1.Progress of new biological markers based on proteomic approaches in colon cancer
Jiaoli ZHANG ; Xiaofang JIA ; Jianxin LYU ; Lijun ZHANG
Journal of International Oncology 2014;41(10):771-774
Colon cancer is the most common malignant tumor in the worldwide scale and it is one of the leading causes of cancer-related deaths.Finding accurate and informative cancer markers will provide significant insights in diagnosis and treatment strategy of colon cancer.Proteomic technology is an important tool in cancer research.In recent years,many studies have found a great of potential biomarkers of colon cancer.
2.Molecular cloning and expression of OspC protein of a Chinese Borrelia afzelli FP1 strain and pre-liminary study on the immune protectivity of the rOspC protein
Huixin LIU ; Qin HAO ; Xuexia HOU ; Lin ZHANG ; Wei LIU ; Yongliang LOU ; Jianxin LYU ; Kanglin WAN
Chinese Journal of Microbiology and Immunology 2015;(8):573-576
Objective To clone and express the outer surface protein C ( OspC) from a Chinese Borrelia afzelli FP1 strain and to evaluate the immune protectivity of the recombinant OspC protein ( rOspC) . Methods The gene encoding OspC protein of Borrelia afzelli FP1 strain was amplified by polymerase chain reaction (PCR) and then inserted into pET-30a plasmid to construct the recombinant expression plasmid pET-30a-OspC. The transformed E. coli BL21 strains carrying pET-30a-OspC plasmid were induced by IPTG to express OspC protein. The expressed proteins were purified by Ni-IDA resin chromatography and analyzed by SDS-PAGE and Western blot assay. Indirect immunofluorescence assay ( IFA) was performed to detect anti-rOspC protein antibodies in serum samples from rabbits immunized with rOspC protein. In vitro neutral-ization test was performed for evaluation the immune protectivity of rOspC protein. Results The recombi-nant expression plasmid pET-30a-OspC was successfully constructed and highly expressed in E. coli BL21. A strong antigen-antibody reaction between the rOspC protein and polyclonal antibody against Borrelia afzelli FP1 strain was detected by Western blot assay. The titers of IgG in serum samples from rabbits immunized with rOspC protein were significantly elevated. The in vitro neutralization test indicated that 106/ml of Borre-lia afzelli FP1 strains were neutralized by every anti-OspC protein serum sample from the experiment group. Conclusion The rOspC protein showed a strong immune protectivity against Borrelia afzelli, which could be used in the development of polyvalent subunit vaccine against lyme disease.
3.Mechanism Study of Xiaoyao San in Improving Depression-Like Behavior of Rats by Regulation of Hepatic Sinusoidal Endothelial Function
Zhaohui TAN ; Shuxin SHEN ; Linlin JING ; Jianxin DIAO ; Xuegang SUN ; Xiaoxia ZHU ; Zhiping LYU
Journal of Guangzhou University of Traditional Chinese Medicine 2015;(4):705-710
Objective To observe the effectiveness and mechanism of Xiaoyao San (Xiaoyao Powder for Soothing Liver and Relieving Depression) in improving depression-like behavior of rats. Methods Male Wistar rats were randomized into normal group, model group, Xiaoyao San (1.9 g·kg-1·d-1) group, and fluoxetine (2 mg·kg-1·d-1) group. The rats were exposed to chronic unpredictable mild stress ( CUMS) to induce rat depression-like behavior. Field test was performed for the observation of effect of Xiaoyao San on rat depression-like behavior, Luminex liquid chip system was applied to detect the serum cytokines, and the amount and size of rat hepatic sinusoidal endothelial window were examined under electron microscope, and hepatic indoleamine 2, 3-dioxygenase ( IDO) and tryptophan 2, 3 -dioxygenaes ( TDO) expression levels were detected by immunohistochemical and Western blot methods. Results Xiaoyao San showed obvious effect on increasing sugar water consumption, the number of crossing the blocks and erection frequency in rats, decreasing serum levels of tumor necrosis factor alpha ( TNF-α) and interleukin 6 ( IL-6) , increasing the amount of hepatic sinusoidal endothelial window, promoting hepatic sinusoidal endothelial vascularization, and reducing TDO and IDO expression ( P<0.05 or P<0.01). Conclusion Xiaoyao San exerts obvious effect on improving rat depression-like behaviors, and the mechanism is probably related with the decrease of inflammatory factors, inhibition of IDO pathway, and improvement of hepatic sinusoidal endothelial function.
