1.Intelligent question answering system for traditional Chinese medicine based on BSG deep learning model:taking prescription and Chinese materia medica as examples
Ran LI ; Gao REN ; Junfeng YAN ; Beiji ZOU ; Qingping LIU
Digital Chinese Medicine 2024;7(1):47-55
Objective To construct a traditional Chinese medicine(TCM)knowledge base using knowl-edge graph based on deep learning methods,and to explore the application of joint models in intelligent question answering systems for TCM. Methods Textbooks Prescriptions of Chinese Materia Medica and Chinese Materia Medicawere applied to construct a comprehensive knowledge graph serving as the founda-tion for the intelligent question answering system.In the study,a BERT+Slot-Gated(BSG)deep learning model was applied for the identification of TCM entities and question inten-tions presented by users in their questions.Answers retrieved from the knowledge graph based on the identified entities and intentions were then returned to the user.The Flask framework and BSG model were utilized to develop the intelligent question answering sys-tem of TCM. Results A TCM knowledge map encompassing 3 149 entities and 6 891 relational triples based on the prescriptions and Chinese materia medica was drawn.In the question answer-ing test assisted by a question corpus,the F1 value for recognizing entities when answering 20 types of TCM questions was 0.996 9,and the accuracy rate for identifying intentions was 99.75%.This indicates that the system is both feasible and practical.Users can interact with the system through the WeChat Official Account platform. Conclusion The BSG model proposed in this paper achieved good results in experiments by increasing the vector dimension,indicating the effectiveness of the joint model method and providing new research ideas for the implementation of intelligent question answering sys-tems in TCM.
2.Study on Inflammatory Immune Mechanism of Lactoferrin in the Treatment of Periodontitis
XU Junfeng ; XU Wanjun ; DONG Yanrong ; DENG Zuyue ; JIANG Xia ; YUAN Ying ; FANG Jianhong ; WAN Yue ; REN Yanyun
Chinese Journal of Modern Applied Pharmacy 2023;40(15):2086-2092
OBJECTIVE To study the anti-inflammatory immune response effects of lactoferrin in the treatment of periodontitis and its mechanism. METHODS One hundred SD rats were randomly divided into blank control group, model group, lactoferrin administration group low, medium, high dose group(1, 2, 3 g·kg-1), metronidazole positive control group (0.02 g·kg-1), PDTC group(200 mg·kg-1), lactoferrin+PDTC group(2 g·kg-1, 200 mg·kg-1), MCC950 group(1 mg·kg-1) and lactoferrin+MCC950 group(2 g·kg-1, 1 mg·kg-1), 10 rats in each group. Silk thread ligation combined with 10% sucrose drinking water was used to establish the model, and then the drug was administered orally once a day. The blank control group and the model group were administered orally with 0.9% NaCl. The rats in each group were sacrificed after one month of continuous administration. The contents of IL-1b, IL-8 and IL-10 were detected by ELISA kit, and the expressions of TLR2-NF-κB pathway and NLRP3 inflammasome related proteins were detected by Western blotting. HE staining was used to observe the pathological changes of the periodontal tissues of the rats in each group. RESULTS Compared with the model group, the symptoms of periodontitis in each dose group of lactoferrin were significantly improved. HE staining showed that the infiltration of inflammatory cells was reduced, and the proliferation of fibroblasts was active. The protein expressions of TLR2, NF-κB, NLRP3, Caspase-1 p20 and GSDMD-N decreased, the content of pro-inflammatory factor IL-8 and IL-1b decreased, and the content of anti-inflammatory factor IL-10 increased. CONCLUSION Lactoferrin may play a role in the regulation of inflammatory immune response in the treatment of periodontitis by down-regulating the protein expression of TLR2-NF-κB-NLRP3 pathway, reducing the initiation of inflammatory response and the release of inflammatory factors, so as to achieve the purpose of anti-inflammatory.
3.Review and comment rules of national key monitoring drug prescriptions (medical orders)
Liu YANG ; Yong HAN ; Qing SHEN ; Yimeng ZHOU ; Wei REN ; Junfeng YAN ; Rongsheng TONG
China Pharmacy 2023;34(21):2561-2577
In order to standardize the review and comment of national key monitoring drug prescriptions (medical orders) by medical institutions at all levels, the Sichuan Academy of Medical Sciences·Sichuan Provincial People’s Hospital took the lead in compiling the Review and Comment Rules of National Key Monitoring Drugs prescriptions (Medical Orders) herein after referred to as the Rules in accordance with the Second Batch of National Key Monitoring Rational Drug Use List (hereinafter referred to as the List) issued by the National Health Commission confirmed in Jan. 13, 2023. According to the laws and drug instructions issued by the national drug regulatory department, clinical guidelines and expert consensus, combined with the actual situation of patients (including age, body weight, liver and kidney function), the writing group classified the common and unreasonable drug use problems for 30 kinds of drugs included in the List and develop the review and comment details. After two rounds of Delphi method questionnaire research and experts’ online meetings, and reviewed by the steering committee, the final Rules was formed. The Rules aim to provide reference for the evaluation of the rational use of drugs included in the List by medical institutions, so as to realize the standardized management of key monitoring drugs, promote the rational drug use in medical institutions, and ensure the safety of drug use for patients.
