1.Modeling and Analysis of Genetic Regulatory Networks Based on Petri Net
Jialiang HUANG ; Hong GUO ; Chun MENG
Progress in Biochemistry and Biophysics 2006;0(04):-
With the success of the human genomic project, the amount of experimental data is increasing rapidly. In the post-genomic era, the focus is now shifting to the so called "from the sequence to the function", i.e., in addition to completing genome sequences, it is possible to learn about gene expression patterns and protein interactions on the genomic scale. Description and analysis of complex Genetic Regulatory Networks (GRN) is a critical problem for biologists to understand genetic regulatory mechanism. Most of existing methods ignore the synergistic effects observed widely in biologic systems. Thus there should be some errors between the predictions of the model and the actual biologic behaviors. To address this problem, a new quantitative analysis approach for genetic regulatory networks was proposed in the context of Hybrid Functional Petri Net (HFPN). Firstly, basic theory of GRN and HFPN was presented briefly. Petri-net-based models have been widely adopted for studying biological systems since Petri net has graphical modeling representation and strict mathematic background. In GRN, the combined effect of transcription factors to induce or repress gene transcription is usually different from the simple sum of their individual effects. This is so called Synergistic effect. Two kinds of new elements, logic places and logic transitions were introduced to describe the logic rules in GRN and the synergy between transcription factors. It was decided to extend existing tools instead of writing new software in order to have more time for the experimental part of this project. A Petri Net Workbench was developed based on the Open Source project the Petri Net Kernel (PNK) and the Systems Biology Workbench (SBW) during this project. The Petri Net Workbench was extended by the following features: the extended definition of Hybrid Functional Petri Net, the Ordinary Differential Equations (ODEs) solver, Systems Biology Markup Language (SBML) support and time course simulation. Finally, a Petri net model for the genetic regulatory network of the sea urchin endo16 gene was developed base on the GRN model published in literature and a list of quantitative outputs for different mutations was predicted. The analysis result corresponded to the experimental data published in literature properly and demonstrated the correctness of the Petri net model. It demonstrated how Hybrid Functional Petri net analysis techniques can be applied to Genetic Regulatory Networks. The new concepts of logic places and logic transitions had been proven to be useful for describe the logic rules in GRN and the synergy between transcription factors.
2.Study on the interference from radiation to the arterial response of injury
Jialiang MAO ; Dingjiu HUANG ; Yanshen BEN
Chinese Journal of Interventional Cardiology 1993;0(02):-
Objective This study was to evaluate the effects of endovascular irradiation on the proliferation response of injured artery Methods The bilateral iliac arteries of thirty normal fed New Zealand white rabbits were injured by balloon overdilatation (balloon to artery ratio was 1 54∶1) In one iliac artery endovascular irradiation was carried out by a perfusion balloon inflated with 32 P solution The contralateral iliac artery served as an intraanimal control Three doses schedules were studied: 10Gy, 20Gy and 40Gy, 10 rabbits per group Digital angiographic image was made before and after balloon overdilatation as well as at the end of 4 week follow up Subsequently, the iliac arteries injured were excised to be stained with weigert massion for hisopathologic analysis Results The iliac arteries injury of three group rabbits showed certain stenosis at the end of 4 week follow up ( P 0 05) Histopathologic analysis of irradiated arteries exhibited the decreased neointimal proliferation compared with the control both in 20Gy and 40Gy high dose radiation groups ( P 0 05) Conclusion The experimental restenosis like model can be established using overstretch balloon to injure the iliac artery of normal diet rabbit The dose from 20Gy to 40Gy of endovascular irradiation inhibited neointimal proliferation after artery injury The improvement of arterial stenosis was not observed
3.Study on the correlation between oxidative stress and diabetic complications
Yihua GUO ; Jialiang XIANG ; Biyun HUANG
Chinese Journal of Primary Medicine and Pharmacy 2010;17(17):2352-2353
Objective To explore the correlation between oxidative stress and the occurrence and progression of diabetic complications in the patients with diabetes. Methods The content of 24 h urinary 8-hydroxy-deoxyguanosine (8-OhdG) in diabetes mellitus (DM) group, diabetic nephropathy (DN) group, diabetic retinopathy (DR)group, diabetic foot(DF) group, diabetic neuropathy (DNP) group and control group were detected, and analyzed. Results The content of 24 h 8-OhdG in DM group, DN group, DR group, DF group, DNP group were significantly higher than that in the control group (P < 0.01), and that in DN group, DR group, DF group, DNP group were significantly higher than that in DM group(P < 0. 01), but the content of 24 h 8-OhdG among DN group, DR group, DF group and DNP group was not statistically signiticant(P >0. 05). Conclusion The correlation between the occurrence of diabetic and its complications oxidative stress and the Ievel of oxidative stress in the body was positive related.
