1.hsa-miR-1908 target genes prediction and bioinformatics analysis
Lei YANG ; Chenbo JI ; Chunmei SHI ; Ling CHEN ; Lingxia PANG ; Li XIA ; Xirong GUO ; Yuhui NI
Journal of Clinical Pediatrics 2013;(9):820-824
Objective To predict the biological process and signaling pathways in which hsa-miR-1908 might be in-volved by a series of bioinformatics analysis, so as to lay foundations and provide theoretical basis for the further studies of hsa-miR-1908 biological function in human preadipocytes. Methods The sequence of hsa-miR-1908 was acquired from miR-Base database, and target genes of hsa-miR-1908 were predicted by miRanda, and then the intersection of the results and the results of gene-chip as gene set were further analyzed by gene ontology and pathway enrichment. Results The hsa-miR-1908 had some conserved property among different species. The functions of the target genes were enriched in Wnt receptor signal-ing pathway through beta-catenin, cell cycle, cell apeptosis and other biological processes. The GnRH signaling, MAPK sig-naling, insulin signaling, cell cycle signal transduction pathways and signaling pathway in pancreatic cancer were signiifcantly enriched. Conclusions The target genes set of hsa-miR-1908 were enriched in multiple biological process which are related with the obesity. This study provides guidance for the further study in human preadipocytes.
2.Research progress on gene mutation of jak2.
Li LIU ; Wei LI ; Nian LIU ; Lei PANG ; Si-Xia FENG ; Ling-Ling ZHAO
Journal of Experimental Hematology 2009;17(6):1629-1632
Chronic myeloproliferative disease (CMPD) is a group of malignant blood disorders including polycythemia vera, essential thrombocythemia, primary myelofibrosis, chronic myeloid leukemia, and so on. CMPD is characterized by proliferation of one or several lineages in hematopoietic system. The pathogenesis of CMPD is not clear except chronic myeloid leukemia associated with the bcr/abl fusion gene. In recent years, more studies demonstrated that CMPD have a higher mutation rate of gene jak2. In this review, the association of jak2 gene mutation with clinical diagnosis, clinical feature and molecular target therapy in CMPD and other hematological disease were summarized.
Chronic Disease
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Humans
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Janus Kinase 2
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genetics
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Mutation
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Myelodysplastic-Myeloproliferative Diseases
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genetics
3.Application of WAIS-RC short forms and adult intelligence disability scale in mental impairment assessment.
Yan-Xia PANG ; Jian ZHANG ; Cheng-Long YANG ; Yong CANG ; Xue-Ling WANG
Journal of Forensic Medicine 2011;27(3):189-192
OBJECTIVE:
Study on the application of WAIS-RC short forms and adult intelligence disability scale in mental impairment assessment.
METHODS:
Mental impairment assessment cases between July 2009 and March 2011 in judicial appraisal institute of Taizhou University were collected. Assessment results obtained with the WAIS-RC short forms and adult intelligence disability scale were compared with the experts assessing conclusions and analyzed using SPSS 11.5 software.
RESULTS:
Assessment results with the two scales did not fully comply with the expert's conclusions, with reliability coefficient were 0.785 and 0.940 respectively, correlation coefficient were 0.850 and 0.922 respectively.
CONCLUSION
The intelligence assessment was influenced by many factors. When the appraised individuals had nerve dysfunction and mild intelligence disability or mental disorders, the two scales should be used together. When the appraised individuals had moderate intelligence disability or mental disorders, adult intelligence disability scale had advantage.
Accidents, Traffic
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Adolescent
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Adult
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Aged
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Aged, 80 and over
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Brain Injuries/complications*
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Disability Evaluation
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Expert Testimony
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Female
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Forensic Psychiatry
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Humans
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Intellectual Disability/psychology*
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Intelligence
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Male
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Mental Disorders/psychology*
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Middle Aged
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Reproducibility of Results
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Severity of Illness Index
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Wechsler Scales/statistics & numerical data*
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Young Adult
4.Changes of apelin and its receptor in lung tissue of rats with pulmonary hypertension induced by monocrotaline.
Qing WANG ; Gui-Qin WANG ; Ling-Xia PANG ; Feng XUE ; Xing-Yan CHEN ; Ran CHEN ; Xiao-Xia KONG ; Yong-Sheng GONG ; Xiao-Fang FAN
Chinese Journal of Applied Physiology 2013;29(2):101-105
OBJECTIVETo observe the change of apelin and its receptor (APJ) in the lung tissue of rats with pulmonary hypertension induced by monocrotaline and to explore its significance.
