1.Genomic Bioinformatics Analysis on Different Diseases with the Same Syndrome for Pulmonary Related Comorbidities in Idiopathic Pulmonary Fibrosis
Yongming LIU ; Xiaodong LYU ; Lijian PANG ; Ningzi ZANG ; Yuanyu LIANG ; Jingyu WANG ; Jiaran WANG ; Jiyu ZOU ; Ye SHENG
Chinese Journal of Information on Traditional Chinese Medicine 2024;31(12):20-26
Objective To explore the biological basis of different diseases with the same syndrome for pulmonary related comorbidities(pulmonary hypertension,obstructive sleep apnea syndrome,chronic obstructive pulmonary disease,lung cancer)in idiopathic pulmonary fibrosis(IPF)through genomic bioinformatics analysis.Methods GSE110147,GSE113439,GSE135917,GSE106986 and GSE118370 datasets were downloaded as research subjects.The differential genes between each disease group and the control group were screened.Cytoscape 3.10.0 software was used for topology analysis to screen core genes.OmicShare was used to perform GO and KEGG pathway enrichment analyses on core genes.Results A total of 23 core genes related to IPF was obtained.GO enrichment analysis showed that core genes were mainly enriched in biological processes such as cellular process,metabolic process,biological regulation/biological process,developmental process,localization,response to stimulus,immune system process and signaling;in cellular components such as cellular anatomical entity and protein-containing complex;in molecular functions such as binding,catalytic activity,structural molecule activity,molecular adaptor activity,molecular function regulator and transcription regulator activity.KEGG pathway enrichment analysis showed that core genes were mainly enriched in ribosome biogenesis in eukaryotes,AGE-RAGE signaling pathway in diabetic complications,Th17 cell differentiation,JAK-STAT signaling pathway,RNA polymerase,neutrophil extracellular trap formation.Conclusion Using genomic bioinformatics analysis to explore the core genes and signaling pathways of pulmonary related comorbidities in IPF can reveal the mechanism of different diseases with the same syndrome for pulmonary related comorbidities in IPF to a certain extent.
2.SUMO1 regulates post-infarct cardiac repair based on cellular heterogeneity
Zhihao LIU ; Xiaozhi LIU ; Li LIU ; Ying WANG ; Jie ZHENG ; Lan LI ; Sheng LI ; Han ZHANG ; Jingyu NI ; Chuanrui MA ; Xiumei GAO ; Xiyun BIAN ; Guanwei FAN
Journal of Pharmaceutical Analysis 2023;13(2):170-186
Small ubiquitin-related modifier(SUMOylation)is a dynamic post-translational modification that maintains cardiac function and can protect against a hypertrophic response to cardiac pressure overload.However,the function of SUMOylation after myocardial infarction(MI)and the molecular details of heart cell responses to SUMO1 deficiency have not been determined.In this study,we demonstrated that SUMO1 protein was inconsistently abundant in different cell types and heart regions after MI.However,SUMO1 knockout significantly exacerbated systolic dysfunction and infarct size after myocardial injury.Single-nucleus RNA sequencing revealed the differential role of SUMO1 in regulating heart cells.Among cardiomyocytes,SUMO1 deletion increased the Nppa+Nppb+Ankrd1+cardiomyocyte subcluster pro-portion after MI.In addition,the conversion of fibroblasts to myofibroblasts subclusters was inhibited in SUMO1 knockout mice.Importantly,SUMO1 loss promoted proliferation of endothelial cell subsets with the ability to reconstitute neovascularization and expressed angiogenesis-related genes.Computational analysis of ligand/receptor interactions suggested putative pathways that mediate cardiomyocytes to endothelial cell communication in the myocardium.Mice preinjected with cardiomyocyte-specific AAV-SUMO1,but not the endothelial cell-specific form,and exhibited ameliorated cardiac remodeling following MI.Collectively,our results identified the role of SUMO1 in cardiomyocytes,fibroblasts,and endothelial cells after Ml.These findings provide new insights into SUMO1 involvement in the patho-genesis of MI and reveal novel therapeutic targets.
