1.Support Vector Regression for Non-invasive Detection of Human Hemoglobin
Jingze YUAN ; Qipeng LU ; Jingli WANG ; Haiquan DING ; Hongzhi GAO ; Chunyang WU ; Wanxia LI
Chinese Journal of Analytical Chemistry 2017;45(9):1291-1296
To facilitate noninvasive diagnosis of anemia, high-performance and portable near infrared (NIR) spectrometer for human blood constituents was designed and fabricated based on linear variable filter (LVF).Meanwhile, the performance of support vector regression (SVR) model for quantitative analysis of human hemoglobin (Hb) was investigated.Spectral data were collected noninvasively from 100 volunteers by self-designed LVF-NIR spectrometer, then divided into calibration set, validation set 1 and 2.To establish a robust SVR model, grid search method was applied to optimize the penalty parameter and kernel function parameter c=5.28, g=0.33.Then, Hb levels in the validation 1 and 2 sets were quantitatively analyzed.The results showed that the root mean square error of prediction (RMSEP) were 10.20 g/L and 10.85 g/L, respectively, and the relative RMSEP (R-RMSEP) were 6.85% and 7.48%, respectively.The results indicated that the SVR model had high prediction accuracy to Hb level and adaptability to different samples, and could satisfy the requirements of clinical measurement.Based on the SVR algorithm, the self-designed LVF-NIR spectrometer has a wide application prospect in the field of non-invasive anemia diagnosis.
2.Alterations of the Ca²⁺ signaling pathway in pancreatic beta-cells isolated from db/db mice.
Kuo LIANG ; Wen DU ; Jingze LU ; Fei LI ; Lu YANG ; Yanhong XUE ; Bertil HILLE ; Liangyi CHEN
Protein & Cell 2014;5(10):783-794
Upon glucose elevation, pancreatic beta-cells secrete insulin in a Ca(2+)-dependent manner. In diabetic animal models, different aspects of the calcium signaling pathway in beta-cells are altered, but there is no consensus regarding their relative contributions to the development of beta-cell dysfunction. In this study, we compared the increase in cytosolic Ca(2+) ([Ca(2+)]i) via Ca(2+) influx, Ca(2+) mobilization from endoplasmic reticulum (ER) calcium stores, and the removal of Ca(2+) via multiple mechanisms in beta-cells from both diabetic db/db mice and non-diabetic C57BL/6J mice. We refined our previous quantitative model to describe the slow [Ca(2+)]i recovery after depolarization in beta-cells from db/db mice. According to the model, the activity levels of the two subtypes of the sarco-endoplasmic reticulum Ca(2+)-ATPase (SERCA) pump, SERCA2 and SERCA3, were severely down-regulated in diabetic cells to 65% and 0% of the levels in normal cells. This down-regulation may lead to a reduction in the Ca(2+) concentration in the ER, a compensatory up-regulation of the plasma membrane Na(+)/Ca(2+) exchanger (NCX) and a reduction in depolarization-evoked Ca(2+) influx. As a result, the patterns of glucose-stimulated calcium oscillations were significantly different in db/db diabetic beta-cells compared with normal cells. Overall, quantifying the changes in the calcium signaling pathway in db/db diabetic beta-cells will aid in the development of a disease model that could provide insight into the adaptive transformations of beta-cell function during diabetes development.
Animals
;
Calcium
;
metabolism
;
Calcium Signaling
;
drug effects
;
Cell Membrane Permeability
;
drug effects
;
Cells, Cultured
;
Down-Regulation
;
drug effects
;
Endoplasmic Reticulum
;
metabolism
;
Glucose
;
pharmacology
;
Insulin-Secreting Cells
;
cytology
;
drug effects
;
metabolism
;
Mice
;
Mice, Inbred C57BL
;
Mice, Obese
;
Potassium Chloride
;
pharmacology
;
Sarcoplasmic Reticulum Calcium-Transporting ATPases
;
metabolism
;
Sodium-Calcium Exchanger
;
metabolism
;
Thapsigargin
;
pharmacology
;
Up-Regulation
;
drug effects
3.Bulk-like endocytosis plays an important role in the recycling of insulin granules in pancreatic beta cells.
Du WEN ; Yanhong XUE ; Kuo LIANG ; Tianyi YUAN ; Jingze LU ; Wei ZHAO ; Tao XU ; Liangyi CHEN
Protein & Cell 2012;3(8):618-626
Although bulk endocytosis has been found in a number of neuronal and endocrine cells, the molecular mechanism and physiological function of bulk endocytosis remain elusive. In pancreatic beta cells, we have observed bulk-like endocytosis evoked both by flash photolysis and trains of depolarization. Bulk-like endocytosis is a clathrin-independent process that is facilitated by enhanced extracellular Ca(2+) entry and suppressed by the inhibition of dynamin function. Moreover, defects in bulk-like endocytosis are accompanied by hyperinsulinemia in primary beta cells dissociated from diabetic KKAy mice, which suggests that bulk-like endocytosis plays an important role in maintaining the exo-endocytosis balance and beta cell secretory capability.