4.CT and MRI imagings of intracranial chondromas
Yisheng LIU ; Jialiang SHEN ; Cihua HUANG
Journal of Practical Radiology 2014;(4):571-574
Objective To analyse CT and MRI features of intracranial chondromas and review the literatures.9 cases of intracra-nial chondromas confirmed by operation and pathology were presented.Methods Among 9 cases,cerebral CT scan was performed in 8 cases(8/9),MRI scan in 4 cases(4/9)with spin-echo T1 WI,T2 WI,FLAIR,DWI sequences and enhanced T1 WI sequences.Results The lesions located at the skullbase in 8 cases,the dural convexity in 1 case.CT showed that the lesions were spot,strip or arc of fringe calcifications in 8 cases.MRI showed that the lesions were inhomogeneous low and moderate signal intensity on T1 WI and in-homogeneous high and moderate signal intensity on T2 WI in 4 cases(4/4).Multinodular or lobed high signal intensity was seen on T2 WI in 2 cases(2/4),coralline septal moderate signal intensity was seen on T2 WI ,which was obvious enhancement after adminis-tration of contrast medium on T1 WI in 2 cases(2/4),the envelope of the lesions was also obvious enhancement in 4 cases.Conclu-sion CT and MRI features of intracranial chondromas are marked.The MRI features of intracranial chondromas can reflect its path-ologic and histologic characteristics.
5.Effects of radiation from ~(188) Re on smooth muscle cell proliferation
Xiaoqing REN ; Dingjiu HUANG ; Gang HUANG ; Jialiang MAO
Chinese Journal of Pathophysiology 2000;0(12):-
AIM: Although endovascular radiotherapy inhibits neointimal hyperplasia, the exact alterations induced by ?-particles irradiation remain to be elucidated. The objective of this study was to investigate the ability and the cellular mechanism of local ?-particles emission from 188 Re to inhibit vascular smooth muscle cells (SMCs).METHODS: The SMCs in vitro were irradiated by 188 Re with single doses of 2.6 Gy-25.8 Gy. The effects of ?-particles on SMCs, such as effective irradiate doses, the period of inhibition for SMCs proliferation, the changes of cell proliferation rate and DNA synthesis rate, cell cycle progression and related gene expression, were investigated by cell count,-TdR incorporation, cell cycle progression analysis, cell viability and immunocytochemistry, respectivecy.RESULTS: ?-particles irradiation with dose of 5.2 Gy could inhibit significantly SMCs proliferation. At dose of 20.6 Gy DNA synthesis inhibitory rate was 92%, SMCs proliferation rate was only 3%. Renoval of 188 Re did not abolish the inhibitory effects of ?-particles on SMCs proliferation. The expression of P53 was up regulation and PCNA was down regulation after irradiation. CONCLUSION: ?-particles from 188 Re was significantly effective and permanent in inhibiting SMCs proliferation, and inhibitory effect was in dose-dependet manner ED50 was 5 Gy, the best dose to inhibit SMCs proliferation was 20 Gy. ?-particles irradiation induced SMCs to occur G 0/G 1 arrest, damaged the ability of SMCs reproliferation and led to cell clonogenic death. P53 and PCNA had regulatiory effects on SMCs proliferation after ?-particles irradiation.
6.Clustering of risk factors among residents at high risk of cardiovascular diseases in Shaoxing City
HUANG Wen ; TANG Jialiang ; CHEN Kangkang ; HUANG Mingang ; CHEN Qifeng
Journal of Preventive Medicine 2023;35(4):298-302
Objective:
To investigate the clustering of risk factors among populations at high risk of cardiovascular diseases in Shaoxing City, Zhejiang Province, so as to provide the evidence for formulating the cardiovascular disease control measures among populations at high risk of cardiovascular diseases.