METHODSTwenty-five male SD rats were randomly divided into control group (n = 10) and monocrotaline group (n = 15). On the twenty-first day after the rats were intraperitoneally injected 60 mg/kg monocrotaline for monocrotaline group or equal volume vehicle for control group, the mean pulmonary artery pressure was measured by right heart catheterization. Histopathological study of lung tissue was done with hematoxylin-eosin (HE) and Masson's trichrome staining. The concentration of apelin in the plasma was measured by radioimmunoassay. The expressions of apelin/APJ proteins and genes in lung tissue were measured respectively by Western blot and reverse transcription polymerase chain reaction (RT-PCR).
RESULTSThe mean pulmonary arterial pressure, right ventricular hypertrophy, pulmonary vascular remodeling index, content of apelin protein in lung tissue of monocrotaline group were higher than those in control group. APJ protein and gene expression in monocrotaline group were significantly lower than those in control group (P < 0.01, P < 0.05), but apelin gene expression in the lung tissue between the two groups had no significant difference.
CONCLUSIONEndogenous apelin/APJ dysfunction may play an important role in the development of pulmonary hypertension induced by monocrotaline.
Animals ; Apelin ; Apelin Receptors ; Hypertension, Pulmonary ; chemically induced ; metabolism ; Intercellular Signaling Peptides and Proteins ; metabolism ; Lung ; metabolism ; Male ; Monocrotaline ; adverse effects ; Rats ; Rats, Sprague-Dawley ; Receptors, G-Protein-Coupled ; metabolism
5.Hepatitis E virus capsid protein production by high cell density culture of recombinant Escherichia coli.
Ru-Shi LIU ; Zhi-Qiang HE ; Shao-Wei LI ; Kun-Yu YANG ; Yang-Ling XIAN ; Shu-Qiang PANG ; Jun ZHANG ; Yi-Min LI ; Ning-Shao XIA
Chinese Journal of Biotechnology 2004;20(3):450-455
Production of Hepatitis E Virus capsid protein by high cell density culture in recombinant E. coli has been studied in 10L and 30L fermentors. The effects of different factors on growth and producing recombinant protein of E. coli have been studied by batch culture, such as different media, the ratio of phosphate and Magnesium sulfate. Comparison of fermentation performance for recombinant E. coli in different fed-methods culture has been investigated by fed-batch culture. The effects of inducing at different stages of growth and time of inducing on growth and producing recombinant protein, also obtained by fed-batch culture. At last, the solubility of inclusion body in different urea concentrations also has been obtained by fed-batch culture. The results show that the concentration of phosphate and Magnesium sulfate in the optimal media is 80mmol/L and 20mmol/L in batch culture respectively, that induction with 1.0mmol/L IPTG at mid log phase (about 45 OD at 600nm) is suitable for growth and recombinant protein expression, the cells were approaching stationary growth phase and the maximum cell OD at 600nm of 80 was achieved in 5h of fed-batch culture, and the expression level is 29.74%. The results also indicate that the solubility of inclusion body in 4mol/L urea solution induced at 37 degrees C reaches 14mg/mL, over 80% inclusion body was resolved. The culture process achieved in 10L fermentor could be successfully scaled up to 30L fenmentor with good reproducibility.
Bioreactors
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microbiology
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Colony Count, Microbial
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Escherichia coli
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genetics
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metabolism
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Hepatitis E virus
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genetics
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Nucleocapsid Proteins
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biosynthesis
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genetics
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Protein Engineering
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methods
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Recombinant Fusion Proteins
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biosynthesis
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genetics
6.Bacillus thuringiensis helper protein P20 affects the formation of Cry1Ab.
Mu-Jin TANG ; Mei-Jin YUAN ; Jian-Wu CHEN ; Yong-Xia SHI ; Shao-Ling ZENG ; Jian-Xiu YU ; Yi PANG
Chinese Journal of Biotechnology 2003;19(5):566-571
The Cry1Ab differs most significantly from the other related ICPs by its absence of a carboxyl terminus of 28 amino acids including four cysteines; consequently it is less stable. We report that the helper protein P20 plays a role in the expression and crystallization of Cry1Ab. Three Cry1Ab expression plasmids pT1B, pP1B, and pDP1B, were constructed based on the shuttle vector pHT3101. The vector pT1B does not contain the p20 gene, pP1B carries p20, and pDP1B contains p20 with cry1A(c) promoter. Transformants were obtained by electroporating the plasmids into Bacillus thuringiensis acrystalliferous mutant CryB. Western blot demonstrated that crylAb was expressed as a 130 kD protein in all the transformants, and some of the protein was partially degraded into a 60 kD peptide. Quantitative protein analysis indicated that the amount of the 130 kD protein varied in the transformants and was in the ratio of 1:1.4:1.5 for PT1B, pP1B and pDP1B respectively. For the 60 kD proteins, the ratio was 1:1.1:1.6. Microscopic examination revealed that the size of the typical pyramidal crystals in the three transformants was in the order of T1B < P1B < DP1B. Bioassay showed that T1B, P1B and DP1B were all toxic to the larvae of Helicoverpa armigera with similar LC50. This study suggested that P20 plays a role in the expression and crystallization of Cry1Ab.