4.Diagnosis of common blood stream infection pathogens based on central homo-sequence primer by multiplex PCR combined with MALDI-TOF MS
Yue CHANG ; Yu WANG ; Yanning MA ; Jiyong YANG ; Chengbin WANG ; Jianxin LYU
Chinese Journal of Laboratory Medicine 2021;44(5):413-420
Objective:Based on the high-throughput detection technique of multiplex PCR combined with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, constructing the characteristic SNP profiles of different strains, and establishing a rapid, accurate and highly sensitive method for the diagnosis of bloodstream infection pathogens.Methods:Seven kinds of pathogens such as common Escherichia coli were selected as target. The multiple PCR reaction conditions was optimized, and the characteristic peaks of each target bacteria were detected by MALDI-TOF MS to establish the joint detect system. Common primer pairs and central homo-sequence primer pairs were designed to analyse the formation of primer dimer. Using simulated bacterial infection blood samples with detection system to determine specificity and sensitivity. One hundred and fifty blood samples from suspected bacteremia patients were collected from June to September 2020 in a hospital in Beijing, and the identification results were compared to traditional identification method of clinical application that are using χ 2 test. Results:The cycle threshold (Ct) value of the central homo-sequence primers that were designed were more than 38, with a delay of 6-10 cycles. The joint mass spectrometry detection system could detect seven kinds of bacteria divided into two groups at the same time. The target bacteria can be detected specific product of the peak, and the clinical strains other than the target strains only had primer peaks. All maps had non-specific miscellaneous peaks. The sensitivity of Escherichia coli could reach 50 CFU/ml, and the detection limit of other bacteria was 100 CFU/ml. The detection results of 150 patients showed that 46 cases were positive by traditional method. The positive rate was 30.67% (46/150), including two cases of mixed infection. Forty-eight cases were positive by mass spectrometry, and the positive rate was 32.0% (48/150), including three cases of mixed infections. The negative coincidence rate was 100% (101/101). The comparison of the two methods showed that the P=0.625>0.01, the Kappa=0.938, the sensitivity and specificity was 97.82%(45/46) and 97.11%(101/104), respectively. There was no significant difference between the two methods, and the results of nucleic acid mass spectrometry could also be used in clinic. Conclusions:The established detection system can not only quickly and accurately detect seven common pathogens causing bloodstream infection, and effectively shorten the time needed for traditional culture and identification, but also can detect multiple bacterial mixed infections at the same time to make up for the possibility of missed detection. Besides, the method can also be used to identify other bacteria.
5.Effect of mitochondrial DNA 5178 C/A polymorphism on risks for type 2 diabetes mellitus and its complications.
Xunjun YANG ; Yuning ZHANG ; Yin MA ; Qiongya ZHAO ; Jianxin LYU
Chinese Journal of Medical Genetics 2015;32(6):855-860
OBJECTIVETo explore the role of mitochondrial DNA 5178 C/A (Mt5178) polymorphism of NADH-dehydrogenase subunit 2 (ND2) gene in type-2 diabetes mellitus (T2DM) among ethnic Han Chinese through a case-control study.
METHODSThe Mt5178C/A polymorphism was determined by sequencing 1103 T2DM patients and 791 healthy controls. Logistic regression analysis was conducted to estimate odds ratios (OR) and 95% confidence intervals (CI). To confirm the results, a meta-analysis was conducted based on published literature on the association of Mt5178 variant with T2DM.
RESULTSNo significant association was found between the Mt5178C/A variant and T2DM either by our study or the meta-analysis which included eight published studies. Nevertheless, it was found that the T2DM patients with 5178C genotype were at a higher risk for nephropathy complication (OR=1.49, 95%CI: 1.005-2.197, P<0.05) and at significantly lower risk for hypertension complication (OR=0.744, 95%CI: 0.556-0.996, P<0.05) compared with those carrying a 5178A genotype.
