2.Present status of the molecular genetics in epidermolytic palmoplantar keratoderma.
Xian-ning ZHANG ; Wei MAO ; Xin-hui HE ; Zheng LAI
Chinese Journal of Medical Genetics 2004;21(4):372-375
In this article we reviewed the current researches on the molecular basis of epidermolytic palmoplantar keratoderma (EPPK) and the structure and function of the keratins with mutations that can cause inherited keratin disorders. Also summarized are seventeen mutations of keratin 9 in EPPK in different ethnic populations.
Humans
;
Keratin-9
;
genetics
;
physiology
;
Keratoderma, Palmoplantar, Epidermolytic
;
genetics
;
pathology
;
physiopathology
;
Mutation
3.Mutation analysis of a Uighur family with epidermolytic palmoplantar keratoderma.
Xiaohui TANG ; Xiaojing KANG ; Miao SUN ; Nuer DILI ; Yuhong HE ; Xiujuan WU ; Jianyong LIU ; Weidong WU ; Xiongming PU
Chinese Journal of Medical Genetics 2009;26(6):615-619
OBJECTIVETo map and identify the disease gene for the epidermolytic palmoplantar keratoderma (EPPK) in a Uighur family of China.
METHODSBlood samples were collected and genomic DNA was extracted from 48 members of the Xinjiang Uighur family. Six microsatellite repeat sequences on chromosome region 17q12-q21 and 12q13 were selected based on the two known candidate genes KRT9 and KRT1. Two-point linkage analysis and haplotype analysis were performed. Exons and their flanking intronic sequence of the KRT9 gene were amplified by polymerase chain reaction (PCR) and sequenced.
RESULTSData from the marker D17S1787 suggested linkage and yielded a Lod score of 8.65 at theta=0 by using MLINK software. Genotypes and haplotypes were acquired. The disease gene of the EPPK family is located between markers 17/TG/36620115 and D17S846. Chromosome 12q13 region was excluded with the negative Lod score obtained in marker D12S96 (Lod=-infinity at theta=0). No pathogenic mutation was detected in the KRT9 gene.
CONCLUSIONThe disease gene of the EPPK family is located on chromosome region 17q21.2. The keratin 9 gene might not be the disease gene.
China ; Chromosomes, Human, Pair 17 ; genetics ; Female ; Humans ; Keratin-1 ; genetics ; Keratin-9 ; genetics ; Keratoderma, Palmoplantar, Epidermolytic ; ethnology ; genetics ; Male ; Microsatellite Repeats ; Mutation ; Pedigree
4.The Proteomics Approaches to Find Bio-Markers in Serum of Locally Advanced Breast Cancer Patients.
Jin Woo RYU ; Hyung Jee KIM ; Dong Hee KIM ; In Ho SONG ; Ji Young PARK ; Cheol Ho HWANG ; Sung Yong KIM
Journal of Breast Cancer 2006;9(1):25-30
PURPOSE: Breast cancer continues to be a major cause of death, despite the advances in the study of many prognostic factors. Although many prognostic factors have been studied, none reliably predict the response to treatment. This uncertainty in the prognostic factors could be overcome by defining the changes, occurring in patients at either the gene or protein level. Herein, attempts were made to examine the protein repertoire of patients using Proteomics. MATERIALS AND METHODS: Using conventional Proteomics, the high resolution 2-D electrophoresis followed by computational image analysis(Melanie program) and protein identification with mass spectrometry (MALDI-TOF), the serum of locally advanced breast cancer patients (stage III) was analyzed, and attempts were made to define the differences between recurred (or metastasis) patients ,and disease free patients of more than 4-years duration after surgery. RESULTS: In the 2-D electrophoresis of serum, about 1,000 spots were gained in each gel, with the up and down expressed protein spots compared to the normal control protein map. Six of seven patients had Cytokeratin 9 in their peripheral blood. In the serum of recurred patients (one of two), no Haptoglobin-related proteins were detected. All five un-recurred patients had normal or elevated levl of serum Haptoglobin-related proteins. CONCLUSIONS: The reduction of Haptoglobin-related proteins indicated the humoral immuno-depression in recurred patients. These findings may suggest the continuation of proper humoral immunity was important in the prevention of cancer recurrences or metastasis after surgery, especially in locally advanced breast cancer patients, which may suggests the value of immunotherapy in breast cancer patients to obtain good results.
Breast Neoplasms*
;
Breast*
;
Cause of Death
;
Electrophoresis
;
Humans
;
Immunity, Humoral
;
Immunotherapy
;
Keratin-9
;
Mass Spectrometry
;
Neoplasm Metastasis
;
Proteomics*
;
Recurrence
;
Uncertainty
5.The Proteomics Approaches to Find Bio-Markers in Serum of Locally Advanced Breast Cancer Patients.