4.Prognostic factors of intraductal papillary mucinous neoplasm of the bile duct: analysis based on SEER database
Chao REN ; Junfeng CHENG ; Cang LI ; Shian YU ; Xuemin LI
Chinese Journal of Hepatobiliary Surgery 2023;29(8):584-588
Objective:To explore prognostic factors of intraductal papillary mucinous neoplasm of the bile duct (IPMN-B) patients.Methods:Clinical data on 227 patients with IPMN-B between 2004 and 2015 were retrospectively collected from the surveillance, epidemiology, and end results (SEER) database. There were 126 male and 101 female patients with the age at diagnosis of 69(58, 77) years old. IPMN-B patients were divided into two groups based on whether surgical treatment was performed. There were 129 patients in the surgery group and 98 patients in the non-surgery group. The survival analyses were assessed by Kaplan-Meier analyses and log-rank test was used to compared survival rate. The univariate and multivariate Cox analyses were applied to find independent prognostic factors of the survival in IPMN-B patients.Results:The tumor size of 227 IPMN-B patients from the SEER database was 25(18.5, 45.0) mm. The differences of tumor size, grade of defferentiation, American Joint Committee on Cancer (AJCC) stage, T stage, M stage chemotherapy were statistically significant respectively in surgery group and non-surgery group (all P<0.05). The median overall survival time (OS) of patients with IPMN-B was 14 months and the overall 1-year survival was 53.4%. The median overall survival time of IPMN-B patients in surgery group was 27 months, which was better than 5 months of patients in non-surgery group, and the difference was statistically significant ( P<0.001). Univariate Cox analysis found AJCC stage, T stage, N stage, M stage and surgery were prognostic factors in patients with IPMN-B. Multivariate Cox analysis showed that M1 stage ( HR=2.125, 95% CI: 1.472-3.066, P<0.001) was independent risk factor of prognosis while surgery ( HR=2.983, 95% CI: 2.106-4.224, P<0.001) was independent protective factor of prognosis. Conclusion:The AJCC staging system is an important predictor for evaluating the prognosis of IPMN-B patients. Surgery could significantly improve the prognosis of patients with IPMN-B.
5.Single-cell RNA Sequencing Reveals Thoracolumbar Vertebra Heterogeneity and Rib-genesis in Pigs.
Jianbo LI ; Ligang WANG ; Dawei YU ; Junfeng HAO ; Longchao ZHANG ; Adeniyi C ADEOLA ; Bingyu MAO ; Yun GAO ; Shifang WU ; Chunling ZHU ; Yongqing ZHANG ; Jilong REN ; Changgai MU ; David M IRWIN ; Lixian WANG ; Tang HAI ; Haibing XIE ; Yaping ZHANG
Genomics, Proteomics & Bioinformatics 2021;19(3):423-436
Development of thoracolumbar vertebra (TLV) and rib primordium (RP) is a common evolutionary feature across vertebrates, although whole-organism analysis of the expression dynamics of TLV- and RP-related genes has been lacking. Here, we investigated the single-cell transcriptome landscape of thoracic vertebra (TV), lumbar vertebra (LV), and RP cells from a pig embryo at 27 days post-fertilization (dpf) and identified six cell types with distinct gene expression signatures. In-depth dissection of the gene expression dynamics and RNA velocity revealed a coupled process of osteogenesis and angiogenesis during TLV and RP development. Further analysis of cell type-specific and strand-specific expression uncovered the extremely high level of HOXA10 3'-UTR sequence specific to osteoblasts of LV cells, which may function as anti-HOXA10-antisense by counteracting the HOXA10-antisense effect to determine TLV transition. Thus, this work provides a valuable resource for understanding embryonic osteogenesis and angiogenesis underlying vertebrate TLV and RP development at the cell type-specific resolution, which serves as a comprehensive view on the transcriptional profile of animal embryo development.
