1.Relationship between the registration range and accuracy of CT images and CBCT images
Jianfeng SUI ; Hongfei SUN ; Liugang GAO ; Kai XIE ; Tao LIN ; Xinye NI
Chinese Journal of Radiological Medicine and Protection 2017;37(4):306-310
Objective To investigate the impact on registration accuracy with the different registration ranges of CBCT images and CT images.Methods CBCT and CT scans were performed on the of 5 patients.The registration ranges of five patients' images of abdomen,head and chest performed CBCT and CT scanning were processed with four modes.Mode 1:the registration range of CT images was larger than the registration range of CBCT images,mode 2:the registration range of CT images and CBCT images were equally,mode 3:taking a 5 cm translation of CT images range from mode 2,mode 4:The CBCT range and CT range reduced 2 cm both sides simultaneously from mode 2.Using the registration program from Insight Segmentation and Registration Toolkit (ITK) to the four modes,the Mean Square Difference (MSD) metric values of four modes after registration were compared and the relationship between mode 2 and another three modes was analyzed by paired t test.Results For the MSD metric values,mode 3 was maximum,mode 2 and 4 were minimum,and mode 1 was centered.The difference between the mode 2 and mode 4 was not statistically significant(P > 0.05).The difference between the mode 2 and mode 1 was statistically significant(t =-4.586,-4.164,-5.618,P < 0.05).The difference between the mode 2 and mode 3 was statistically significant(t =-6.423,-8.109,-19.601,P<0.05).Conclusion The registration ranges of CBCT and CT images has a certain extent of influence on the accuracy of image registration.The closer the registration range of CBCT and CT is,the higher the registration accuracy is.
2.Research progresses in feature extraction of radiomics
Kai XIE ; Hongfei SUN ; Tao LIN ; Liugang GAO ; Jianfeng SUI ; Xinye NI
Chinese Journal of Medical Imaging Technology 2017;33(12):1792-1796
Radiomics refers to the comprehensive quantification of information such as tumor biological feature and heterogeneity through assessing a large number of quantitative image features from ROI of CT,MRI and PET images.With the development of data science,radiomics has been paid more and more attention.Feature extraction is an important step of Radiomics.The processes in feature extraction of radiomics were reviewed in this paper.
3.Effects of metal artifact correction based on 12 and 16 bit CT images on dose distribution in radiotherapy
Liugang GAO ; Hongfei SUN ; Kai XIE ; Tao LIN ; Jianfeng SUI ; Xinye NI
Chinese Journal of Radiological Medicine and Protection 2017;37(12):938-945
Objective To apply metal artifact reduction algorithm to reduce metal artifacts based on 12 bit and 16 bit CT images,and aimed to analyze the effects on CT value and dose distribution.Methods The metal implant was inserted into the phantom,and the original 12 bit CT image and original 16 bit CT image were derived from CT scanning.The images were processed using NMAR algorithm,so the corrected 12 bit image and corrected 16 bit image were obtained.A patient's CT was chosen with artificial femur,and used the NMAR algorithm to reduce metal artifacts.Furthermore,the CT values of original images and corrected images were compared and analyzed.In the planning system,dose distribution was calculated based on each image by same radiation treatment plan.The dose distribution difference of each image was compared and analyzed.Results For the 12 bit image,the CT value of metal was 3 071 HU,which was much smaller than the metal's actual CT value ll 080 HU.The metal's CT value for the 16bit image was 11 098 HU,which was very close to the actual value.The original CT images contained a lot of artifacts around the metal,resulting in a large deviation of CT values from the reference image.After NMAR correction,metal artifacts were reduced significantly,and the CT values were close to the reference images.The dose distribution of the corrected 16 bit image was closest to that of the reference image.The maximum dose deviation on the central axis was 1.8%.The difference between the 12 bit image and the reference image downstream the metal was notable,and the maximum dose deviation on the central axis was 81.6%.The X-rays passed through the artifact region in original image,the dose distribution was obviously different from the reference image,and the maximum dose deviation was 21.6%.Conclusions For the patient with metal implant,using the NAMR algorithm on the 16 bit image result in accurate CT value of CT image,so that the accurate dose distribution will be obtained.