3.The application of "mutual support" framework in autologous costal cartilage rhinoplasty
Qinhao GU ; Jingyu LI ; Ji WANG ; Xiao FENG ; Yi SUN ; Sheng YAN ; Sufan WU ; Peihong JIN
Chinese Journal of Plastic Surgery 2022;38(7):730-736
Objective:To investigate the clinical effect of "mutual support" framework in costal cartilage rhinoplasty.Methods:From June 2020 to December 2021, the patients were enrolled and undergone rhinoplasty with bilateral lower lateral cartilage margin incision combined with nasal columnar incision in the Department of Plastic & Reconstructive Surgery of Zhejiang Provincial People’s Hospital. During the operation, the sixth costal cartilage was made into the nasal columella support graft(strut) and the nasal tip graft integrated scaffold, and the septal extension grafts (SEG). The strut and SEG were sutured in the same plane to construct the framework to correct the aesthetic defects of the nose. Abode Photoshop CS 6.0 was used to measure a series of aesthetics index before and 6 months after surgery, including nasofrontal angle, nasorostral angle, nasolabial angle, columella lobular angle, ratio of tip projection to the length of the nose and ratio of the length of the infratip lobule to the length of the nasal columella to evaluate the surgical effect. Visual analogue scale (VAS) and rhinoplasty outcome evaluation (ROE) were used to investigate the patients’ satisfaction. Paired t-test was used for data analysis and P<0.05 was considered statistically significant. Results:A total of 53 patients were enrolled, including 4 males and 49 females, aged from 18 to 45 years (average age: 25.6 years). Forty-nine cases were primary rhinoplasty and 4 cases were secondary rhinoplasty. No short-term complications including hemorrhage and infection occurred in 53 patients. All patients were followed up for 6-12 months. There were statistically significant differences in nasofrontal angle, nasorostral angle, nasolabial angle, columella lobular angle, ratio of tip projection to the length of the nose and ratio of the length of the infratip lobule to the length of the nasal columella( P<0.01), which sugguested that aesthetic defects of the nose were corrected and no obvious deflection and rotation of nasal tip occured. VAS score and ROE score postoperatively were 7.6±0.4 and 21.3±2.1, respectively, which were significantly higher than preoperatively( 6.1±0.5, 10.5±1.6)( P< 0.01). Postoperative satisfaction survey showed that swelling disappeared within 4-6 weeks after surgery, and no obvious ventilatory disorder, paresthesia and hyposmia symptoms occurred. Most patients were satisfied with the aesthetic and functional results. Conclusions:The "mutual support" framework in costal cartilage rhinoplasty can reduce the risk of framework deflection and nasal tip rotation and obtain satisfactory nasal columella shape.
4.The application of "mutual support" framework in autologous costal cartilage rhinoplasty
Qinhao GU ; Jingyu LI ; Ji WANG ; Xiao FENG ; Yi SUN ; Sheng YAN ; Sufan WU ; Peihong JIN
Chinese Journal of Plastic Surgery 2022;38(7):730-736
Objective:To investigate the clinical effect of "mutual support" framework in costal cartilage rhinoplasty.Methods:From June 2020 to December 2021, the patients were enrolled and undergone rhinoplasty with bilateral lower lateral cartilage margin incision combined with nasal columnar incision in the Department of Plastic & Reconstructive Surgery of Zhejiang Provincial People’s Hospital. During the operation, the sixth costal cartilage was made into the nasal columella support graft(strut) and the nasal tip graft integrated scaffold, and the septal extension grafts (SEG). The strut and SEG were sutured in the same plane to construct the framework to correct the aesthetic defects of the nose. Abode Photoshop CS 6.0 was used to measure a series of aesthetics index before and 6 months after surgery, including nasofrontal angle, nasorostral angle, nasolabial angle, columella lobular angle, ratio of tip projection to the length of the nose and ratio of the length of the infratip lobule to the length of the nasal columella to evaluate the surgical effect. Visual analogue scale (VAS) and rhinoplasty outcome evaluation (ROE) were used to investigate the patients’ satisfaction. Paired t-test was used for data analysis and P<0.05 was considered statistically significant. Results:A total of 53 patients were enrolled, including 4 males and 49 females, aged from 18 to 45 years (average age: 25.6 years). Forty-nine cases were primary rhinoplasty and 4 cases were secondary rhinoplasty. No short-term complications including hemorrhage and infection occurred in 53 patients. All patients were followed up for 6-12 months. There were statistically significant differences in nasofrontal angle, nasorostral angle, nasolabial angle, columella lobular angle, ratio of tip projection to the length of the nose and ratio of the length of the infratip lobule to the length of the nasal columella( P<0.01), which sugguested that aesthetic defects of the nose were corrected and no obvious deflection and rotation of nasal tip occured. VAS score and ROE score postoperatively were 7.6±0.4 and 21.3±2.1, respectively, which were significantly higher than preoperatively( 6.1±0.5, 10.5±1.6)( P< 0.01). Postoperative satisfaction survey showed that swelling disappeared within 4-6 weeks after surgery, and no obvious ventilatory disorder, paresthesia and hyposmia symptoms occurred. Most patients were satisfied with the aesthetic and functional results. Conclusions:The "mutual support" framework in costal cartilage rhinoplasty can reduce the risk of framework deflection and nasal tip rotation and obtain satisfactory nasal columella shape.
