1.HOPE solution: a new fixation method for lung tissue.
Jing-yan XIA ; Feng XU ; Yan-biao FU
Chinese Journal of Pathology 2008;37(11):787-788
Bacterial Proteins
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pharmacology
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Blotting, Western
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Humans
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Immunohistochemistry
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methods
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Interleukin-8
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genetics
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metabolism
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Internal Fixators
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Lung
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cytology
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drug effects
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Lung Diseases
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microbiology
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Pharmaceutical Solutions
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pharmacology
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Porins
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pharmacology
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RNA, Messenger
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analysis
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Reverse Transcriptase Polymerase Chain Reaction
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Solutions
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chemistry
3.Detection and identification of a new bat bocavirus species in Yunnan
Xingyu LI ; Gang CHEN ; Lele XIA ; Weiguo ZHOU ; Lin XU ; Jing YU ; Wei QIU ; Fuqiang ZHANG ; Quanshui FAN ; Changchun TU ; Tingsong HU ; Biao HE
Military Medical Sciences 2016;40(3):207-212,233
Objective To discover more novel bat viruses and molecularly characterize bat-borne bocavirus diversity in Yunnan.Methods Twenty-six Aselliscus stoliczkanus were sampled in Jinghong , Yunnan, and subjected to viral metagenomic analysis.Specific PCR was used to detect any bocavirus in these samples based on the metagenomic result , while full genome was amplified and compared with other bocaviruses .Results and Conclusion Totally, 3 of the 26 (11.5%) bats were positive for bocavirus, the full genome of which contained 5203 nucleotides and could encode NS1, NP and VP1/VP2 proteins.Phylogenetic analysis showed that this virus shared up to 58.7% and 53.3% amino acid identities with canine bocavirus 1 and canine minute virus .According to ICTV criteria (85%amino acid sequence identity ) on a new species of bocavirus , this virus could be a novel species within genus Bocaparvovirus .This study provides important data to better understand viral diversity in bats and to uncover the relationship between bocavirus and its hosts .
4.Establishment of fluorescent amplified fragment length polymorphism in Vibrio cholerae and evaluation in molecular typing.
Jing LOU ; Bao-wei DIAO ; Hong-xia WANG ; Zhi-gang CUI ; Guo-ming QI ; Biao KAN
Chinese Journal of Epidemiology 2007;28(6):580-585
OBJECTIVETo develop fluorescent amplified fragment length polymorphism (AFLP) method and to evaluate the its typing capability with pulsed-field gel electrophoresis (PFGE) in molecular typing of Vibrio cholerae.
METHODSForty-seven strains of V. cholerae, with different PFGE patterns, were selected as the reference group to optimize the selective primers of AFLP analysis. Eighty-three strains including 20 strains from one epidemic episode, isolated from different provinces during 1961 and 2005, were used to compare the typing abilities of AFLP and PFGE. LI-COR4300 DNA sequencing system was used for AFLP electrophoresis. The images were recorded by Saga(MX) software and transferred to BioNumerics for clustering analysis. A standard protocol for V. cholerae from PulseNet was used in PFGE.
RESULTSWhen comparison was made with different selective primers on AFLP based on the 47 strains, results showed that the optimized selective primer pair was EcoR I-G/Mse I-T, and the reproducibility of the tests was 99.2%. Eighty-three isolates showed 52 AFLP patterns and 44 PFGE patterns, with D values as 0.9545 (AFLP) and 0.9251 (PFGE) respectively.
CONCLUSIONThe protocol of fluorescent AFLP on V. cholerae typing was established. AFLP was higher than PFGE in discrimination of V. cholerae which could be used for molecular typing. When combined with PFGE, AFLP became a more insightful tool to identify genome difference of different isolates.
Amplified Fragment Length Polymorphism Analysis ; methods ; Electrophoresis, Gel, Pulsed-Field ; Genotype ; Phylogeny ; Vibrio cholerae ; classification ; genetics
5.Investigation of influence on apical sealability generated by root canal sealer placement.
Li-wei ZHENG ; Zhi-qiang ZHANG ; Yu-qing HAO ; Guo-biao YANG ; Ling-yun XIA ; Jing CHEN ; Xin-mei CHEN
West China Journal of Stomatology 2008;26(2):183-185
OBJECTIVETo investigate the influence of sealer placement on apical sealability in root canal treatment.
