1.A Novel 1.13 Mb Interstitial Duplication at 19q13.32 Causing Developmental Delay and Microcephaly in a Pediatric Patient: the First Asian Case Report.
John Hoon RIM ; Jeong A KIM ; Jongha YOO
Yonsei Medical Journal 2017;58(6):1241-1244
Only 6 patients with partial trisomy of the long arm of chromosome 19 (19q), caused by direct interstitial duplications, have been reported until today. Herein, we report a pediatric patient with a novel 1.13 Mb direct interstitial duplication within 19q13.32, which is the smallest fragment affected so far. A five-year old Korean boy of healthy parents presented with microcephaly, growth retardation, developmental delay, and craniofacial dysmorphism. Even though G-banded chromosome analysis at resolution of 550-band revealed normal karyotype, duplication of 1.13 Mb fragment within 19q13.32 was detected by array comparative genomic hybridization. Comparing with previously reported patients with pure duplication involving 19q as a sole chromosomal abnormality, our case showed the smallest duplication segment with relatively mild degree of clinical features. Our present case might serve as the landmark case among patients with 19q duplication for genotype-phenotype correlation study and further identification of critical region for 19q duplication abnormalities.
Arm
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Asian Continental Ancestry Group*
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Chromosome Aberrations
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Chromosomes, Human, Pair 19
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Comparative Genomic Hybridization
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Genetic Association Studies
;
Humans
;
Karyotype
;
Male
;
Microcephaly*
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Parents
;
Trisomy
3.Isochromosome 1q in Childhood Burkitt Lymphoma: The First Reported Case in Korea.
John Hoon RIM ; Hyo Sun KIM ; Saeam SHIN ; Seo Jin PARK ; Jong Rak CHOI
Annals of Laboratory Medicine 2015;35(6):663-665
No abstract available.
Bone Marrow/pathology
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Burkitt Lymphoma/*diagnosis/genetics
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Child
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Chromosomes, Human, Pair 1
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Female
;
Flow Cytometry
;
Humans
;
Immunoglobulin Heavy Chains/genetics
;
Isochromosomes/*genetics
;
Karyotype
;
Karyotyping
;
Proto-Oncogene Proteins c-myc/genetics
;
Republic of Korea
;
Translocation, Genetic
4.Clinical and Molecular Delineation of a Novel De Novo 4q28.3-31.21 Interstitial Deletion in a Patient with Developmental Delay.
John Hoon RIM ; Seong Woo KIM ; Sung Hee HAN ; Jongha YOO
Yonsei Medical Journal 2015;56(6):1742-1744
No abstract available.
Child
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Chromosome Banding
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*Chromosome Deletion
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Chromosomes, Human, Pair 4/*genetics
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Comparative Genomic Hybridization
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Developmental Disabilities/diagnosis/*genetics
;
Humans
;
Male
;
Sequence Deletion
5.Novel Non-contiguous Duplications in the DMD Gene in Five Patients with Duchenne Muscular Dystrophy.
John Hoon RIM ; Sun Mi CHO ; Nae YU ; Kyung A LEE
Laboratory Medicine Online 2015;5(3):121-126
BACKGROUND: Muscular dystrophy is an X-linked recessive disorder caused by mutations in the DMD gene. Muscular dystrophy is classified into 2 types; Duchenne muscular dystrophy (DMD), which has severe clinical symptoms, and Becker muscular dystrophy (BMD), which has much milder clinical symptoms. Phenotypic progression to either DMD or BMD can be predicted by analyzing mutations in DMD by using the reading frame rule. METHODS: Of 88 patients with mutations in DMD, which were detected using Multiplex Ligation-dependent Probe Amplification DMD test kit (MRC-Holland, The Netherlands), medical records of 5 patients with non-contiguous duplications were reviewed. These rare non-contiguous duplications in DMD were compared with those reported previously. RESULTS: We identified 3 novel non-contiguous duplications in DMD that included exons 2-7 and 45-51, exons 5-37 and 50-59, and exons 52-53 and 56-61. The 5 patients with these non-contiguous duplications showed the phenotypic features of DMD. Especially, duplication of exons 52-53 and 56-61 was observed in a family, i.e., 2 DMD-affected brothers and their carrier mother. CONCLUSIONS: Prediction of phenotypes associated with complex non-contiguous duplications by using the reading frame rule is difficult because the duplications affect the expression of DMD together. Because most patients with non-contiguous duplications showed the phenotypic features of DMD, the reading frame rule should be interpreted cautiously. This study provides important insights on the non-contiguous duplications in DMD for understanding genotype-phenotype correlations and for developing dystrophin for therapeutic purposes.