4.Down-regulation of VEGFA increases the radio sensitivity of esophageal cancer ECA-109 cell
Xiaokun WENG ; Lijun HU ; Fei SUN ; Jianlin WANG ; Kai XIE ; Ze KONG ; Mengyun ZHOU ; Liugang GAO ; Jingping YU
Chinese Journal of Radiological Medicine and Protection 2020;40(11):813-819
Objective:To observe the effect and underlying mechanism of down-regulation of VEGFA on the radiosensitivity of esophageal cancer ECA-109 cells.Methods:Esophageal cancer cells were divided into four groups: sh-VEGFA group, vector control group, X-ray plussh-VEGFA group and X-ray plus vector group. The expressions of VEGFA gene and protein were detected by qPCR and Western blot, respectively. Cell proliferation and survival was measured by CCK8 assay and cloning formation, respectively. Cell apoptosis was detected by flow cytometry, and γ-H2AX foci were detected by immune-fluorescence assay.Results:Compared with the vector group, the expression of VEGFA gene was decreased in sh-VEGFA group ( t=11.98, P<0.05), and the expression of VEGFA protein was also reduced( t=12.38, P<0.05). After VEGFA being down-regulated, the cell proliferation( A450)was obviously inhibited( t=2.78, 7.25, 21.93, 13.21, P<0.05), and the cell clone formation of the sh-VEGFA group was significantly decreased so that D0, Dqand SF2 of sh-VEGFA group were decreased( t=5.83, 8.56, 7.68, P<0.05), and SERD0and SERDqwere increased. Compared with the vector group, the apoptosis rate in the sh-VEGFA group and the X-ray group was significantly increased and further increased in the sh-VEGFA plus X-ray group( t=17.63, 22.48, 33.87, P<0.05), and the number of γ-H2AX foci in both sh-VEGFA and vector groups were significantly increased within 2 h after X-ray irradiation. At 24 h after irradiation, the number of γ-H2AX foci returned to normal level in the vector group but remained at a higher level in the sh-VEGFA group ( t=7.00, P<0.05). Conclusions:Down-regulation of VEGFA inhibits the proliferation and colony formation, promotes apoptosis and hence increases the radiosensitivity of esophageal carcinoma cells via a pathway related to DNA damage repair.
5.Study of volume resolution of prostate motion target by four-dimensional ultrasound
Zhengda LU ; Hui BI ; Chunying LI ; Mu HE ; Liugang GAO ; Jiawei SUN ; Kai XIE ; Tao LIN ; Jianfeng SUI ; Xinye NI
Chinese Journal of Radiation Oncology 2021;30(12):1292-1296
Objective:To explore the volume resolution of prostate motion target by four-dimensional (4D) ultrasound.Methods:The prostate ultrasound model was selected, and the group comparison study was conducted using 4D ultrasound to outline the prostate target under different motion amplitudes (A) and motion period (T). The simulated A value was set as 0.5 mm, 1 mm, 2 mm, 3 mm, 4 mm, and 5 mm, respectively. The T value was set as 1 s, 2 s, 3 s, and 4 s, respectively. The volume of the target of the model prostate was calculated, and the static ultrasound image of the target was used as the control group to analyze the difference between two groups.Results:When the model was still, the size of the target of ultrasound was consistent with that of CT scan ( P>0.05). When the A values were 0.5 mm and 1 mm, there was no statistical difference between the volume in period 1-4 s and the volume in the target at rest (all P>0.05). When the A values were 2 mm and 3 mm, and the T values were 1 s, 2 s and 3 s there was statistical difference between the volume of target and that of of static ultrasonic target (all P<0.05). When the A value was 2 mm and the T value was 4 s, there was no statistical difference between the target volume and the static target volume ( P=0.710). The range within the group was 6.7 cm 3, and the standard deviation was 1.15 cm 3. When the A value was 3 mm and the T value was 4 s, the volume repeatability of the target was poor, and the range within the group was 14.4 cm 3; when the A values were 4 mm and 5 mm, and the T values were 1-4 s, the range within the group was 3.27-17.63 cm 3 and 6.51-21.02 cm 3, respectively. The volume repeatability of the target under each period was extremely poor, which could not meet the clinical requirements. Conclusion:4D ultrasound can provide reliable reference data for patients′ target delineation within 1-4 s of motion cycle and within 1 mm of motion amplitude, which exerts on effect upon the original position of probe.