METHODS100 extracted single root canal teeth were selected. All canals were prepared by manual Protaper instrument in a step-back way. The samples were divided into 5 groups randomly. A group: 30 samples, sealer placement by chief gutta percha; B group: 30 samples, sealer placement by K file; C group: 30 samples, sealer placement by spreader; D group: 5 samples, a positive control; E group: 5 samples, a negative control. There were 2 subsets in each experimental group which were obturated by lateral gutta percha with or without sealer. Glucose oxidase method was used to measure the apical leakage at the 1st 2nd, 4th, 7th, 10th, 15th, 20th, 25th, 30th day of the experiment.
RESULTSApical sealability varied with different sealer placement methods (F=4.832, P=0.001). Sealer placement by chief gutta percha (A group) had the best instant apical sealability. However, lateral gutta percha with or without sealer didn't affect the apical sealibility.
CONCLUSIONPlacing the same kind sealer in different ways can affect the apical sealability. There were no significant differences of the apical leakage no matter the lateral gutta percha with or without sealer. In order to get better instant apical sealability and simplify the clinic operation, placing the sealer with a chief gutta percha while the lateral gutta percha without sealer is recommended.
Dental Leakage ; Dental Pulp Cavity ; Gutta-Percha ; Humans ; Root Canal Obturation ; Root Canal Preparation ; Zinc Oxide-Eugenol Cement
6.Surveillance program on and the distribution related to the virulence-associated genes of Vibrio cholerae in estuary of Pearl River
Bai-Sheng LI ; Duo-Chun WANG ; Hai-Ling TAN ; Bi-Xia KE ; Jing-Diao CHEN ; Dong-Mei HE ; Mei-Zhen LIU ; Xiao-Ling DENG ; Chang-Wen KE ; Biao KAN
Chinese Journal of Epidemiology 2011;32(12):1242-1246
Objective To understand the distribution,molecular characteristics and virulence genes of the O1 and O139 Vibrio cholerae isolates from the Pearl River Estuary water.Methods Vibrio cholerae isolates collected from the Pearl River estuary waters from January 2009 to December 2010,were tested by PCR for eight virulence-related genes,including cholera toxin(ctxA),zonula occludens toxin(zot),accessory cholera enterotoxin(ace),hemolysin(hlyA),toxin-coregulated pilus (tcpA),outer membrane protein(ompU),and the regulatory protein genes(tcpⅠ,toxR).Genetic relation was assessed by pulsed-field gel electrophoresis(PFGE)and the patterns were clustered by BioNumerics.Results From 1152 aquatic samples,69 isolates were identified,including 41 Inaba,18 Ogawa and 10 O139.All the isolates showed ctxA negative,while the hlyA and toxR genes were positive in all the isolates.34.15%(14/41)of the Inaba strains were hlyA + toxR + ompU + ace + zot + tcpI+,while 66.67%(12/18)belonged to Ogawa strains and 70%(7/10)of the O139 strains were hlyA + toxR+.Through PFGE analysis,the O1 isolates formed three clusters in this study.The patterns of O1 isolates differed widely,with the similarity as 72.8%-100.0%,while the patterns of O139 isolates having the similarity of 69.9%-95.5%.Conclusion The non-toxigenic O1 and O139 V.cholerae had a wide distribution in the environment of Pearl River estuary water during the nonepidemic period of cholera.All the aquatic isolates presented diversities on the related virulent genes.
7.Molecular typing of the pathogenic Yersinia enterocolitica strains with pulsed field gel electrophores isolated in China.
Dong JIN ; Zhi-gang CUI ; Yu-chun XIAO ; Xin WANG ; Feng GU ; Sheng-li XIA ; Wan-fu HU ; Jin-chuan YANG ; Hua WANG ; Ling GU ; Jian-Guo XU ; Biao KAN ; Huai-qi JING
Chinese Journal of Epidemiology 2006;27(8):677-680
OBJECTIVETo investigate the epidemiological and molecular typing features of the pathogenic Yersinia enterocolitica strains isolated in China,using pulsed field gel electrophoresis(PFGE) and standardized PFGE method as well as typing database of Yersinia enterocolitica.
METHODSPFGE analysis was performed as Laboratory Directions for molecular subtyping of Salmonella by PFGE (PulseNet,USA) with some modifications and the results of PFGE were analyzed by BioNumerics soft (Version 4.0, Applied Maths BVBA, Belium).