6.Analysis of the Reasons for Drug Shortage and Countermeasure Study in Medical Institutions of Sichuan Province from the Perspective of Manufacturers and Distribution Enterprises
Junfeng YAN ; Shan WU ; Nan YU ; Zhiwen REN ; Weinan LUO ; Changyu ZHU ; Hanghai WU
China Pharmacy 2019;30(10):1307-1311
OBJECTIVE: To investigate the reasons for drug shortage in medical institutions of Sichuan province and put forward relevant countermeasures, and to provide reference for establishing supply security mechanism of drug shortage. METHODS: Questionnaire survey was conducted to investigate drug shortage in 78 medical institutions of the province during Jan. 2015-Jun. 2017. Traceability investigation was conducted from manufacturers and distribution enterprises involved in drug shortage. Questionnaire survey and field investigation were combined to analyze the reasons for drug shortage in Sichuan province and put forward countermeasures. RESULTS: Totally 78 questionnaires were sent out to medical institutions with recovery rate and effective rate of 100%. A total of 206 drugs were reported by 78 medical institutions, involving 240 specifications for shortage in total. Totally 140 questionnaires and 68 questionnaires were distributed to the manufacturers and distribution enterprises involved in drug shortage, and the recovery rate and effective rate were all 100%. Combined with the field survey, survey results of shortage drugs of 212 specifications were obtained. From the perspective of manufacturers, the most important factors causing drug shortage were the increase of production cost (66.51%) and circulation cost(26.88%). From the perspective of distribution enterprises,the main factors causing drug shortage were insufficient supply of drugs(75.47%),inventory management(16.51%) and price inversion(11.32%). CONCLUSIONS: Main reasons of drug shortage from manufacturers and distribution enterprises include the increase of production cost and circulation cost, drug price inversion, inventory management and bidding procurement. It is suggested that measures should be taken to improve the bidding and pricing system of drugs, mobilize the enthusiasm of enterprises; improve the early warning mechanism of drug shortage on the enterprises, strengthen information communication; establish the mechanism of drug shortage reserve, organize the emergency production of drug for shortage; strengthen the management of drug shortage supply chain, purify the unhealthy atmosphere in the market; improve the emergency disposal methods of drug shortage, and improve the supply guarantee ability of drug shortage. Departments cooperate to reduce the emergence of drug shortage and ensure the continuous access to safe and effective drugs in clinic.
7.Investigation and Reason Analysis of Drug Shortage in 78 Medical Institutions from Sichuan Province
Junfeng YAN ; Nan YU ; Shan WU ; Zhiwen REN ; Weinan LUO ; Changyu ZHU ; Hanghai WU
China Pharmacy 2019;30(8):1014-1018
OBJECTIVE: To investigate the situation and reasons of drug shortage in some medical institutions from Sichuan province. METHODS: A questionnaire survey was conducted among 78 medical institutions in Sichuan province by stratified random sampling. The situation of drug shortage were collected from Jan. 2015 to Jun. 2017, mainly including the basic information of medical institutions, drug shortage situation, specific drug shortage information and the reasons for drug shortage. Descriptive analysis of the information collected by the questionnaire was carried out, and Logistic regression analysis of the data by SPSS 20.0 software was adopted to find out the key factors affecting drug shortage. RESULTS & CONCLUSIONS: Totally 78 medical institutions include 13 third-level hospitals, 22 second-level hospitals and 43 primary medical institutions (10 community health service centers, 33 township health centers). A total of 78 questionnaires were sent out, and the recovery rate and effective rate both were 100%. Among them, 68 medical institutions reported 206 shortage drugs totally, involving 240 specifications. The prices of more than 88.34% of the shortage drug were less than 50 yuan. Main types of shortage drugs included anti-infective drugs, central nervous system drugs and cardiovascular system drugs, and most of them were purchased directly through internet. The proportion of temporary shortage (shortage time<3 months) and long-term shortage (shortage time>12 months) was relatively high (more than 68% in total). Drug supply and medical institutions’own factors were two main causes of drug shortage. Logistic regression analysis showed that main factors affecting the time of drug shortage were hospital drug purchase process, location of medical institution and drug purchase price. The main factors affecting the specifications of drug shortage in medical institutions were the process of drug purchase, the limitation of hospital purchase catalogue, primary or non-primary medical institution, comprehensive or specialized hospitals. It is suggested that medical institutions in this region can reduce the drug shortage caused by their own reasons by building a platform for drug information management, optimizing drug purchase catalogues and plans, strengthening the management of pharmacy inventory and establishing a regulatory system for distribution enterprises.