5.Research progress on the treatment for aging lung transplantation recipients with cardiovascular disease
Guohui JIAO ; Yating SHENG ; Jingyu CHEN
Chinese Journal of Clinical Thoracic and Cardiovascular Surgery 2022;29(12):1671-1677
As the aging proceeds worldwide, aging lung transplantation recipients have been increased dramatically. Aging population with end-stage lung diseases also have comorbidities, such as cardiovascular disease, which may impact the prognosis of lung transplantation. Recent researches on lung transplantation have explored the characteristics of aging recipients, strategy selection on transplantation and cardiovascular disease management, as well as risk factors for post-transplantation complications and death. However, researches on lung transplantation recipients with cardiac valve disease are just in the initial stage. With the advancement of transcatheter technique, more patients will be benefited. We summarized the advancement in this field and took an outlook for future clinical researches.
6.Clinical research of pediatric giant posterior fossa tumors
Zhongding ZHANG ; Jingyu ZHANG ; Yue YANG ; Huangyi FANG ; Hong FU ; Hansong SHENG
Chinese Journal of Neuromedicine 2021;20(12):1237-1242
Objective:To explore the clinical features and treatment efficiencies of pediatric giant posterior fossa tumors.Methods:A retrospective analysis was performed. The clinical data of 18 children with giant posterior fossa tumors, whose maximum diameter of any section was over 5 cm, admitted to our hospital from January 2015 to June 2020, were collected. The surgical treatment results were analyzed.Results:The tumor volume of 18 children was (63.9±20.7) mL (33.2-116.2 mL). Sixteen children had different degrees of preoperative obstructive hydrocephalus; ommaya capsule implantation was performed in 2, ventriculoperitoneal shunt was performed in one, and external ventricular drainage was performed in one before surgery; intraoperative external ventricle drainage was performed in 5; and the left 7 had postoperative self-healing. Tumor resection was performed in 17 children, including 10 with total resection and 7 with subtotal resection. The postoperative pathological results indicated medulloblastoma in 10 patients, ependymoma in 3 patients, pilocytic astrocytoma in 2 patients, oligodendroglioma in 1 patient, and yolk sac tumor in 1 patient;12 patients were treated with chemotherapy and 9 with radiotherapy. Postoperative persistent hydrocephalus was noted in 2 patients, cerebellar mutism in 2 patients, and subarachnoid hemorrhage combined with ventricular hematocele in 1 patient. The follow-up period ranged from 3 to 67 months: 13 children survived for more than one year (10 lived without tumor recurrence); 8 of the 10 patients with total tumor resection had progression-free survival for more than 1 year (the other 2 patients were lost of follow-up), while 3 of the 7 patients with subtotal resection had progression-free survival for more than 1 year.Conclusion:Pediatric giant posterior fossa tumors have high complication rate, high recurrence rate and poor prognosis; symptomatic treatment, total resection of the tumors, and adjuvant radiotherapy/ chemotherapy are effective treatment methods.