Jin Woo RYU ; Hyung Jee KIM ; Dong Hee KIM ; In Ho SONG ; Ji Young PARK ; Cheol Ho HWANG ; Sung Yong KIM
Journal of Breast Cancer 2006;9(1):25-30
PURPOSE: Breast cancer continues to be a major cause of death, despite the advances in the study of many prognostic factors. Although many prognostic factors have been studied, none reliably predict the response to treatment. This uncertainty in the prognostic factors could be overcome by defining the changes, occurring in patients at either the gene or protein level. Herein, attempts were made to examine the protein repertoire of patients using Proteomics. MATERIALS AND METHODS: Using conventional Proteomics, the high resolution 2-D electrophoresis followed by computational image analysis(Melanie program) and protein identification with mass spectrometry (MALDI-TOF), the serum of locally advanced breast cancer patients (stage III) was analyzed, and attempts were made to define the differences between recurred (or metastasis) patients ,and disease free patients of more than 4-years duration after surgery. RESULTS: In the 2-D electrophoresis of serum, about 1,000 spots were gained in each gel, with the up and down expressed protein spots compared to the normal control protein map. Six of seven patients had Cytokeratin 9 in their peripheral blood. In the serum of recurred patients (one of two), no Haptoglobin-related proteins were detected. All five un-recurred patients had normal or elevated levl of serum Haptoglobin-related proteins. CONCLUSIONS: The reduction of Haptoglobin-related proteins indicated the humoral immuno-depression in recurred patients. These findings may suggest the continuation of proper humoral immunity was important in the prevention of cancer recurrences or metastasis after surgery, especially in locally advanced breast cancer patients, which may suggests the value of immunotherapy in breast cancer patients to obtain good results.
Breast Neoplasms*
;
Breast*
;
Cause of Death
;
Electrophoresis
;
Humans
;
Immunity, Humoral
;
Immunotherapy
;
Keratin-9
;
Mass Spectrometry
;
Neoplasm Metastasis
;
Proteomics*
;
Recurrence
;
Uncertainty
6.PCR products with heterozygous mutations containing two types of heteroduplexes.
Xian-ning ZHANG ; Xin-hui HE ; Ji-cheng LI
Journal of Zhejiang University. Medical sciences 2005;34(5):417-420
OBJECTIVETo confirm that PCR products with heterozygous mutations contain not only wide-type and mutant homoduplexes, but also two types of heteroduplexes.
METHODSAn insertion-deletion mutation in the exon 1 of KRT9 gene (497delAinsGGCT), which caused Chinese epidermolytic palmoplantar keratoderma (EPPK) was investigated by polymerase chain reaction (PCR), polyacrylamide gel electrophoresis (PAGE) and denaturing high-performance liquid chromatography(DHPLC).
RESULTSTwo heteroduplexes and two homoduplexes in the PCR product from the heterozygous mutation of the exon 1 of KRT9 (497delAinsGGCT) were detected.
CONCLUSIONPCR products from KRT9 gene with heterozygous mutations contain two types of heteroduplexes. It is without the need to perform heating and cooling PCR products obtained from heterozygous mutations in advance before the mutation screening steps such as denaturing gradient gel electrophoresis (DGGE), temperature gradient gel electrophoresis (TGGE), conformation-sensitive gel electrophoresis (CSGE), DHPLC and heteroduplex analysis (HA), etc.
Base Pair Mismatch ; Chromatography, High Pressure Liquid ; DNA Mutational Analysis ; Electrophoresis, Polyacrylamide Gel ; Heteroduplex Analysis ; Heterozygote ; Humans ; Keratin-9 ; Keratins ; genetics ; Mutation ; Nucleic Acid Heteroduplexes ; Polymerase Chain Reaction
7.Mutation analysis of keratin 9 gene in a family with epidermolytic palmoplantar keratoderma.
Yan-li LI ; Na-na LI ; Yan-ping WANG ; Ming-rong LI ; Li DAI ; Ying DENG ; Zhen LIU ; De-zhi MU ; Jun ZHU
Chinese Journal of Medical Genetics 2012;29(3):280-283
OBJECTIVETo analyze potential mutation of keration 9 gene (KRT9) in a Chinese family affected with epidermolytic palmoplantar keratoderma (EPPK) and to correlate genotype with the phenotype.
METHODSGenomic DNA was extracted from peripheral blood samples of 12 patients and 13 healthy individuals from the family and 100 unrelated individuals. Polymerase chain reaction (PCR) was used to amplify exons 1 and 6 of KRT9 gene. PCR products were sequenced bidirectionally in order to identify potential mutations.
RESULTSA heterozygous transversional mutation, 488G→A, was identified in exon 1 of KRT9 gene in all patients, which has resulted in substitution of a glutamine residue for arginine acid at position 163 (R163Q) of the KRT9 protein. The same mutation was not found in the 13 healthy members from the family and 100 unrelated individuals.
CONCLUSIONThe 488G→A mutation of KRT9 gene is probably the cause of EPPK in this Chinese family.
