1.Cross-linking and immunoprecipitation assay and its development
Lingyue XING ; Yan ZHANG ; Jing HUANG ; Ping LI ; Yang WANG ; Minglei SHI ; Zhihu ZHAO
Military Medical Sciences 2013;(11):867-869
It′s reported that RNA-binding proteins ( RBP) play key roles in post-transcriptional regulation of eukaryotic genes.The aberrations of RBP are associated with a large number of human disorders , particularly autoimmune and neuro-logic diseases .The interaction between RNA and proteins has been widely explored since the development of the method known as RNA immunoprecipitation with differential display or microarray analysis (RIP-ChIP) around the year of 2000. Since then, diverse derivatives of the RIP-ChIP, such as ultraviolet crosslinking and immunoprecipitation ( CLIP), high-throughput sequencing of CLIP cDNA library (HITS-CLIP), photoactivatable -ribonucleoside-enhanced crosslinking and immunoprecipitation ( PAR-CLIP) , and individual nucleotide resolution CLIP ( iCLIP ) have been developed .All these methods have some advantages over the original RIP-ChIP and greatly facilitate the study of RBP-RNA interactions .Addi-tionally , aided by the next-generation sequencing , transcriptome-wide identification of RBP target sites has become possible and the RNA-binding site resolution of RBP has also improved to some degree .We introduced the basic principles and processes of the interactions between proteins and RNA , focusing on the advantages , disadvantages and prospect of the present genome-wide version of CLIP .
3.Comparison of tonal response properties of primary auditory cortex neurons of adult rats under urethane and ketamine anesthesia.
Lingyue HUANG ; Lin BAI ; Yan ZHAO ; Zhongju XIAO
Journal of Southern Medical University 2013;33(6):785-793
OBJECTIVETo compare tonal response properties of neurons in the primary auditory cortex of Sprague-Dawley rats anesthetized with urethane and ketamine-xylazine.
METHODSForty-five female Sprague-Dawley rats (200-250 g) were randomized into two groups and anesthetized with urethane or ketamine-xylazine. Tone pips were chosen as the stimuli to obtain the action potentials of the single neurons by in vivo cell-attached recording. The features of the action potentials were extracted with Matlab software to comparatively analyze the acoustic response properties of the neurons between the two anesthetic groups.
RESULTSThe Q values and the characteristic frequencies were independent of the types of anesthetic agents, but with urethane anesthesia, the neurons tended to have higher minimum thresholds, lower spontaneous firing rates, longer response latencies, and more frequent occurrence of tuning with stronger inhibition compared to those in ketamine-xylazine group.
CONCLUSIONUrethane and ketamine might have no obvious impact on the transmission pathway of frequency tuning from the periphery to the auditory cortex, but neurons from rats with urethane anesthesia receive enhanced inhibition mediated by the interneurons or have a lower intrinsic excitability.
Anesthetics ; pharmacology ; Animals ; Audiometry, Pure-Tone ; Auditory Cortex ; drug effects ; physiology ; Female ; Ketamine ; pharmacology ; Neurons ; drug effects ; Rats ; Rats, Sprague-Dawley ; Urethane ; pharmacology
4.Research progress about the effect of gut microbiome on the formation process of calcium oxalate stone through gut-kidney axis
Sihao CHEN ; Min LEI ; Nanxi LI ; Xinguo HUANG ; Shiqi CHEN ; Wenhao HUANG ; Lingyue AN ; Shujue LI ; Wenqi WU
Chinese Journal of Urology 2022;43(9):713-716
Calcium oxalate (CaOx) stone is the main type, and its formation is closely related to the metabolism of oxalic acid and calcium. Gut Microbiome is normal microflora which settled in the human intestinal tract and plays an important role in regulating a variety of metabolism in the body. In the past, Oxalobacter formigenes in gut was a protective factor for the formation of CaOx stones. Recently, it has been found that the bacteria regulating oxalate metabolism were not limited to Oxalobacter formigenes. Gut Microbiome of CaOx stones formers is different from healthy people. It regulates the metabolism of oxalic acid in the body through the gut-kidney axis and affect the formation of CaOx stone. The purpose of this study is to describe the characteristics of intestinal flora in patients with CaOx stones, and to summarize its potential function in the formation of CaOx stones and its possible clinical application in the future.
5.Nuclear m
Chuan CHEN ; Wenqiang LIU ; Jiayin GUO ; Yuanyuan LIU ; Xuelian LIU ; Jun LIU ; Xiaoyang DOU ; Rongrong LE ; Yixin HUANG ; Chong LI ; Lingyue YANG ; Xiaochen KOU ; Yanhong ZHAO ; You WU ; Jiayu CHEN ; Hong WANG ; Bin SHEN ; Yawei GAO ; Shaorong GAO
Protein & Cell 2021;12(6):455-474
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6.Correction to: Nuclear m6A reader YTHDC1 regulates the scaffold function of LINE1 RNA in mouse ESCs and early embryos.
Chuan CHEN ; Wenqiang LIU ; Jiayin GUO ; Yuanyuan LIU ; Xuelian LIU ; Jun LIU ; Xiaoyang DOU ; Rongrong LE ; Yixin HUANG ; Chong LI ; Lingyue YANG ; Xiaochen KOU ; Yanhong ZHAO ; You WU ; Jiayu CHEN ; Hong WANG ; Bin SHEN ; Yawei GAO ; Shaorong GAO
Protein & Cell 2022;13(6):470-471