1. Study on virulence related sites based on human enterovirus A71 genome
Jie LI ; Yiwei DU ; Da HUO ; Yang YANG ; Zhichao LIANG ; Lei JIA ; Lijuan CHEN ; Quanyi WANG
Chinese Journal of Experimental and Clinical Virology 2018;32(3):318-322
Objective:
To explore the virulence related risk factors based on the enterovirus A71 (EV-A71) genome.
Methods:
The pairwise distance of each section of gene between mild and fatal cases was analyzed. The ⅴ domain of 5′UTR from mild and fatal cases in this study were constructed. Amino acid sequences of EV-A71 were analyzed to find the potential virulence regions which were statistically different between fatal and mild cases.
Results:
The two EV-A71 genome sequences in this study belonged to C4a genotype with the genomic homology of 96.2%-97.5%. The nucleotides in the ⅴ domains of the 5 ′UTR of EV-A71 from mild and fatal cases were the same. Each gene of EV-A71 from 31 mild cases and 30 fatal cases shared high homology. A total of four potential virulence sites (2 A: R68 M、2C: K41R、3 A: T/V47 A and 3C: I158 V) which were significantly different between mild cases and fatal cases were obtained.
Conclusions
The four sites in the unstructured protein coding region might be related with the virulence of EV-A71.
2.A study of anatomical location of the low tibial tunnel in posterior cruciate ligament reconstruction based on CT images
Yuanjun TENG ; Zunlin WANG ; Jun YANG ; Sijie CHEN ; Nian TAN ; Sitong HAN ; Lijuan DA ; Laiwei GUO ; Xiangdong YUN ; Yayi XIA
Chinese Journal of Orthopaedic Trauma 2022;24(11):992-997
Objective:To measure the anatomical parameters of the simulated low tibial tunnel of posterior cruciate ligament (PCL) based on knee CT images so as to provide clinical reference for accurate location of the tunnel.Methods:The CT images of 201 healthy knee joints collected at Department of Orthopedics, The Second Hospital of Lanzhou University from June 2016 to September 2021 were used for simulation of the PCL low tibial tunnel. The anatomical parameters of the tibial tunnel were measured using the RadiAnt DICOM Viewer. The primary measures included the angle between tibial plateau and tibial tunnel (ATPT) and the perpendicular distances from the tibial tunnel entrance and exit point to the tibial plateau (L1 and L2). The secondary measures included the angle between tibial plateau and posterior slope (PSA), the angle between tibial anatomical axis and central line of tibial tunnel (ATAA), the angle between posterior tibial slope line and the central line of tibial tunnel (APST), the anterior and posterior diameter of tibial plateau (APD), the length of posterior tibial slope (LPTS), and the length of tibial tunnel (LTT). The measurement results were analyzed according to the body height (divided into 3 groups: a 1.00 to 1.60 m group, a 1.61 to 1.70 m group, and a ≥1.71 m group) and gender using the software IBM SPSS 26.Results:The primary measures: ATPT was 37.0°±4.5°, and L1 and L2 were respectively (57.8±7.4) mm and (34.5±3.3) mm. The secondary measures: PSA 128.1°±5.4°, ATAA 52.7°±4.1°, APST 89.1°±5.9°, APD was (32.9±2.6) mm, LPTS (20.5±2.4) mm, and LTT (40.9±5.7) mm. After grouping by gender, there was no significant difference in PSA between men and women ( P>0.05) while there were significant differences in the other indexes between men and women ( P<0.05). After grouping by body height, there was no significant difference in ATPT, PSA, APST or ATAA between the 3 groups (1.00 to 1.60 m group, 1.61 to 1.70 m group and ≥1.71 m group) ( P>0.05) while there were significant differences in L1, L2, APD, LPTS and LTT between the 3 groups ( P<0.05). Conclusions:Based on the knee CT images, the primary measures of PCL low tibial tunnel are as follows: the angle between tibial plateau and tibial tunnel is 37.0°±4.5°, and the perpendicular distances from the tibial tunnel entrance and exit point to the tibial plateau are (57.8±7.4) mm and (34.5±3.3) mm, respectively. Gender and body height are the important factors influencing the above measurement outcomes.