Animals
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Bacillus thuringiensis
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genetics
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metabolism
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ultrastructure
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Bacterial Proteins
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genetics
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metabolism
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pharmacology
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Biological Assay
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methods
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Blotting, Western
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Electroporation
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Endotoxins
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genetics
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metabolism
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pharmacology
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Hemolysin Proteins
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genetics
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metabolism
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pharmacology
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Microscopy, Electron, Transmission
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Moths
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drug effects
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Promoter Regions, Genetic
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genetics
7.Comparison of Rhesus boxes in Hans and Uighurs.
Jiong-cai LAN ; Hua-you ZHOU ; Xu-hua BAI ; Gui-zhi PANG ; Xiao-zhu WANG ; Ling-jun CAI ; Qiong CAO ; Yin-ze ZHANG ; Rong XIA ; Quan-ke YANG
Chinese Journal of Medical Genetics 2005;22(5):580-582
OBJECTIVETo study the difference and similarity between Hans and Uighurs in regard to Rhesus box and its significance.
METHODSThe sequence specific primers of upstream, downstream and hybrid Rhesus boxes were designed on the basis of RHD gene sequence. The upstream, downstream and hybrid Rhesus boxes were determined by polymerase chain reaction-sequence specific primer(PCP-SSP) and mismatched PCR.
RESULTSThe percentage of RHD-/RHD-, RHD+/RHD- and RHD+/RHD+ genotypes ascertained in the unrelated Hans with RhD(-) were 61.40%, 34.21% and 4.39% respectively, while those in the unrelated Chinese Uighurs with RhD(-) were 94.44%, 2.78% and 2.78% respectively. Furthermore, all 6 cases of some other minorities were RHD-/RHD- types. The percentage of RHD-/RHD- and RHD+/RHD- genotypes ascertained in the unrelated Chinese Uighurs were significantly higher than those in Chinese Hans (P < 0.01), whereas no statistically significant difference in the percentage of RHD+/RDH+ genotype between the two groups was observed (P > 0.05).
CONCLUSIONThe Rh blood group of Uighurs in Xingjiang possesses both Oriental and Caucasian characteristics, which embodies a special ethnical aspect of the Chinese nation and is in accord with the anthropologic research results.
China ; Genetics, Population ; Genotype ; Humans ; Polymerase Chain Reaction ; Rh-Hr Blood-Group System ; genetics
8.Genetic diagnosis and follow up of a fetus with Emanuel syndrome.
Yanhui ZHAO ; Hong PANG ; Ming GAO ; Xiaojing FENG ; Yunping GUAN ; Hua ZHAO ; Dan TONG ; Jun HUA ; Xia CAO ; Shaosong HE ; Jesse LI-LING
Chinese Journal of Medical Genetics 2017;34(5):709-713
OBJECTIVETo carry out genetic analysis for a fetus with Dandy-Walker malformation and provide prenatal diagnosis for its parents during the subsequent pregnancy.
METHODSRoutine G-banding was carried out to analyze the karyotype of the fetus and its parents, and next-generation sequencing (NGS) and fluorescence in situ hybridization (FISH) were used to verify the result.
RESULTSThe father showed a normal karyotype, while the mother was found to carry a balanced t(11; 22) (q23; q11) translocation. NGS and FISH analysis verified that the supernumerary marker chromosome carried by the fetus was der(22) t(11; 22) (q23;q11). The fetus was diagnosed with Emanuel syndrome. During the next pregnancy, the fetus was found to carry the same balanced translocation as its mother. After genetic counseling, the couple decided to continue with the pregnancy, and eventually delivered a healthy baby.
CONCLUSIONA fetal case of Emanuel syndrome has been identified. The derivative der(22) t(11; 22)(q23; q11) chromosome probably underlies the Dandy-Walker malformation in the fetus. Combined cytogenetic and molecular analyses can attain a more precise diagnosis for fetal abnormalities detected by ultrasonography.
