1.Improving classification of low-resource COVID-19 literature by using Named Entity Recognition
Oscar LITHGOW-SERRANO ; Joseph CORNELIUS ; Vani KANJIRANGAT ; Carlos-Francisco MÉNDEZ-CRUZ ; Fabio RINALDI
Genomics & Informatics 2021;19(3):e22-
Automatic document classification for highly interrelated classes is a demanding task that becomes more challenging when there is little labeled data for training. Such is the case of the coronavirus disease 2019 (COVID-19) Clinical repository—a repository of classified and translated academic articles related to COVID-19 and relevant to the clinical practice—where a 3-way classification scheme is being applied to COVID-19 literature. During the 7th Biomedical Linked Annotation Hackathon (BLAH7) hackathon, we performed experiments to explore the use of named-entity-recognition (NER) to improve the classification. We processed the literature with OntoGene’s Biomedical Entity Recogniser (OGER) and used the resulting identified Named Entities (NE) and their links to major biological databases as extra input features for the classifier. We compared the results with a baseline model without the OGER extracted features. In these proof-of-concept experiments, we observed a clear gain on COVID-19 literature classification. In particular, NE’s origin was useful to classify document types and NE’s type for clinical specialties. Due to the limitations of the small dataset, we can only conclude that our results suggests that NER would benefit this classification task. In order to accurately estimate this benefit, further experiments with a larger dataset would be needed.
2.Anthelmintic efficacy of extracts of Spigelia anthelmia Linn on experimental Nippostrongylus braziliensis in rats.
Olorunfemi Cornelius JEGEDE ; Joseph Ologunja AJANUSI ; Ambrose O ADAUDI ; Rowland I AGBEDE
Journal of Veterinary Science 2006;7(3):229-232
Spigelia anthelmia Linn is used as a herb and is a common annual weed of cultivation in open re-growths, on unused land in towns as well as on road sides. The plant can grow to approximately 30 cm in height. The aim of this study was to screen extracts of Spigelia anthelmia for their anthelmintic activity against an experimental Nippostrongylus braziliensis infection in rats. Acute oral toxicity occurred at a dose of 1,140 mg/kg, while anthelmintic trials against Nippostrongylus braziliensis in rats using the aqueous fraction showed a progressive decrease in worm count with increasing dose (10, 13, 16, 20 and 25 mg per kg body weight) (p < 0.05). At 25 mg per kg body weight, the worm count was significantly lower than that at 10 mg per kg body weight (p < 0.05).
Animals
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Anthelmintics/*pharmacology/toxicity
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Drug Evaluation, Preclinical
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Lethal Dose 50
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Loganiaceae/*chemistry
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Medicine, African Traditional
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Nigeria
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Nippostrongylus/*growth&development
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Phytotherapy/*methods
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Plant Extracts/*pharmacology/toxicity
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Rats
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Rats, Wistar
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Strongylida Infections/*drug therapy/parasitology