RESULTS114 O:3 Yersinia enterocolitica strains were typed by 25 patterns to have found that K6GN11C30012 (50 strains), K6GN11C30015(19 strains) and K6GN11C30016(10 strains) were the major patterns. K6GNllC30012 had 92.2% cluster similarity with K6GN11C30009-K6GN11C30023. This clone included 91.23% strains of 114 0:3 Yersinia enterocolitica strains. 51 0:9 Yersinia enterocolitica strains were typed by 14 patterns; K6GN11C90004 (22 strains) and K6GN11C90010 (13 strains)were the major patterns. K6GN11C90004 had 81.8% cluster similarity with K6GN11C90010 patterns. The major patterns of 0:3 and 0:9 serotypes were quite different.
CONCLUSIONO:3 Yersinia enterocolitica strains might originate from the same clone and had very few variation in different years and provinces but O:9 Yersinia enterocolitica strains from two different clones with some changes.
China ; Electrophoresis, Gel, Pulsed-Field ; Humans ; Yersinia enterocolitica ; classification ; genetics ; isolation & purification
8.Comparison of lipopolysaccharide and protein immunogens from pathogenic Yersinia enterocolitica bio-serotype 1B/O:8 and 2/O:9 using SDS-PAGE.
Wen Peng GU ; Xin WANG ; Hai Yan QIU ; Xia LUO ; Yu Chun XIAO ; Liu Ying TANG ; Biao KAN ; Jian Guo XU ; Huai Qi JING
Biomedical and Environmental Sciences 2012;25(3):282-290
OBJECTIVEYersinia enterocolitica is an extracellular pathogen and its related antigens interact with the host immune system. We investigated the difference in immunological characteristics between a highly pathogenic and poorly pathogenic strain of Y. enterocolitica.
METHODSWe used SDS-PAGE and western blotting to characterize lipopolysaccharide (LPS), Yersinia outer membrane proteins (Yops), membrane proteins, and whole-cell proteins from poorly pathogenic Y. enterocolitica bio-serotype 2/O:9, isolated from China, and highly pathogenic bio-serotype 1B/O:8, isolated from Japan.
RESULTSThese two strains of Y. enterocolitica had different LPS immune response patterns. Comparison of their Yops also showed differences that could have accounted for their differences in pathogenicity. The membrane and whole-cell proteins of both strains were similar; immunoblottting showed that the 35 kD and perhaps the 10 kD proteins were immunogens in both strains.
CONCLUSIONThe major antigens of the two strains eliciting the host immune response were the LPS and membrane proteins, as shown by comparing protein samples with reference and purified preparations.
Animals ; Antigens, Bacterial ; genetics ; metabolism ; Bacterial Proteins ; genetics ; metabolism ; Blotting, Western ; Electrophoresis, Polyacrylamide Gel ; Female ; Gene Expression Regulation, Bacterial ; physiology ; Lipopolysaccharides ; metabolism ; Rabbits ; Yersinia enterocolitica ; classification ; metabolism
9.Surveillance on severe acute respiratory syndrome associated coronavirus in animals at a live animal market of Guangzhou in 2004.
Ming WANG ; Huai-qi JING ; Hui-fang XU ; Xiu-gao JIANG ; Biao KAN ; Qi-yong LIU ; Kang-lin WAN ; Bu-yun CUI ; Han ZHENG ; Zhi-gang CUI ; Mei-ying YAN ; Wei-li LIANG ; Hong-xia WANG ; Xiao-bao QI ; Zhen-jun LI ; Ma-chao LI ; Kai CHEN ; En-min ZHANG ; Shou-yin ZHANG ; Rong HAI ; Dong-zheng YU ; Jian-guo XU
Chinese Journal of Epidemiology 2005;26(2):84-87
OBJECTIVETo study the prevalence of severe acute respiratory syndrome coronavirus (SARS-CoV) like virus in animals at a live animal market of Guanzhou in 2004 before and after culling of wild animal action taken by the local authority, in order to predict the re-emerging of SARS from animal originals in this region.
METHODSAnimals at live animal market were sampled for rectal and throat swabs in triplicate. A single step realtime reverse transcription-polymerase chain reaction (RT-PCR) diagnostic kit was performed for screening SARS-CoV like virus, the manual nested RT- PCR and DNA sequencing were performed for confirmation. Only specimens which tested positive for both of the N and P genes by nested RT-PCR were scored as positive.
