1.A Case of Ureteral Nephrogenic Adenoma.
Bong Hwan KIM ; Chang Jun CHOI ; Jong Kab CHUNG ; Seong Woon PARK ; Ki Sbin SONG ; Kil Hyun OH ; Kwang Min LEE ; Dong Kyu CHUNG
Korean Journal of Urology 1995;36(6):674-676
Nephrogenic adenoma is a rare proliferative response of urothelium to chronic irritation or infection. It has been reported in the bladder, ureter, renal pelvis and urethra, but to date there have been only 15 reports, of its occurrence in the ureter. We present a further case of this lesion in this unusual location.
Adenoma*
;
Kidney Pelvis
;
Ureter*
;
Urethra
;
Urinary Bladder
;
Urothelium
2.Imaging Features of Rhabdoid Tumor of the Kidney in Children.
Sang Ho LEE ; Tae Il HAN ; Myeong Joon KIM ; Hye Kyung YOUN ; Jong Cheol KIM ; Jin Young CHUNG ; Hyun Young HAN ; Youn Seon CHOI ; Mun Kab SONG ; Kyunchul CHOEH
Journal of the Korean Radiological Society 1999;41(4):813-817
PURPOSE: To evaluate the difference in radiologic features of rhabdoid tumor of the kidney (RTK) in children according to the location of the tumor within the kidney. MATERIALS AND METHODS: We retrospectively reviewed the radiologic findings of pathologically confirmed RTK in seven children (5 boys and 2 girls; age range, 6 months to 4 years 8 months; median, 18 months). All subjects underwent abdominal CT. We analyzed tumor location, size, and margin; renal hilar involvement, subcapsular hematoma, calcification, necrosis, and lymphadenopathy. RTK was classified according to the location of the tumor within the kidney: A tumor that mainly located in the central portion of the kidney with or without peripheral extension was described as type I, while one located at the periphery was type II. Imaging findings between the two types were compared. RESULTS: Tumor size varied from 3 cm to 12 cm. Tumor outlines were ill-defined in four cases but relatively well-defined in three. Four tumors (57 %) were type I. Hilar involvement was found in all four and a small subcapsular hematoma in one. Three tumors (43%) were type II, and in all three, large crescent-shaped subcapsular hematomas were found. CONCLUSION: Centrally located RTK showed hilar involvement with a small subcapsular hematoma, while in cases of peripherally located RTK, a large subcapsular hematoma was present. These findings may be helpful for the differential diagnosis of other pediatric renal tumors.
Child*
;
Diagnosis, Differential
;
Female
;
Hematoma
;
Humans
;
Kidney*
;
Lymphatic Diseases
;
Necrosis
;
Retrospective Studies
;
Rhabdoid Tumor*
;
Tomography, X-Ray Computed
3.Imaging Features of Rhabdoid Tumor of the Kidney in Children.
Sang Ho LEE ; Tae Il HAN ; Myeong Joon KIM ; Hye Kyung YOUN ; Jong Cheol KIM ; Jin Young CHUNG ; Hyun Young HAN ; Youn Seon CHOI ; Mun Kab SONG ; Kyunchul CHOEH
Journal of the Korean Radiological Society 1999;41(4):813-817
PURPOSE: To evaluate the difference in radiologic features of rhabdoid tumor of the kidney (RTK) in children according to the location of the tumor within the kidney. MATERIALS AND METHODS: We retrospectively reviewed the radiologic findings of pathologically confirmed RTK in seven children (5 boys and 2 girls; age range, 6 months to 4 years 8 months; median, 18 months). All subjects underwent abdominal CT. We analyzed tumor location, size, and margin; renal hilar involvement, subcapsular hematoma, calcification, necrosis, and lymphadenopathy. RTK was classified according to the location of the tumor within the kidney: A tumor that mainly located in the central portion of the kidney with or without peripheral extension was described as type I, while one located at the periphery was type II. Imaging findings between the two types were compared. RESULTS: Tumor size varied from 3 cm to 12 cm. Tumor outlines were ill-defined in four cases but relatively well-defined in three. Four tumors (57 %) were type I. Hilar involvement was found in all four and a small subcapsular hematoma in one. Three tumors (43%) were type II, and in all three, large crescent-shaped subcapsular hematomas were found. CONCLUSION: Centrally located RTK showed hilar involvement with a small subcapsular hematoma, while in cases of peripherally located RTK, a large subcapsular hematoma was present. These findings may be helpful for the differential diagnosis of other pediatric renal tumors.
Child*
;
Diagnosis, Differential
;
Female
;
Hematoma
;
Humans
;
Kidney*
;
Lymphatic Diseases
;
Necrosis
;
Retrospective Studies
;
Rhabdoid Tumor*
;
Tomography, X-Ray Computed
4.Development of Polymorphic Simple Sequence Repeat Markers using High-Throughput Sequencing in Button Mushroom (Agaricus bisporus).
Hwa Yong LEE ; Sebastin RAVEENDAR ; Hyejin AN ; Youn Lee OH ; Kab Yeul JANG ; Won Sik KONG ; Hojin RYU ; Yoon Sup SO ; Jong Wook CHUNG
Mycobiology 2018;46(4):421-428
The white button mushroom (Agaricus bisporus) is one of the most widely cultivated species of edible mushroom. Despite its economic importance, relatively little is known about the genetic diversity of this species. Illumina paired-end sequencing produced 43,871,558 clean reads and 69,174 contigs were generated from five offspring. These contigs were subsequently assembled into 57,594 unigenes. The unigenes were annotated with reference genome in which 6,559 unigenes were associated with clusters, indicating orthologous genes. Gene ontology classification assigned many unigenes. Based on genome data of the five offspring, 44 polymorphic simple sequence repeat (SSR) markers were developed. The major allele frequency ranged from 0.42 to 0.92. The number of genotypes and the number of alleles ranged from 1 to 4, and from 2 to 4, respectively. The observed heterozygosity and the expected heterozygosity ranged from 0.00 to 1.00, and from 0.15 to 0.64, respectively. The polymorphic information content value ranged from 0.14 to 0.57. The genetic distances and UPGMA clustering discriminated offspring strains. The SSR markers developed in this study can be applied in polymorphism analyses of button mushroom and for cultivar discrimination.