Animals
;
Calcium
;
metabolism
;
Cytoplasmic Granules
;
metabolism
;
Diabetes Mellitus
;
metabolism
;
pathology
;
Disease Models, Animal
;
Dynamins
;
metabolism
;
Electric Capacitance
;
Endocytosis
;
physiology
;
Insulin
;
metabolism
;
Insulin-Secreting Cells
;
metabolism
;
pathology
;
Male
;
Mice
;
Mice, Inbred C57BL
;
Patch-Clamp Techniques
;
Photolysis
;
Primary Cell Culture
4.HID-1 is a peripheral membrane protein primarily associated with the medial- and trans- Golgi apparatus.
Lifen WANG ; Yi ZHAN ; Eli SONG ; Yong YU ; Yaming JIU ; Wen DU ; Jingze LU ; Pingsheng LIU ; Pingyong XU ; Tao XU
Protein & Cell 2011;2(1):74-85
Caenorhabditis elegans hid-1 gene was first identified in a screen for mutants with a high-temperature-induced dauer formation (Hid) phenotype. Despite the fact that the hid-1 gene encodes a novel protein (HID-1) which is highly conserved from Caenorhabditis elegans to mammals, the domain structure, subcellular localization, and exact function of HID-1 remain unknown. Previous studies and various bioinformatic softwares predicted that HID-1 contained many transmembrane domains but no known functional domain. In this study, we revealed that mammalian HID-1 localized to the medial- and trans- Golgi apparatus as well as the cytosol, and the localization was sensitive to brefeldin A treatment. Next, we demonstrated that HID-1 was a peripheral membrane protein and dynamically shuttled between the Golgi apparatus and the cytosol. Finally, we verified that a conserved N-terminal myristoylation site was required for HID-1 binding to the Golgi apparatus. We propose that HID-1 is probably involved in the intracellular trafficking within the Golgi region.
Animals
;
Brefeldin A
;
pharmacology
;
Cell Line, Tumor
;
Cytosol
;
drug effects
;
metabolism
;
Humans
;
Intracellular Space
;
drug effects
;
metabolism
;
Membrane Proteins
;
metabolism
;
Protein Transport
;
drug effects
;
Rats
;
Vesicular Transport Proteins
;
metabolism
;
trans-Golgi Network
;
drug effects
;
metabolism
5.Roles of Yes-associated protein in epidermal stem cell differentiation after ionizing radiation
Libin WANG ; Junfei CHEN ; Fang YUAN ; Jingze WANG ; Lu LIU ; Xuewu WANG ; Zengqiang YUAN
Chinese Journal of Pharmacology and Toxicology 2024;38(7):511-516
OBJECTIVE To explore the role of Yes-associated protein(YAP)in epidermal stem cell(EPSC)differentiation after ionizing radiation(IR).METHODS ① A punch was used to induce skin injuries on the back of mice.The IR group received localized irradiation with 60 Co γ-rays,while the normal control group did not.Samples were collected at 0,1,3,6,9,and 12 d for RNA and protein extraction.Western blotting was used to detect changes in YAP protein expressions during wound healing.Real-time quantitative polymerase chain reaction(RT-qPCR)was performed to assess the mRNA levels of Yap and its downstream target genes,connective tissue growth factor(Ctgf),and cysteine-rich protein 61(Cyr61).② EPSCs were exposed to 60 Co γ at a dose of 4 or 8 Gy,while the control group was not irradiated.Cells were collected to detect the levels of YAP protein via Western blotting.Cells were collected at 4,12,24,and 36 h post-IR to assess the levels of YAP mRNA by RT-qPCR.③ Short hairpin RNA(shRNA)was used to establish stable YAP knockdown cell lines,and the knockdown efficiency of sh YAP was verified by Western blotting.RT-qPCR was then performed to detect the impact of YAP knockdown on mRNA levels of K1 and K10 after IR.RESULTS① Compared with the control group,the YAP protein level in the IR group during wound healing was significantly reduced(P<0.05,P<0.01),so were the mRNA levels of Yap and its downstream target genes Ctgf and Cyr61(P<0.05,P<0.01).② Compared to the cell control group,the mRNA and protein levels of YAP in the IR group cells were significantly reduced(P<0.01).③ In the sh YAP cells,the YAP protein level was significantly reduced(P<0.01).Furthermore,the mRNA levels of K1 and K10 were significantly decreased after IR in sh YAP cells(P<0.01).CONCLUSION YAP can regulate EPSC differentiation in wound healing after IR.