6.Development and application of three-dimensional point cloud radiotherapy real-time monitoring system based on depth camera
Chunying LI ; Zhengda LU ; Sai ZHANG ; Jiawei SUN ; Liugang GAO ; Kai XIE ; Tao LIN ; Jianfeng SUI ; Xinye NI
Chinese Journal of Radiation Oncology 2023;32(2):145-151
Objective:To develop the real-time radiotherapy monitoring system of three-dimensional (3D) point cloud by using depth camera and verify its feasibility.Methods:Taking the depth camera coordinate system as the world coordinate system, the conversion relationship between the simulation CT coordinate system and the world coordinate system was obtained from the calibration module. The patient's simulation CT point cloud was transformed into the world coordinate system through the above relationship, and registered with the patient's surface point cloud obtained in real-time manner by the depth camera to calculate the six-dimensional (6D) error, and complete the positioning verification and fractional internal position error monitoring in radiotherapy. Mean and standard deviation of 6D calculation error, Hausdorff distance of point cloud after registration and the running time of each part of the program were calculated to verify the feasibility of the system. Fifteen real patients were selected to calculate the 6D error between the system and cone beam CT (CBCT).Results:In the phantom experiment, the errors of the system in the x, y and z axes were (1.292±0.880)mm, (1.963±1.115)mm, (1.496±1.045)mm, respectively, and the errors in the rotation, pitch and roll directions were 0.201°±0.181°, 0.286°±0.326°, 0.181°±0.192°, respectively. For real patients, the translational error of the system was within 2.6 mm, the rotational error was approximately 1°, and the program run at 1-2 frames/s. The precision and speed met the radiotherapy requirement. Conclusion:The 3D point cloud radiotherapy real-time monitoring system based on depth camera can automatically complete the positioning verification before radiotherapy, real-time monitoring of body position during radiotherapy, and provide error visual feedback, which has potential clinical application value.
7.Study of different dose calculation algorithms for the phantom of metallic implants
Tao LIN ; Xinye NI ; Liugang GAO ; Jiangfeng SUI ; Kai XIE ; Shuquan CHANG
Chinese Journal of Radiation Oncology 2018;27(7):680-684
Objective To compare the dose difference between the 12-bit and 16-bit CT images containing metallic implants calculated by different algorithms. Methods The titanium alloy rod was inserted into the phantom and subject to CT scan and then the 12-bit and 16-bit CT images were reconstructed. The CT images were online transmitted to the Monaco planning system and a 0° of single field was designed. The dose distribution was calculated by PB (Pencil Beam), CC (Collapsed Cone) and MC (Monte Carlo) algorithms, respectively. The CT-ED curve was expanded and the dose was recalculated. The depth dose curve through the center of the metallic implants along with the direction of the field was obtained by using the Matlab 8. 3 statistical software. The dose distribution curves between 12-bit and 16-bit CT images calculated by different algorithms and the dose difference of varying distances between the incident and the exit surfaces of metallic implants were statistically compared. The dose was measured by thimble chamber. Results The 16-bit CT images accurately read the CT values of the metallic implants. After the CT-ED curve was expanded, the dose on the incident surface of metallic implant was reduced by 5. 43% and that on the exit surface was increased by 25. 56% calculated by PB algorithm compared with MC algorithm. The dose on the posterior exit surface was higher than that of MC algorithm. The dose on the incident surface of metallic surface was decreased by 4. 5%, whereas that on the exit surface was reduced by 4. 31% using CC algorithm. The dose on the posterior exit surface was more significantly reduced. The calculated values by MC algorithm were the most close to the measured values. Conclusions Application of 16-bit CT image, CT-ED curve expansion of the treatment planning system combined with MC algorithm can enhance the accuracy of dose calculation for the patients containing metallic implants during radiotherapy.
8.Research of obtaining pseudo-CT images based on ultrasound deformation fields in radiotherapy
Hongfei SUN ; Chang GUO ; Tao LIN ; Liugang GAO ; Jianfeng SUI ; Kai XIE ; Xinye NI ; Xia HE
Chinese Journal of Radiation Oncology 2019;28(4):297-301
Objective An improved method for obtaining pseudo-computed tomography (CT ps) based on ultrasound deformation field.Methods The three-dimensional image data of computed tomography and ultrasound for three postoperative cervical cancer patients were selected,including the CT (CTsim) and ultrasound (USsim) images obtained during the simulated positioning stage,and the cone beam CT (CBCT) and ultrasound images obtained during the positioning verification stage of the treatment one week later.Binary masks of the OROI and OROW were created and applied in ultrasound image registration;thus,the deformation field was obtained.The deformation field was applied to CTsim images and different pseudo-CT images were obtained.Similarities between these pseudo-CT images and those of CBCT were compared,and registration accuracies between pseudo-CT images under different binary masks and CTsim were discussed.Results The averages of the correlation coefficient between pseudo-CT based on OROI,OROW,no binary mask and CBCT were 0.95,0.82 and 0.64 respectively.The average of the normalized mean square Error were 0.12,0.42 and 0.57 respectively.Conclusion The pseudo-CT based on OROI binary mask matches the best with CTsim and achieves the highest similarity with CBCT.