Agaricales*
;
Alleles
;
Classification
;
Discrimination (Psychology)
;
Estrone
;
Gene Frequency
;
Gene Ontology
;
Genetic Variation
;
Genome
;
Genotype
;
Microsatellite Repeats*
5.Molecular Characterization of 170 New gDNA-SSR Markers for Genetic Diversity in Button Mushroom (Agaricus bisporus)
Hyejin AN ; Ick Hyun JO ; Youn Lee OH ; Kab Yeul JANG ; Won Sik KONG ; Jwa Kyung SUNG ; Yoon Sup SO ; Jong Wook CHUNG
Mycobiology 2019;47(4):527-532
We designed 170 new simple sequence repeat (SSR) markers based on the whole-genome sequence data of button mushroom (Agaricus bisporus), and selected 121 polymorphic markers. A total of 121 polymorphic markers, the average major allele frequency (M(AF)) and the average number of alleles (N(A)) were 0.50 and 5.47, respectively. The average number of genotypes (N(G)), observed heterozygosity (H(O)), expected heterozygosity (H(E)), and polymorphic information content (PIC) were 6.177, 0.227, 0.619, and 0.569, respectively. Pearson's correlation coefficient showed that M(AF) was negatively correlated with N(G) (−0.683), N(A) (−0.600), H(O) (−0.584), and PIC (−0.941). N(G), N(A), H(O), and PIC were positively correlated with other polymorphic parameters except for M(AF). UPGMA clustering showed that 26 A. bisporus accessions were classified into 3 groups, and each accession was differentiated. The 121 SSR markers should facilitate the use of molecular markers in button mushroom breeding and genetic studies.
6.Evaluation of Genetic Diversity and Population Structure Analysis among Germplasm of Agaricus bisporus by SSR Markers
Hyejin AN ; Hwa-Yong LEE ; Hyeran SHIN ; Jun Hyoung BANG ; Seahee HAN ; Youn-Lee OH ; Kab-Yeul JANG ; Hyunwoo CHO ; Tae Kyung HYUN ; Jwakyung SUNG ; Yoon-Sup SO ; Ick-Hyun JO ; Jong-Wook CHUNG
Mycobiology 2021;49(4):376-384
Agaricus bisporus is a popular edible mushroom that is cultivated worldwide. Due to its secondary homothallic nature, cultivated A. bisporus strains have low genetic diversity, and breeding novel strains is challenging. The aim of this study was to investigate the genetic diversity and population structure of globally collected A. bisporus strains using simple sequence repeat (SSR) markers. Agaricus bisporus strains were divided based on genetic distance-based groups and model-based subpopulations. The major allele frequency (MAF), number of genotypes (NG), number of alleles (NA), observed heterozygosity (HO), expected heterozygosity (HE), and polymorphic information content (PIC) were calculated, and genetic distance, population structure, genetic differentiation, and Hardy–Weinberg equilibrium (HWE) were assessed. Strains were divided into two groups by distance-based analysis and into three subpopulations by model-based analysis. Strains in subpopulations POP A and POP B were included in Group I, and strains in subpopulation POP C were included in Group II. Genetic differentiation between strains was 99%. Marker AB-gSSR-1057 in Group II and subpopulation POP C was confirmed to be in HWE. These results will enhance A. bisporus breeding programs and support the protection of genetic resources.
7.Evaluation of Genetic Diversity and Population Structure Analysis among Germplasm of Agaricus bisporus by SSR Markers
Hyejin AN ; Hwa-Yong LEE ; Hyeran SHIN ; Jun Hyoung BANG ; Seahee HAN ; Youn-Lee OH ; Kab-Yeul JANG ; Hyunwoo CHO ; Tae Kyung HYUN ; Jwakyung SUNG ; Yoon-Sup SO ; Ick-Hyun JO ; Jong-Wook CHUNG
Mycobiology 2021;49(4):376-384
Agaricus bisporus is a popular edible mushroom that is cultivated worldwide. Due to its secondary homothallic nature, cultivated A. bisporus strains have low genetic diversity, and breeding novel strains is challenging. The aim of this study was to investigate the genetic diversity and population structure of globally collected A. bisporus strains using simple sequence repeat (SSR) markers. Agaricus bisporus strains were divided based on genetic distance-based groups and model-based subpopulations. The major allele frequency (MAF), number of genotypes (NG), number of alleles (NA), observed heterozygosity (HO), expected heterozygosity (HE), and polymorphic information content (PIC) were calculated, and genetic distance, population structure, genetic differentiation, and Hardy–Weinberg equilibrium (HWE) were assessed. Strains were divided into two groups by distance-based analysis and into three subpopulations by model-based analysis. Strains in subpopulations POP A and POP B were included in Group I, and strains in subpopulation POP C were included in Group II. Genetic differentiation between strains was 99%. Marker AB-gSSR-1057 in Group II and subpopulation POP C was confirmed to be in HWE. These results will enhance A. bisporus breeding programs and support the protection of genetic resources.