3.Investigation of rotavirus contamination in commercial oysters in Beijing
Zhiyong GAO ; Hanqiu YAN ; Baiwei LIU ; Da HUO ; Dandi LI ; Haikun QIAN ; Lijuan CHEN ; Quanyi WANG
Chinese Journal of Experimental and Clinical Virology 2016;(1):41-44
Objective To investigate the rotavirus contamination in commercial oysters in Beijing. Methods Between February 2014 and March 2015, a total of 280 oysters were collected in a large aquatic market in Beijing, and 5 oysters per stall were collected and classified as one sample.The samples were processed using three kinds of methods:direct treatment, PEG ( polyethylene glycol) 8 000 precipitation and proteinase K digestion-PEG 8 000 precipitation.Group A rotaviruses were detected by real time RT-PCR, and G/P genotyping was performed using the semi-nested RT-PCR.The VP7 and VP4 genes of positive samples were amplified, sequenced, and the phylogenetic tree was constructed using the maximum likelihood method with MEGA software ( version 6.06 ) .Results The detection rates of group A rotaviruses of three methods (direct treatment, PEG 8 000 precipitation and proteinase K digestion-PEG 8 000 precipitation) were 3.57%(2/56), 7.14%(4/56) and 5.38% (3/56), respectively.Rotaviruses were detected in 8 oysters samples ( 14.29%) , which were collected during autumn and winter . The G/P genotype combination included G9/P[8] (2 strains) and G9/P[N] (6 strains).The VP7 genes of 3 strains and the VP4 gene of one strain were sequenced successfully, and the phylogenetic analyses demonstrated that these strains had the highest similarity to those G9/P[8] strains prevailing in recent years in China.Conclusion Group A rotaviruses were detected in some commercial oysters during autumn and winter in Beijing, indicating a risk of foodborne illness.
4.Can we early diagnose metabolic syndrome using brachial-ankle pulse wave velocity in community population?
Xin LI ; Liang ZHENG ; Juanli WU ; Yunsheng MA ; Munakata MASANORI ; Jessica OLESKI ; Lijuan ZHANG ; Da WO ; Jingsong WANG ; Qiaoyu JIANG ; Liling ZOU ; Xuebo LIU ; Jue LI
Chinese Medical Journal 2014;127(17):3116-3120
BACKGROUNDThe prevalence of metabolic syndrome (MetS) increased recently and there was still not a screening index to predict MetS. The aim of this study was to estimate whether brachial-ankle pulse wave velocity (baPWV), a novel marker for systemic arterial stiffness, could predict MetS in Chinese community population.
METHODSA total of 2 191 participants were recruited and underwent medical examination including 1 455 men and 756 women from June 2011 to January 2012. MetS was diagnosed according to the criteria of the International Diabetes Federation (IDF). Multiple Logistic regressions were conducted to explore the risk factors of MetS. Receiver operating characteristic (ROC) curve was performed to estimate the ideal diagnostic cutoff point of baPWV to predict MetS.
RESULTSThe mean age was (45.35±8.27) years old. In multiple Logistic regression analysis, the gender, baPWV and smoking status were risk factors to MetS after adjusting age, gender, baPWV, walk time and sleeping time. The prevalence of MetS was 17.48% in 30-year age population in Shanghai. There were significant differences (χ(2) = 96.46, P < 0.05) between male and female participants on MetS prevalence. According to the ROC analyses, the ideal cutoff point of baPWV was 1 358.50 cm/s (AUC = 60.20%) to predict MetS among male group and 1 350.00 cm/s (AUC = 70.90%) among female group.
CONCLUSIONBaPWV may be considered as a screening marker to predict MetS in community Chinese population and the diagnostic value of 1 350.00 cm/s was more significant for the female group.
Adult ; Ankle Brachial Index ; methods ; Female ; Humans ; Logistic Models ; Male ; Metabolic Syndrome ; diagnosis ; Middle Aged ; ROC Curve