8.Analysis of patient experience at public hospitals in China
Xiaohui ZHAI ; Shijing CHU ; Xuecheng GAO ; Dan WANG ; Borui REN ; Junfeng LIU ; Shuang WAN ; Pei WANG ; Fei XIE ; Yang SUN
Chinese Journal of Hospital Administration 2019;35(4):283-286
Objective To get an understanding of the patient experience in public hospitals nationwide, and to evaluate the implementation of the Action Plan to Improve Health Care. Methods Supported by the mobile technology, from September 6, 2017 to December 15, 2018, the authors conducted an online survey that measured the satisfaction of both inpatients and outpatients at secondary and tertiary hospitals across the country. 15 questions from six dimensions including registration experience, patient-doctor communication, nurse-patient communication, the healthcare signage system, responsiveness of care providers and privacy protection were prepared for outpatients, while 20 questions from nine aspects such as nurse-patient communication, patient-doctor communication, pain management, medication communication, admission and discharge information, responsiveness of care-givers, food service, friendliness to patient family, and the healthcare signage system were directed at inpatients. Descriptive statistical analysis was used to describe the basic features of the data. Results 9.18 million valid responses from outpatients and another 5.38 million from inpatients were obtained. The overall satisfaction rate with outpatient services had reached a score of 90.45 points where nurse-patient communication stands out as the top-rated dimension and privacy protection gets the lowest rating. On the other hand, the inpatient satisfaction stands at a score of 93.01 with friendliness to patient family receiving the top score and patient-doctor communication the lowest. Conclusions Despite the positive feedback Chinese patients give on the outpatient care they receive, we should make efforts to improve the outpatient care environment, the wayfinding system, privacy protection, and responsiveness of care-givers.
9. Clinical study on liver function, virology, serological changes and the safety of drug withdrawal in pregnant women who are chronic HBV carriers during pregnancy and postpartum
Xiaoxiao WANG ; Junfeng LU ; Yali WU ; Lina MA ; Yi JIN ; Zhenhuan CAO ; Shan REN ; Yali LIU ; Yanhong ZHENG ; Xinyue CHEN
Chinese Journal of Hepatology 2019;27(4):261-266
Objective:
To observe the changes of liver function, virology and serology and the safety of drug withdrawal in pregnant women who are chronic hepatitis B virus (HBV) carriers.
Methods:
A prospective clinical cohort was established to enroll pregnant women who are chronic HBV carriers and they were divided into the nucleoside/nucleotide analogs (NAs) intervention group and the non-NAs intervention group according to patients' wishes. Liver function, HBV DNA and HBV serological markers were detected at gestation, postpartum 6 weeks, 12 weeks, 24 weeks, 36 weeks and 48 weeks.
Results:
351 patients were enrolled, 320 in the NAs intervention group and 31 in the non-NAs intervention group. The proportion of postpartum hepatitis flares in both groups was higher than that in pregnancy (39.4% vs 12.5%,
10.Effect of Pien Tze Huang on bile excretion and its analgesic effect in experimental animals
Junfeng LI ; Feng REN ; Mei DING
Journal of Clinical Hepatology 2019;35(3):570-573
ObjectiveTo investigate the effect of Pien Tze Huang on bile excretion and its analgesic effect in experimental animals. MethodsA total of 30 guinea pigs were randomly divided into Pien Tze Huang group, ursodeoxycholic acid group, and control group. According to body mass, the three groups were treated with Pien Tze Huang (140 mg/kg), ursodeoxycholic acid (22.5 mg/kg), and normal saline, respectively, by gavage for 4 consecutive days. Then bile drainage was performed to measure the volume of bile secretion and the change in bile composition. Related liver function parameters were also measured. A total of 30 mice were randomly divided into Pien Tze Huang group (360 mg/kg), ursodeoxycholic acid group (120 mg/kg), and control group. At one hour after the last administration, the mice were given intraperitoneal injection of 0.6% glacial acetic acid (0.15 ml/10 g), and the writhing test was performed to observe the analgesic effect of Pien Tze Huang. A one-way analysis of variance was used for comparison of continuous data between multiple groups, and the least significant difference t-test was used for further comparison between two groups. ResultsCompared with the control group, the Pien Tze Huang group and the ursodeoxycholic acid group had a significant increase in the volume of bile secretion (P=0.039 and 0.009). There were no significant differences between the three groups in cholesterol, bilirubin, total bile acid, and phospholipid in bile (all P>0.05) and liver function parameters (alanine aminotransferase, aspartate aminotransferase, gamma-glutamyl transpeptidase, total bilirubin, direct bilirubin, indirect bilirubin, and total bile acid) (all P>0.05). Compared with the control group, the Pien Tze Huang group had a significant reduction in the number of writhing times (P<0.001), suggesting that Pien Tze Huang had a marked analgesic effect. ConclusionAnimal experiments show that Pien Tze Huang has marked choleretic and analgesic effects, which provides theoretical and data support for the clinical application of Pien Tze Huang.


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