9.Research hotspots and frontiers of stem cells for Alzheimer's disease
Liugang XIE ; Shuke CUI ; Nannan GUO ; Aoyu LI ; Jingrui ZHANG
Chinese Journal of Tissue Engineering Research 2025;29(7):1475-1485
BACKGROUND:Stem cells can promote nerve regeneration,repair damaged nerves,inhibit inflammation and apoptosis of nerve cells,and provide a new way for the treatment of Alzheimer's disease. OBJECTIVE:To make a bibliometrical analysis of the articles on stem cell therapy for Alzheimer's disease published internationally from 2004 to 2023,in order to reveal the research hotspot and trend of stem cell therapy for Alzheimer's disease. METHODS:From the Web of Science Core Collection database,by using Excel,VOSviewer,and Citespace software,the annual number of publications,countries,institutions,journals/co-cited journals,authors,and keywords of articles related to stem cells and Alzheimer's disease published from January 1,2004 to October 31,2023 were visually analyzed. RESULTS AND CONCLUSION:A total of 3 521 core papers were included,and the number of published papers increased year by year.The United States is the country with the most papers.Harvard Medical School is the most prolific institution.Maiese kenneth is the author with the most papers.International Journal of Molecular Sciences has the most papers in this field.The journal PLoS One published the most citations.At present,the field of stem cell therapy for Alzheimer's disease focuses on pathophysiological mechanism and animal experimental research,and"neurogenesis","oxidative stress","extracellular vesicles",and"mesenchymal stem cells"are the research trends in this field.Stem cell therapy for Alzheimer's disease has broad prospects.In the future,exchanges and cooperation between institutions and authors should be strengthened to further explore the main mechanism of stem cell therapy for Alzheimer's disease,solve possible clinical problems such as immune rejection,effectiveness,and safety,and further tap the potential of stem cells in the treatment of Alzheimer's disease.
10.Reconstruction of thoracic CT based on single-view projection with a cycle dual-task network in radiotherapy
Jiawei SUN ; Sai ZHANG ; Heng ZHANG ; Kai XIE ; Liugang GAO ; Tao LIN ; Jianfeng SUI ; Xinye NI
Chinese Journal of Radiation Oncology 2023;32(9):829-835
Objective:To construct a cycle dual-task network based on cycleGAN to implement 3D CT synthesis from single-view projection for adaptive radiotherapy of thoracic tumor and then evaluate image quality and dose accuracy.Methods:A total of 45 thoracic tumor patients admitted to the Affiliated Changzhou No.2 People's Hospital of Nanjing Medical University were collected, and 991 cases were also selected from public dataset as pretrained dataset. Multi-view projections were acquired by ASTRA algorithm. The public dataset was divided into a training set of 800 cases, a validation set of 160 cases and a test set of 31 cases. The dataset obtained from patients in our hospital was divided into a training set of 40 cases and a test set of 5 cases. The network included synthetic CT model and multi-view projection prediction model and achieved the dual-task training. The final test only used the synthetic CT model to acquire the predicted CT images and deliver image quality [mean absolute error (MAE), peak signal-to-noise ratio (PSNR) and structural similarity index (SSIM)] and dose evaluation.Results:Image quality evaluation metrics for synthetic CT showed high image synthesis accuracy with MAE of 0.05±0.01, PSNR of 19.08±1.69, SSIM of 0.75±0.04, respectively. The dose distribution calculated on synthetic CT was also close to the actual dose distribution. The mean 3%/3 mm γ pass rate for synthetic CT was 93.1%.Conclusions:A dual-task cycle network modified on cycleGAN has been implemented to rapidly and accurately predict 3D CT from single-view projection, which can be applied to the workflow of adaptive radiotherapy for thoracic cancer. Both image generation quality and dosimetric evaluation demonstrate that synthetic CT can meet the clinical requirements for radiotherapy.