mortality rate was 1.97%. The postoperative follow up rate was 96.4%. The 1-, 3- and 5-year survival rates were 72.7%(40/55), 31.4%(11/35) and 17.4% (4/23) respectively.
CONCLUSIONSPneumonectomy via intrapericardial vascular management is safe and can improve the resection rate. It might provide a basis for the further treatment of lung cancer and should be widely applied.
3.Correlation of upper extremity somatosensory evoked potentials with sensory and motor functions in stroke pa-tients in different stages
Shining YANG ; Jiang MA ; Hong LI ; Liying GUO ; Xianying LIU ; Lifang ZHANG
Chinese Journal of Rehabilitation Theory and Practice 2024;30(6):701-708
Objective To investigate the correlation between somatosensory evoked potentials(SEP)of upper limbs,and sensory and motor functions in stroke patients in different stages. Methods From June,2021 to October,2023,177 stroke patients in Shijiazhuang People's Hospital were diveded into acute stage group(within 14 days,n=25),early recovery group(14 days to one month,n=110)and middle to late recovery group(one to six months,n=42)according to the duration of the disease.General information of the patients was recorded;SEP examination was performed,and N20 lantency and amplitude were recorded.Monofilament touch and two-point discrimination sensation of the patient's hands were tested using the monofila-ment and two-point discrimination tools,respectively;and motor function was assessed with Fugl-Meyer Assess-ment-Upper Extremities(FMA-UE).The correlation between SEP,and the sensory and motor scores in each group was analyzed. Results There was no significant difference in the monofilament tactile and two-point discrimination scores among the three groups(P>0.05).SEP was not correlated with sensory and motor functions in the acute stage group(P>0.05);in the early recovery group,N20 latency was negatively correlated with monofilament tactile sensation(r=-0.267,P=0.005)and positively correlated with two-point discrimination sensation(r=0.220,P=0.021),and N20 amplitude was positively correlated with monofilament tactile sensation(r=0.328,P<0.001)and FMA-UE score(r=0.418,P<0.001),and negatively correlated with two-point discrimination(r=-0.405,P<0.001);in the middle to late recovery group,the N20 latency was negatively correlated with FMA-UE score(r=-0.313,P=0.044),and N20 amplitude was positively correlated with monofilament tactile sensation(r=0.598,P<0.001)and FMA-UE score(r=0.393,P=0.010),and negatively correlated with two-point discrimination(r=-0.591,P<0.001).Multiple linear regression analyses showed that the score of monofilament tactile sensa-tion was negatively correlated with N20 latency(β=-0.510,P=0.046),and the FMA-UE score was positively correlated with N20 amplitude(β=0.313,P=0.026)in the middle to late recovery group;in the early recovery group,the two-point discriminative sensation score was negatively correlated with N20 amplitude(β=-0.270,P=0.039). Conclusion The correlation between SEP and sensory and motor functions becomes more significant with the prolonga-tion of disease.
4.Characteristics of staphylococcal cassette chromosome mec and lugdunin operon genes in the complete genome of Staphylococcus lugdunensis.
Shining FU ; Yusheng CHEN ; Ke HU ; Tian QIN ; Yukun HE ; Lili ZHAO ; Xinqian MA ; Li CHEN ; Wenyi YU ; Yan YU ; Yu XIE ; Yifan WANG ; Donghong YANG ; Yu XU ; Zhancheng GAO
Chinese Medical Journal 2023;136(11):1367-1369