Dystrophin
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Exons
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Genetic Association Studies
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Humans
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Medical Records
;
Mothers
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Multiplex Polymerase Chain Reaction
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Muscular Dystrophies
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Muscular Dystrophy, Duchenne*
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Phenotype
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Reading Frames
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Siblings
6.Increase of Clostridium difficile in Community; Another Worrisome Burden for Public Health.
Young Ah KIM ; John Hoon RIM ; Min Hyuk CHOI ; Heejung KIM ; Kyungwon LEE
Annals of Clinical Microbiology 2016;19(1):7-12
BACKGROUND: Increasing rates of Clostridium difficile infection (CDI) have been reported mainly in Europe and North America; however, only limited reports have originated in Korea. The current epidemiology of CDI in the community could help to understand the outpatient healthcare environment and to extend infection control measures to outpatient settings. METHODS: C. difficile isolates in NHIS Ilsan Hospital from 2012 to 2014 were included in this study. Clinical characteristics, acquisition types, and previous antimicrobial therapy were obtained via Electronic Medical Records. C. difficile culture was performed only in unformed stool. Toxin was positive by enzyme-linked fluorescent immunoassay (ELFA) in 247 specimens. In addition, toxin B and binary toxin gene were detected by PCR in 57 specimens. CDI was defined by toxigenic C. difficile isolation in unformed stool. RESULTS: In the previous 3 years, 251 unduplicated C. difficile cases have been detected; 168 healthcare facility- associated hospital onset (HCFA-HO), 45 healthcare facility-associated community onset (HCFA-CO), and 38 community-associated (CA). Toxin positive rates by ELFA for toxin A&B were HCFA-HO 50.6% (84/166), HCFA-CO 41.9% (18/43), and CA 42.1% (16/38). Toxin positive rate by PCR for tcdB were HCFA-HO 62.9% (22/35), HCFA-CO 69.2% (9/13), and CA 100% (9/9). No binary toxin (cdtA/cdtB) was detected in 57 cases. CONCLUSION: Community-associated CDI may be underestimated in Goyang province, Korea, especially by commonly used ELFA toxin assay. The spread of community-associated CDI should be recognized as an increasing burden of public health.
Clostridium difficile*
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Clostridium*
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Community-Acquired Infections
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Delivery of Health Care
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Electronic Health Records
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Epidemiology
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Europe
;
Humans
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Immunoassay
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Infection Control
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Korea
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North America
;
Outpatients
;
Polymerase Chain Reaction
;
Public Health*
7.Clinical Utility of Bone Marrow Study in Gaucher Disease: A Case Report of Gaucher Disease Type 3 With Intractable Myoclonic Seizures.
John Hoon RIM ; Minyoul BAIK ; Sun Och YOON ; Kyoung HEO ; Jaewoo SONG
Annals of Laboratory Medicine 2016;36(2):177-179
No abstract available.
Adult
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Anticonvulsants/therapeutic use
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Bone Marrow/*pathology
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Epilepsies, Myoclonic/complications/*diagnosis/drug therapy
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Female
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Gaucher Disease/complications/*diagnosis/drug therapy
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Glucosylceramidase/genetics/therapeutic use
;
Humans
;
Phenotype
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Point Mutation
;
Recurrence
8.Isodicentric Chromosome 15 Syndrome in a Korean Patient With Cafe-au-lait Spots.
John Hoon RIM ; Hee Jung CHUNG ; Saeam SHIN ; Seo Jin PARK ; Jong Rak CHOI
Annals of Laboratory Medicine 2015;35(4):474-476
No abstract available.