RESULTSIn 31 animals sampled in January 5 2004 before culling of wild animals at Guangdong Province, including 20 cats (Felis catus), 5 red fox (Vulpes vulpes) and 6 Lesser rice field rats (Rattus losea), 8 (25.8%) animals were tested positive for SARS-CoV like virus by RT-PCR methods, of which 4 cats, 3 red fox and one Lesser rice field rats were included. However, two weeks after culling of animals and disinfection of the market were implemented, in 119 animals sampled in January 20 2004, including 6 rabbits (Oryctolagus cuniculus), 13 cats, 46 red jungle fowl (Gallus gallus), 13 spotbill duck (Anas platyrhynchos), 10 greylag goose (Anser anser), 31 Chinese francolin (Franclinus pintadeanus), only rectal swab from one greylag goose was tested positive for SARS-CoV like virus. Furthermore, in 102 animals that including 14 greylag gooses, 3 cats, 5 rabbits, 9 spotbill duck (Anaspoecilorhyncha), 2 Chinese francolin (Franclinus pintadeanus), 8 common pheasant (Phasianus colchicus), 6 pigeons, 9 Chinese muntjac (Muntiacus reevesi), 19 wild boar (Sus scrofa), 16 Lesser rice field rats, 5 dogs, 1 mink (Mustela vison), 3 goats, 2 green peafowl (Pavo muticus) sampled in April, May, June, July, August and November, only rectal swab from one pig was tested positive. However, of 12 and 10 palm civets sampled in November and December including five of which had been at the live animals market for 2 days, none of them was tested positive.
CONCLUSIONThis findings revealed that animals being sampled in April, May, June, July, August and November of 2004, only one rectal swab from a pig was tested positive as SARS-CoV like virus, much lower than the results from the previous year, suggesting that the possibility of re-emerging of human infection from animal origins is low for the winter of 2004-2005.
Animals ; Animals, Wild ; virology ; China ; DNA, Viral ; analysis ; Felidae ; virology ; Reverse Transcriptase Polymerase Chain Reaction ; SARS Virus ; isolation & purification
10.Development of national neglect norm for urban primary school students of China.
Jian-ping PAN ; Fei WANG ; Min LI ; Jing-qi CHEN ; Hui-ying ZHANG ; Gui-xiang WANG ; Gui-xiong GU ; Wei-wei GUO ; Yu-lin PENG ; Shu-hua SHI ; Guang-hu CHEN ; Hua-ni YI ; Ping FU ; Li XIA ; Hong YU ; Biao LU ; Zhi-xian DUAN ; Ying-xiong WANG ; Zhao-hui ZHONG ; Jian LI ; Lin WANG ; Chun-hong CAO ; Sha-sha LUO ; Song-jie ZHANG ; Hua ZHANG
Chinese Journal of Preventive Medicine 2013;47(2):129-134
OBJECTIVETo develop the national neglect norms for urban primary school students in China.
METHODSAccording to multi-stage stratified cluster sampling principle, 24 cities of 13 provinces (municipalities) in China were selected during December 1 to 31, 2008. A total of 1491 students in grade 1 - 3 and 2236 students in grade 4 - 6 were selected. Questionnaire was designed by authors and the final norms were determined through several statistical analysis methods, such as item analysis method, factor analysis method, reliability analysis method. The reliability analysis and validity analysis were used to test the stability and reliability of the norms. The evaluation criteria of the scale was determined by the percentile method, then the initial development of the norm was completed.
RESULTSThe two questionnaires of grade 1 - 3 and grade 4 - 6 students consisted of 55 and 57 items, respectively, whose item loadings were ranged from 0.301 to 0.687 and 0.321 to 0.730, which met the statistical requirements. For grade 1 - 3 students, the scale's total Cronbach α coefficients was 0.914, the total split-half reliability coefficients was 0.896, the Cronbach α coefficients of four level was above 0.737 except medical and social neglect, split-half reliability was ranged from 0.461 to 0.757; for grade 4-6 students, the scale's total Cronbach α coefficients was 0.916, split-half reliability was 0.883, except social neglect, the Cronbach α coefficients of other level was ranged 0.457 to 0.856, split-half reliability was ranged from 0.500 to 0.798. The total neglect cut-off score of the two scales grade 1-3 and 4-6 were 125 and 155, respectively.
CONCLUSIONThe structure of two norms was reasonable. The scales have good stability and reliability.
Child ; Child Abuse ; prevention & control ; statistics & numerical data ; China ; epidemiology ; Female ; Humans ; Male ; Reproducibility of Results ; Schools ; Students ; Surveys and Questionnaires