1.Study of the relationship between the quality of head nurses and nursing quality in our hospital
Lihua GENG ; Ling ZHANG ; Jianing LI
Chinese Journal of Hospital Administration 1996;0(07):-
Objective To explore the relationship between the quality of head nurses and nursing quality. Methods Analyses of data were conducted by means of linear regression analysis and stepwise linear regression analysis. Results In the regression analysis of the overall quality of head nurses and nursing quality, t=2 974,P
2.Gene expression profiling in porcine fetal thymus.
Yanjiong CHEN ; Shengbin LI ; Lin YE ; Jianing GENG ; Yajun DENG ; Songnian HU
Genomics, Proteomics & Bioinformatics 2003;1(2):171-172
To obtain an initial overview of gene diversity and expression pattern in porcine thymus, 11,712 ESTs (Expressed Sequence Tags) from 100-day-old porcine thymus (FTY) were sequenced and 7,071 cleaned ESTs were used for gene expression analysis. Clustered by the PHRAP program, 959 contigs and 3,074 singlets were obtained. Blast search showed that 806 contigs and 1,669 singlets (totally 5,442 ESTs) had homologues in GenBank and 1,629 ESTs were novel. According to the Gene Ontology classification, 36.99% ESTs were cataloged into the gene expression group, indicating that although the functional gene (18.78% in defense group) of thymus is expressed in a certain degree, the 100-day-old porcine thymus still exists in a developmental stage. Comparative analysis showed that the gene expression pattern of the 100-day-old porcine thymus is similar to that of the human infant thymus.
Animals
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Computational Biology
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Expressed Sequence Tags
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Fetus
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metabolism
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Gene Expression Profiling
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Genetic Variation
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Sequence Analysis, DNA
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Sus scrofa
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genetics
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metabolism
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Thymus Gland
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metabolism
3.A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome(Ochotona curzoniae)
Geng JIANING ; Li KEXIN ; Zhang YANMING ; Hu SONGNIAN
Genomics, Proteomics & Bioinformatics 2010;8(1):72-76
A microsatellite-enriched library of plateau pika(Ochotona curzoniae)was constructed according to the strong affinity between biotin and streptavidin.Firstly,genomic DNA was fragmented by ultrasonication,which is a major improvement over traditional methods.Linker-ligated DNA fragments were hybridized with biotinylated microsatellite probes,and then were subjected to streptavidin-coated magnetic beads.PCR amplification was performed to obtain double-stranded DNA fragments containing microsatellites.Ligation and transformation were carried out by using the pGEM-T Vector System Ⅰ and Escherichia coli DH10B competent cells.Sequencing results showed that 80.2% of clones contained microsatellite repeat motif.Several modifications make this protocol time-efficient and technically easier than the traditional ones; particularly,composition and relative abundance of microsatellite repeats in plateau pika genome were truly represented through the optimized PCR conditions.This method has also been successfully applied to construct microsatellite-enriched genomic libraries of Chinese hamster(Cricetulus griseus)and small abalone[Haliotis diversicolor(Reeve)]with high rates of positive clones,demonstrating its feasibility and stability.
4.The Association Between H3K4me3 and Antisense Transcription
Cui PENG ; Liu WANFEI ; Zhao YUHUI ; Lin QIANG ; Ding FENG ; Xin CHENGQI ; Geng JIANING ; Song SHUHUI ; Sun FANGLIN ; Hu SONGNIAN ; Yu JUN
Genomics, Proteomics & Bioinformatics 2012;10(2):74-81
Histone H3 lysine 4 trimethylation (H3K4me3) is well known to occur in the promoter region of genes for transcription activation.However,when investigating the H3K4me3 profiles in the mouse cerebrum and testis,we discovered that H3K4me3 also has a significant enrichment at the 3' end of actively transcribed (sense) genes,named as 3′-H3K4me3.3′-H3K4me3 is associated with ~15% of protein-coding genes in both tissues.In addition,we examined the transcriptional initiation signals including RNA polymerase II (RNAPII)binding sites and 5′-CAGE-tag that marks transcriptional start sites.Interestingly,we found that 3′-H3K4me3 is associated with the initiation of antisense transcription.Furthermore,3′-H3K4me3 modification levels correlate positively with the antisense expression levels of the associated sense genes,implying that 3′-H3K4me3 is involved in the activation of antisense transcription.Taken together,our findings suggest that H3K4me3 may be involved in the regulation of antisense transcription that initiates from the 3′ end of sense genes.In addition,a positive correlation was also observed between the expression of antisense and the associated sense genes with 3'-H3K4me3 modification.More importantly,we observed the 3'-H3K4me3 enrichment among genes in human,fruitfly and Arabidopsis,and found that the sequences of 3'-H3K4me3-marked regions are highly conserved and essentially indistinguishable from known promoters in vertebrate.Therefore,we speculate that these 3'-H3K4me3-marked regions may serve as potential promoters for antisense transcription and 3′-H3K4me3 appear to be a universal epigenetic feature in eukaryotes.Our results provide a novel insight into the epigenetic roles of H3K4me3 and the regulatory mechanism of antisense transcription.
5.How much exposure dose does a patient receive in PET/CT examination?
Chinese Journal of Radiological Health 2023;32(1):87-91
Positron emission tomography/computed tomography (PET/CT) scanner is an irreplaceable instrument in clinical diagnosis. The exposure dose that a patient receives is the sum of the doses caused by PET and CT examination. This study discussed the exposure dose level that a patient received during PET/CT examination according to the research data. Like other radiological diagnostic methods, PET/CT examination brings benefits outweighing its radiation risk. It is not advisable to exaggerate or ignore the exposure dose. The patient’s exposure dose caused by PET/CT examination should be controlled as much as possible under the premise of meeting clinical needs.
6.Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea
Liang YUAN ; Lu DENGXUE ; Wang SEN ; Zhao YUHUI ; Gao SHENGHAN ; Han RONGBING ; Yu JUN ; Zheng WEILI ; Geng JIANING ; Hu SONGNIAN
Genomics, Proteomics & Bioinformatics 2020;18(3):341-351
Agrocybe cylindracea, an edible mushroom, is widely cultivated for its abundance of nutrients and flavor, and many of its metabolites are reported to have beneficial roles, such as medicinal effects on tumors and chronical illnesses. However, the lack of genomic information has hindered further molecular studies on this fungus. Here, we present a genome assembly of A. cylindracea together with comparative genomics and pathway analyses of Agaricales species. The draft, generated from both next-generation sequencing (NGS) and single-molecule real-time (SMRT) sequencing platforms to overcome high genetic heterozygosity, is composed of a 56.5 Mb sequence and 15,384 predicted genes. This mushroom possesses a complex reproductive system, including tetrapolar heterothallic and secondary homothallic mechanisms, and harbors sev-eral hydrolases and peptidases for gradual and effective degradation of various carbon sources. Our pathway analysis reveals complex processes involved in the biosynthesis of polysaccharides and other active substances, including B vitamins, unsaturated fatty acids, and N-acetylglucosamine. RNA-seq data show that A. cylindracea stipes tend to synthesize carbohydrate for carbon seques-tration and energy storage, whereas pilei are more active in carbon utilization and unsaturated fatty acid biosynthesis. These results reflect diverse functions of the two anatomical structures of the fruiting body. Our comprehensive genomic and transcriptomic data, as well as preliminary compar-ative analyses, provide insights into the molecular details of the medicinal effects in terms of active compounds and nutrient components.