Cafe-au-Lait Spots*
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Chromosomes, Human, Pair 15*
;
Humans
9.Performance Evaluation of the DxC 700 AU Chemistry Analyzer in Hemoglobin A1c Measurement
Yu Jeong CHOI ; Hyein KANG ; Chan-Ik CHO ; John Hoon RIM ; Sang-Guk LEE ; Jong-Baeck LIM
Annals of Laboratory Medicine 2023;43(2):167-173
Background:
Accurate measurement of glycated hemoglobin (HbA1c) is crucial for a diabetes diagnosis and subsequent patient management. The detection method and presence of variant Hb can interfere with HbA1c measurements. We evaluated the HbA1c-measuring performance of the DxC 700 AU (Beckman Coulter, Brea, CA, USA) immunoassay-based device in comparison with another immunoassay device and the reference method.
Methods:
A total of 120 normal and 14 variant Hb samples were analyzed using the Cobas c 513 (Roche Diagnostics, Mannheim, Germany) and DxC 700 AU analyzers. Variant Hb samples were also analyzed using the reference method, along with 20 normal samples. The accuracy, precision, linearity, and carryover were determined.
Results:
DxC 700 AU results strongly correlated with those of Cobas c 513 and exhibited accuracy in comparison with the reference method. The within-run, between-run, between-day, and total imprecision (%CV) values for the low- and high-concentration control materials were below 2%. The results of DxC 700 AU were linear over a wide HbA1c range (3.39%–18.30%). Although DxC 700 AU performed well in the presence of variant Hb, the HbA1c concentration was underestimated in the presence of fetal Hb. The possibility of interference from a high HbH proportion could not be ruled out.
Conclusions
The overall analytical performance of DxC 700 AU was acceptable. The device is accurate, precise, and linear over a wide HbA1c concentration range. Although DxC 700 AU results highly correlated with those of Cobas c 513, caution should be exercised in cases of high HbF and HbH concentrations.
10.Associations of LDL Cholesterol, Non-HDL Cholesterol, and Apolipoprotein B With Cardiovascular Disease Occurrence in Adults: Korean Genome and Epidemiology Study
Shin Young YUN ; John Hoon RIM ; Hyein KANG ; Sang-Guk LEE ; Jong-Baeck LIM
Annals of Laboratory Medicine 2023;43(3):237-243
Background:
Despite the superiority of non-HDL cholesterol (non-HDL-C) and apolipoprotein B (ApoB) as lipid markers for atherosclerotic cardiovascular disease (ASCVD), these are only suitable as secondary markers. We compared LDL cholesterol (LDL-C), non-HDL-C, and ApoB concentrations with respect to the occurrence of cardiovascular disease in adults enrolled in the Korean Genome and Epidemiology Study (KoGES).
Methods:
We used information on age; sex; medical history; family history of ASCVD; current lipid-lowering therapy; current smoking status; and creatinine, total cholesterol, HDL-C, LDL-C, triglyceride, and ApoB concentrations from 5,872 KoGES participants without ASCVD. New ASCVD development was monitored during the 8-year follow-up period. Adjusted hazard ratios (aHRs) for ASCVD of LDL-C, non-HDL-C, and ApoB concentrations were calculated based on the multivariate Cox regression analyses. The participants were also grouped as low and high according to the median values for each lipid marker, and calculated aHRs of each group combined by two lipid makers.
Results:
ApoB showed the highest aHR per 1-SD for ASCVD (1.26; 95% confidence interval [CI], 1.11–1.43), followed by non-HDL-C (1.25; 95% CI, 1.11–1.41) and LDL-C (1.20; 95% CI, 1.06–1.37). The group with low LDL-C and high ApoB concentrations had a significantly higher aHR for ASCVD (1.61; 95% CI, 1.05–2.48) compared to the reference group values (low LDL-C and low ApoB concentrations). The aHR for the group with high LDL-C and low ApoB concentrations was not significant (1.30; 95% CI, 0.79–2.16).
Conclusions
ApoB, non-HDL-C, and LDL-C are independent risk factors for ASCVD. Increases in the aHR per 1-SD for ASCVD were more strongly affected by ApoB, followed by non-HDL-C and LDL-C. Participants with low LDL-C and high ApoB concentrations showed increased ASCVD risk. For individuals with ASCVD risk factors, even those presenting normal LDL-C concentrations, measuring ApoB concentrations can provide useful information for better evaluation of ASCVD risk.