CONCLUSIONNo association was found between the Mt5178C/A polymorphism of mitochondrial ND2 gene with the increased risk of T2DM. However, the polymorphism may affect the development of nephropathy and hypertension complications among T2DM patients.
Adult ; Aged ; Blood Glucose ; metabolism ; Cholesterol ; blood ; Cholesterol, HDL ; blood ; DNA, Mitochondrial ; chemistry ; genetics ; Diabetes Complications ; blood ; genetics ; Diabetes Mellitus, Type 2 ; blood ; complications ; genetics ; Diabetic Nephropathies ; blood ; genetics ; Fasting ; blood ; Female ; Humans ; Hypertension ; blood ; complications ; genetics ; Male ; Meta-Analysis as Topic ; Middle Aged ; Odds Ratio ; Polymorphism, Single Nucleotide ; Sequence Analysis, DNA ; Triglycerides ; blood
6.Analysis of genome-wide copy number variations among fetuses with abnormalities detected by prenatal ultrasouography.
Ke WU ; Shaohua TANG ; Chong CHEN ; Huanzheng LI ; Lili ZHOU ; Jianxin LYU
Chinese Journal of Medical Genetics 2017;34(2):178-182
OBJECTIVETo explore the genetic etiology of fetal abnormalities detected by prenatal ultrasound through single nucleotide polymorphism (SNP array) analysis.
METHODSTwo hundred and eight fetuses were tested with SNP array and conventional karyotyping. Complex copy number variations (CNVs) were verified with fluorescence in situ hybridization (FISH), multiplex ligation-dependent probe amplification (MLPA) and quantitative fluorescence polymerase chain reaction (QF-PCR).
RESULTSFor the 208 cases, the diagnostic yields of conventional karyotping and SNP assay were 8.2%(17/208) and 13.9%(29/208), respectively. For fetuses with malformations of the cardiovascular system, central nervous system or multiple systems, pathogenic CNVs was detected in 4.6% (8/174), 2.3%(4/174), and 1.1% (2/174) of all fetuses, respectively. No pathogenic CNVs was detected among those with abnormalities of the renal system, digestive system, skeletal system, facial dysmorphism or respiratory system.
CONCLUSIONCNVs are significantly related with birth defects. Compared with conventional karyotyping, SNP array is a better platform for CNVs detection and can provide more clues for genetic counseling, recurrence risk assessment and prenatal diagnosis.
Adult ; Chromosome Aberrations ; DNA Copy Number Variations ; Female ; Fetal Diseases ; diagnosis ; diagnostic imaging ; genetics ; Genome-Wide Association Study ; Humans ; Infant, Newborn ; Karyotyping ; Male ; Polymorphism, Single Nucleotide ; Pregnancy ; Pregnancy Complications ; diagnosis ; diagnostic imaging ; genetics ; Prenatal Diagnosis ; Ultrasonography ; Young Adult
7.Analysis of TWNK variant in a family affected with Perrault syndrome.
Zihui CHEN ; Shaohua TANG ; Huanzheng LI ; Xueqin XU ; Jianxin LYU
Chinese Journal of Medical Genetics 2020;37(7):739-742
OBJECTIVE:
To explore the genetic etiology of two patients with Perrault syndrome (PRLTS) in a family.
METHODS:
Whole exome sequencing (WES) was carried out to screen potential variants within genomic DNA extracted from the proband. Suspected variants were validated by clinical data and results of Sanger sequencing.
RESULTS:
WES has identified two heterozygous variants of TWNK gene, namely c.1172G>A (p.Arg391His) and c.1844G>C (p.Gly615Ala). Sanger sequencing confirmed that the c.1172G>A (p.Arg391His), a known pathogenic variant, was derived from her father, while the c.1844G>C (p.Gly615Ala), a novel variant, was derived from her mother. Her brother, who was similarly affected, has carried the same compound heterozygous variants.