7.Operation cooperation and management of bilateral lung transplantation for the first case with novel coronavirus pneumonia in the world
Haiying XU ; Jianan QIN ; Jingyu CHEN ; Ling SHENG ; Zhiqiang DONG ; Li ZHOU ; Yu DAI
Organ Transplantation 2020;11(4):497-
This paper summarized the operation cooperation and management of the first case of bilateral lung transplantation assisted with double extracorporeal membrane oxygenation (ECMO) for the recipient with novel coronavirus pneumonia (COVID-19) in the world. The bilateral lung transplantation assisted by double ECMO had been accomplished successfully on a recipient with COVID-19, who was supported by ventilator and ECMO, with other organs function basically normal. The operation took 405 min and went smoothly. The cooperation and management guidelines of the operation room included the following: setting up of COVID-19 emergency operation group quickly; listing and preparing of the detailed operation supplies; transferring of the whole system of lung transplantation operating room in Wuxi People's Hospital to the Wuxi No.5 People's Hospital (isolation hospital); reconstruction of a negative pressure operating room for lung transplantation; formulating and strictly implementing the guidelines and management process for the operation of patient with COVID-19.
8.Clinical epidemiological analysis of 2 403 cases of lung cancer
Yujin WANG ; Jingyu HUANG ; Weidong HU ; Sheng LI ; Zheng TANG ; Zetian YANG ; Xiaoyan SHEN ; Congkuan SONG ; Fei LI
Journal of International Oncology 2019;46(8):460-465
Objective To understand preliminaryly the epidemiological trend of lung cancer in recent years by retrospective analysis of 2 403 cases of lung cancer in Zhongnan Hospital of Wuhan University from 2013 to 2017.Methods The clinical data of patients with primary bronchogenic cancer diagnosed in Zhongnan Hospital of Wuhan University from 2013 to 2017 were collected.The clinical data such as gender,age,history of tobacco and alcohol,operation,pathological type,clinical stage and epidermal growth factor receptor (EGFR) gene mutation were analyzed statistically.Results A total of 2 403 cases of lung cancer were collected,including 1 766 males and 637 females.There was no significant difference in gender ratio between male and female in five years (x2 =8.481,P =0.075).There were 2 398 cases with age information,the male-to-female ratios of lung cancer patients aged less than 40,40-49,50-59,60-69,70-79,80 and over were 0.9 ∶ 1.0,1.4 ∶ 1.0,2.4 ∶ 1.0,3.6 ∶ 1.0,3.4 ∶ 1.0 and 3.3 ∶ 1.0 respectively,and the difference was statistically significant (x2 =59.004,P < 0.001).The composition difference of adenocarcinoma was not statistically significant in five years (x2 =2.165,P =0.705).There was no statistically significant difference in the composition ratio of squamous cell carcinoma (x2 =4.788,P =0.310).Adenocarcinoma accounted for 43.15% (762/1 766) and 81.95% (522/637) of the pathological types of male and female patients respectively,and the difference was statistically significant (P < 0.001).Squamous cell carcinoma accounted for 39.01% (689/1 766) and 7.28% (47/637) respectively,and the difference was statistically significant (P < 0.001).The proportion of squamous cell carcinoma in smoking patients was 42.99% (583/1 356),which was significantly higher than that in non-smoking patients (14.61%,153/1 047);the proportion of squamous cell carcinoma in drinking patients was 40.56% (277/683),which was higher than that in nondrinking patients (26.69%,459/1 720),and the differences were statistically significant (both P < 0.001).A total of 1 252 patients underwent surgery,accounting for 52.10% (1 252/2 403) of the total cases.The surgical rate of small cell carcinoma was 21.72% (48/221),and that of non-small cell carcinoma was 55.18% (1 204/2 182).In five years,the surgical rates of lung cancer patients were 55.11% (221/401),51.53% (252/489),58.23% (244/419),53.18% (276/519) and 45.04% (259/575) respectively,and there was significant difference in the proportion of surgical and non-surgical patients in each year (x2 =19.553,P =0.001).A total of 483 patients were tested for E GFR mutation,the EGFR mutation rate was 58.8% (251/ 427) in adenocarcinoma patients and 15.6% (5/32) in squamous cell carcinoma patients.Among lung cancer patients aged less than 40,40-49,50-59,60-69,70-79,80 and over,the proportions of adenocarcinoma were 76.74% (33/43),62.39% (136/218),57.73% (381/660),47.95% (455/949),52.22% (235/450) and 52.56% (41/78) respectively,and the difference was statistically significant (x2 =33.078,P < 0.001);the proportions of squamous cell carcinoma were 9.30% (4/43),21.56% (47/218),28.03 % (185/660),34.14% (324/949),32.44% (146/450) and 35.90% (28/78) respectively,and the difference was statistically significant (x2 =26.977,P < 0.001).The difference of composition ratio of TNM staging was statistically significant in five years (x2 =21.003,P =0.034).Conclusion There has been no significant change of male-to-female ratio in patients with lung cancer in the past five years.With the increase of age,the male-to-female ratio increases first and then decreases.The proportion of adenocarcinoma and squamous cell carcinoma has not increased or decreased significantly in the past five years.Adenocarcinoma and squamous cell carcinoma are both common in male lung cancer patients,while the pathological type of female patients is mainly adenocarcinoma.Squamous cell carcinoma is highly prevalent in smokers and drinkers.The surgical rate of squamous cell carcinoma is higher than that of adenocarcinoma,and the surgical rate of non-small cell lung cancer is higher than that of small cell lung cancer.The EGFR mutation rate is higher in adenocarcinoma.With the increase of age,the proportion of adenocarcinoma in all pathological types tends to decrease,while that of squamous cell carcinoma tends to increase.The patients' TNM staging has a downward trend,and the operation rate decreases slightly.