Adult ; Chromosome Disorders ; diagnosis ; genetics ; Chromosomes, Human, Pair 11 ; Chromosomes, Human, Pair 22 ; Cleft Palate ; diagnosis ; genetics ; Female ; Follow-Up Studies ; Heart Defects, Congenital ; diagnosis ; genetics ; Humans ; Intellectual Disability ; diagnosis ; genetics ; Muscle Hypotonia ; diagnosis ; genetics ; Pregnancy ; Prenatal Diagnosis ; Translocation, Genetic
9.TRAF6 polymorphisms not associated with the susceptibility to and severity of sepsis in a Chinese population
Yu FANG ; Lu ZHANG ; Gang-Qiao ZHOU ; Zhi-Fu WANG ; Kai FENG ; Zhi-Yi LOU ; Wei PANG ; Lei LI ; Yan LING ; Yu-Xia LI ; Bao-Chi LIU
World Journal of Emergency Medicine 2010;1(3):169-175
BACKGROUND: The tumor necrosis factor recepter associated factor (TRAF) 6 is an important intracellular adapter protein that plays a pivotal role in activating multiple inflammatory and immune related processes induced by cytokines. TRAF6 represents a strong candidate susceptibility factor for sepsis. We investigated whether polymorphisms at the TRAF6 gene are associated with the susceptibility to and severity of sepsis. METHODS: A hospital-based case-control study was conducted with 255 patients with sepsis and 260 controls who were recruited from Zhengzhou, China. Haplotype tagging single nucleotide polymorphisms (htSNPs) were selected from the HapMap database and genotyped using the SNPstream genotyping platform. The associations with the susceptibility and disease severity of sepsis were estimated by logistic regression, and adjusted for age, sex, smoking, drinking, chronic diseases status, APACHEII score and critical illness status. RESULTS: A total of 13 TRAF6 SNPs were tagged by 7 htSNPs. Five htSNPs (rs5030490, rs5030411, rs5030416, rs5030445 and rs3740961) were genotyped in the case control study. Genotype frequencies of the htSNPs were conformed to the Hardy-Weinberg equilibrium in both patients and controls. No significant association was found between the 5 htSNPs and the susceptibility to and severity of sepsis. Compared with the main haplotype -11120A/-10688T/-9423A/805G/12967G, no certain haplotype was associated with the significantly susceptibility to or severity of sepsis. CONCLUSION: TRAF6 gene polymorphisms might not play a major role in mediating the susceptibility to and severity of sepsis in the Chinese population. A larger population-based case-control study is warranted.
10.Immunomagnetic Nanosphere-based Strategy for Rapid, Efficient and Accurate Detection of Lymphnode Metastatic Carcinoma Cells
Yan Xu MA ; Hui Yin QIN ; Bo Chu QI ; Ling Ling WU ; Ling Zhi ZHANG ; Shun He XIA ; Wen Dai PANG
Chinese Journal of Analytical Chemistry 2017;45(12):1874-1881
A strategy based on immunomagnetic nanospheres ( IMNs ) for rapid, efficient and accurate detection of lymphnode metastasis carcinoma cells ( LNMCCs ) was developed in this study. First, IMNs processing magnetism and biological targeting were fabricated by the approach developed by our group previously. Then, LNMCCs in lymph node fine needle aspiration ( LNFNA) specimens were separated and enriched by the immunomagnetic isolation using IMNs. At last, the captured cells were identified with Wright's staining and immunocytochemistry ( ICC) . The separation and enrichment of LNMCCs with immunomagnetic isolation could reduce the background interference of LNFNA specimens effectively; the identification with Wright ' s staining and ICC offered more reliable information for accurate diagnosis, so the sensitivity, specificity and overall diagnostic accuracy had an obvious improvement compared with the conventional cytologic diagnosis. Besides, the simple and rapid incubation of LNFNA specimens with IMNs needed just 5 min, so the cytomorphology of captured LNMCCs could be intactly retained, which enabled to provide important basis for classifying lymphnode metastasis carcinoma ( LNMC ) and the subsequent pathological study. Moreover, the specific capture of epithelial carcinoma cells in LNFNA specimens with IMNs could make a definite diagnosis of the captured cells as LNMCCs, thus realizing the differentiated diagnosis of LNMC and malignant lymphoma. Additionally, this strategy exhibited successful LNMCCs detection in LNFNA specimens from 110 patients and had higher sensitivity ( 98 . 0%) , specificity ( 100 . 0%) , and overall diagnostic accuracy (98. 2%) than the conventional cytologic diagnosis. Therefore, it was a new attempt to use IMNs for detection of LNMCCs in LNFNA specimens from LNMC patients, and offered new ideas for LNMC diagnosis and study.