CONCLUSION
The compound heterozygous variants c.1172G>A (p.Arg391His) and c.1844G>C (p.Gly615Ala) of the TWNK gene probably underlie PRLTS in the sib pair. The above results have facilitated genetic counseling and prenatal diagnosis for the affected family.
8.Fibrinogen gamma-chain mutation, p.Ile171His, leads to hereditary hypofibrinogenemia
Jianxin LIU ; Chunjian WANG ; Juhua DAI ; Meixiang ZHANG ; Meng LYU ; Bin JIANG
Chinese Journal of Internal Medicine 2022;61(2):172-176
Objective:To explore the clinical phenotype and genotype of a family with hereditary hypofibrinogenemia.Methods:Activated partial thrombin time (APTT), prothrombin time (PT),thrombin time (TT) and thrombelastogram (TEG) were tested in all family members. Fibrinogen activity and antigen were detected by Clauss method and immunoturbidimetric method respectively. All exons and flanking sequences of fibrinogen FGA,FGB,FGG genes were analyzed by PCR, and the products were subjected to Sanger sequencing.Results:The proband represented prolonged PT and TT, low Fg activity and antigen, elevated K value and decreased Angle value in TEG. Other family members reported similar changes including proband′s father,daughter and son, and his elder brother and his niece. Exon 5 c.510_512 of FGG gene in the proband revealed a minor deletion mutation.Conclusion:The novel heterozygous missense mutation of exon 5 c.510_512del (Gln170_Ile171 del ins His) of FGG gene is the molecular mechanism that leads to hereditary hypofibrinogenemia in this family.
9.Application of EnCor vacuum-assisted biopsy system in the diagnosis and treatment for breast lesions
Jianxin LYU ; Min SHI ; Bo PAN ; Xiaojun WANG ; Luxian DAI ; Xiaohong YANG
Journal of Clinical Medicine in Practice 2014;(9):108-111
Objective To explore the value of ultrasound-guided EnCor vacuum-assisted biopsy system in the diagnosis and treatment of breast lesions.Methods 54 patients with breast le-sions were conducted with minimally invasive surgery by ultrasound-guided EnCor system,and the value of diagnosis and treatment of minimally invasive surgery for breast lesions was evaluated.Re-sults All of breast lesions were removed by minimally invasive surgery.In postoperative pathologi-cal diagnosis,51 cases were benign,and 3 cases were breast cancer.No active bleeding or wound infection was observed in all patients,and subcutaneous ecchymosis was found in one case, hematoma in one case,bloody nipple discharge in one case.3 months later,there was no postopera-tive incision scar;the breast maintained the normal contour,and skin sensitivity had no change in all postoperative patients.Conclusion Ultrasound-guided EnCor vacuum-assisted biopsy system is safe and reliable,and it can be used as a preferred method for patients with resection and biopsy of breast lesions or patients with suspicious breast cancers.
10.Application of EnCor vacuum-assisted biopsy system in the diagnosis and treatment for breast lesions
Jianxin LYU ; Min SHI ; Bo PAN ; Xiaojun WANG ; Luxian DAI ; Xiaohong YANG
Journal of Clinical Medicine in Practice 2014;(9):108-111
Objective To explore the value of ultrasound-guided EnCor vacuum-assisted biopsy system in the diagnosis and treatment of breast lesions.Methods 54 patients with breast le-sions were conducted with minimally invasive surgery by ultrasound-guided EnCor system,and the value of diagnosis and treatment of minimally invasive surgery for breast lesions was evaluated.Re-sults All of breast lesions were removed by minimally invasive surgery.In postoperative pathologi-cal diagnosis,51 cases were benign,and 3 cases were breast cancer.No active bleeding or wound infection was observed in all patients,and subcutaneous ecchymosis was found in one case, hematoma in one case,bloody nipple discharge in one case.3 months later,there was no postopera-tive incision scar;the breast maintained the normal contour,and skin sensitivity had no change in all postoperative patients.Conclusion Ultrasound-guided EnCor vacuum-assisted biopsy system is safe and reliable,and it can be used as a preferred method for patients with resection and biopsy of breast lesions or patients with suspicious breast cancers.