9.miR-148b-3p, miR-190b, and miR-429 Regulate Cell Progression and Act as Potential Biomarkers for Breast Cancer
Wenzhu DAI ; Jixiang HE ; Ling ZHENG ; Mingyu BI ; Fei HU ; Minju CHEN ; Heng NIU ; Jingyu YANG ; Ying LUO ; Wenru TANG ; Miaomiao SHENG
Journal of Breast Cancer 2019;22(2):219-236
PURPOSE: Breast cancer is the most frequently diagnosed malignancy in women worldwide. MicroRNAs (miRNAs) are thought to serve as potential biomarkers in various cancers, including breast cancer. METHODS: We evaluated the miRNA expression profiles in 1,083 breast cancer samples and 104 normal breast tissues from The Cancer Genome Atlas database. We used the edgeR package of R software to analyze the differentially expressed miRNAs in normal and cancer tissues, and screened survival-related miRNAs by Kaplan-Meier analysis. A receiver operating characteristic curve was generated to evaluate the accuracy of these miRNAs as molecular markers for breast cancer diagnosis. Furthermore, the functional role of these miRNAs was verified using cell experiments. Targets of candidate miRNAs were predicted using 9 online databases, and Gene Ontology (GO) functional annotation and pathway analyses were conducted using Database for Annotation, Visualization and Integrated Discovery online tool. RESULTS: A total of 68 miRNAs showed significantly different expression patterns between the groups (p < 0.001), and 13 of these miRNAs were significantly associated with poor survival (p < 0.05). Three miRNAs with high specificity and sensitivity, namely, miR-148b-3p, miR-190b, and miR-429, were selected. In vitro experiments showed that the overexpression of these 3 miRNAs significantly promoted the proliferation and migration of MDA-MB-468 and T47D cells and reduced the apoptosis of T47D cells. GO and pathway enrichment analyses revealed that the targets of these dysregulated miRNAs were involved in many critical cancer-related biological processes and pathways. CONCLUSION: The miR-148b-3p, miR-190b, and miR-429 may serve as potential diagnostic and prognostic markers for breast cancer. This study demonstrated the roles of these 3 miRNAs in the initiation and progression of breast cancer.
Apoptosis
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Biological Phenomena
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Breast Neoplasms
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Gene Ontology
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Genome
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Humans
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In Vitro Techniques
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Kaplan-Meier Estimate
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MicroRNAs
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ROC Curve
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Sensitivity and Specificity
10.A bibliometric analysis of PBL teaching method
Sheng LI ; Xin YAN ; Zixin GUO ; Xiangyu MENG ; Jingyu HUANG
Chinese Journal of Medical Education Research 2018;17(11):1096-1102
Objective To systematically analyze the relevant literatures of problem-based learning (PBL) and to provide reference for further improvement and innovation. Methods Using bibliometric method and the package "tm" in R, we searched web of science database for PBL relevant literatures from inception to March 19 of 2018. Results A total of 5710 articles published in 77 journals had been collected. The results showed that PBL relevant literatures were increasing from 1976 to 2018. Most papers were published as article, with first authors from 84 countries of the world. The total citation of 5710 articles is 54768 and the average referenced times is 9.59. The research in those articles focused on medical education, health care sciences and engineering. Conclusions PBL has been widely used in various disciplines, especially in medical education. The research involves a wide range but the quality and depth of the study is still need to be improved.

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