Adult ; Base Sequence ; DNA Mutational Analysis ; methods ; Female ; Humans ; Keratin-9 ; genetics ; Keratoderma, Palmoplantar, Epidermolytic ; genetics ; Male ; Molecular Sequence Data ; Mutation
8.Mutation analysis of the keratin 9 gene in a pedigree with diffuse epidermolytic plamoplantar keratoderma.
Ming LI ; Guo-long ZHANG ; Jian-xin ZHAI ; Ling WEI ; Xiao-hong ZHU ; Xun-yi DAI ; Li-jia YANG
Chinese Journal of Medical Genetics 2008;25(4):387-389
OBJECTIVETo analyze the mutation of the keratin 9 gene (KRT9) in a pedigree with epidermolytic plamoplantar keratoderma (EPPK).
METHODSBlood samples were obtained from 4 affected and 3 normal individuals in this family. Mutation screening was carried out by polymerase chain reaction (PCR) and direct DNA sequencing.
RESULTSA heterozygous nucleotide C to T transition at position 484 in exon 1 of the KRT9 gene was detected in the 3 affected in this family, but was not found in normal individuals in the family and 100 unrelated individuals.
CONCLUSIONA missense mutation (484 C to T) in the KRT9 gene has been detected in this EPPK family, which is probably one of the molecular bases of the pathogenesis of the disease.
Adult ; Child, Preschool ; DNA Mutational Analysis ; Exons ; genetics ; Female ; Humans ; Keratin-9 ; genetics ; Keratoderma, Palmoplantar ; genetics ; Male ; Molecular Diagnostic Techniques ; Mutation ; Mutation, Missense ; Pedigree
9.Diagnosis and differential diagnosis of intrahepatic bile duct lesions.
Chinese Journal of Pathology 2011;40(1):56-59
Adenocarcinoma
;
metabolism
;
pathology
;
Adenoma
;
pathology
;
Bile Duct Neoplasms
;
metabolism
;
pathology
;
Bile Ducts, Intrahepatic
;
CA-19-9 Antigen
;
metabolism
;
Cadherins
;
metabolism
;
Caroli Disease
;
pathology
;
Cholangiocarcinoma
;
pathology
;
Cystadenocarcinoma
;
metabolism
;
pathology
;
Cystadenoma
;
metabolism
;
pathology
;
Cysts
;
pathology
;
Diagnosis, Differential
;
Hamartoma
;
pathology
;
Humans
;
Keratin-19
;
metabolism
;
Keratin-20
;
metabolism
;
Keratin-7
;
metabolism
;
Liver Diseases
;
pathology
10.DNA - based Prenatal Diagnosis of Epidermolytic Palmoplantar Keratoderma.
Soon Ha YANG ; Cheong Rae ROH ; Je Ho LEE ; Jae Hyun CHUNG ; Zong Soo MOON ; Jun Mo YANG ; Syng Wook KIM
Korean Journal of Obstetrics and Gynecology 1999;42(1):19-24
OBJECTIVE: The purpose of this investigation was to establish the prenatal diagnosis for identifying the risk for epidermolytic palmoplantar keratoderma(EPPK) of a fetus by sequence analysis of fetal genomic DNA from chorionic villi. METHODS: Chorionic villus sampling under transvaginal sonography at 12 weeks of gestation from a woman at risk for a child in a EPPK-affected family was perfomed. Polymerase chain reaction amplification of specific allele (PASA) assay was carried out for the detection of mutation(R162W in keratin 9 [K9] gene) previously identified in this family. Direct DNA sequencing analysis of K9 gene was accomplished to confirm the mutation. RESULTS: We had found the point mutation, R162W of K9 gene, in affected family members and confirmed by PASA assay. Affected family members were shown to have PCR products reactive with both the mutant and wildtype specific primers. Because we could not find any expected products after PASA assay with the primers la(+)/KSmt(-) of the fetal DNA, we predicted that the fetus did not inherited the mutant allele and that the fetus could be unaffected. After PASA assay, we analyzed DNA sequences of two family members to confirm the mutation. A C-to-T substitution at bp 545 was detected in the father, instead the fetus did not have any mutant band at that base pair. CONCLUSION: The PASA assay and direct DNA sequencing analysis of K9 gene through chorionic villi sampling and extraction of genomic DNA had validity to early prenatal diagnosis whether fetus was affected in EPPK or not.
Alleles
;
Base Pairing
;
Base Sequence
;
Child
;
Chorionic Villi
;
Chorionic Villi Sampling
;
DNA*
;
Fathers
;
Female
;
Fetus
;
Humans
;
Keratin-9
;
Keratoderma, Palmoplantar, Epidermolytic*
;
Point Mutation
;
Polymerase Chain Reaction
;
Pregnancy
;
Prenatal Diagnosis*
;
Sequence Analysis
;
Sequence Analysis, DNA