Methods:
The populations with hypertension, diabetes, dyslipidemia and a history of cardio-cerebrovascular disease at ages of 35 to 70 years were sampled from 6 districts (counties) of Shaoxing City using a multi-stage cluster random sampling method from May to July 2021. Participants' demographics, history of disease, smoking, alcohol consumption and drug use were collected through questionnaires, and height, body weight and blood lipid were measured. The participants at high risk of cardiovascular diseases were enrolled, and the prevalence and clustering of five risk factors were investigated, including current smoking, current alcohol consumption, overweight/obesity, never exercise and daily sedentary duration of 3 hours and longer. Factors affecting the clustering of risk factors were identified with an ordinal logistic regression model.
Results:
Totally 1 695 participants were enrolled, including 940 men (55.46%) and 755 women (44.54%), with a mean age of (62.56±6.08) years old. There were 213 participants with a history of cardio-cerebrovascular disease (12.57%), and the prevalence of hypertension, diabetes and dyslipidemia was 78.53%, 61.95% and 46.78%, respectively, and there were 32.63% of participants with current smoking, 35.99% with current alcohol consumption, 49.38% with overweight/obesity, 62.12% with never exercise and 61.24% with daily sedentary duration of 3 hours and longer, respectively. There were 28.85% of participants with two risk factors, and 46.90% with three to five risk factors. Ordinal logistic regression analysis showed that male (OR=5.430, 95%CI: 4.389-6.726), and development of hypertension (OR=1.655, 95%CI: 1.313-2.090) led to present more numbers of clustering of risk factors, and annual household income of 20 000 to 50 000 Yuan (OR=0.620, 95%CI: 0.473-0.812), a history of cardio-cerebrovascular diseases (OR=0.430, 95%CI: 0.324-0.572), presence of diabetes (OR=0.592, 95%CI: 0.476-0.736) led to less numbers of clustering of risk factors among populations at high risk of cardiovascular diseases.
Conclusions
There is clustering of risk factors among populations at high risk of cardiovascular diseases in Shaoxing City. Men, income, history of cardio-cerebrovascular diseases, hypertension and diabetes are factors affecting the clustering of risk factors.
7.Sleep quality among patients with hypertension and diabetes
HUANG Wen ; TANG Jialiang ; CHEN Kangkang ; HUANG Mingang ; CHEN Qifeng
Journal of Preventive Medicine 2024;36(4):296-298,303
Objective:
To investigate sleep quality among patients with hypertension and diabetes, so as to provide the basis for improving the health of patients with chronic diseases.
Methods:
From May to August 2022, patients with hypertension and diabetes under the community management in 4 counties and cities (districts) of Shaoxing City, Zhejiang Province were recruited using a multi-stage stratified cluster random sampling method. Demographic information, disease history, smoking, alcohol consumption, physical activity and sleep quality were collected by questionnaire surveys, and blood pressure, fasting blood glucose and glycosylated hemoglobin were collected through physical examination and laboratory testing. The incidence of poor sleep quality symptoms (snoring/asphyxia/suffocation, difficulty falling asleep, night awakening, taking sleeping pills and early morning awakening) in patients with diabetes and hypertension was descriptively analyzed, and sleep quality was evaluated.
Results:
A total of 1 539 patients with hypertension and diabetes were surveyed, including 715 males (46.46%) and 824 females (53.54%). The patients had a mean age of (68.68±7.62) years. The proportions of night awakening, early morning awakening, snoring/asphyxia/suffocation, difficulty falling asleep and taking sleeping pills were 29.82%, 28.53%, 20.73%, 15.79% and 4.29%, respectively. The proportion of poor sleep quality was 66.54%. Employment status, smoking status, moderate/high intensity physical activity and blood pressure control were related to poor sleep quality (all P<0.05).
Conclusion
Poor sleep quality is common in patients with hypertension and diabetes, with the main symptoms being night awakening, early morning awakening, difficulty falling asleep and snoring/asphyxia/suffocation.
8.Combined treatment and prognosis of ependymoma in fourth ventricle of the brain
Binghu YANG ; Guojie JING ; Honghai LUO ; Xuesong LI ; Jialiang HUANG
Chinese Journal of Primary Medicine and Pharmacy 2006;0(03):-
Objective To summarize experience of the combined treatment of ependymoma in fourth ventricle of the brain of child and to study improvement of effect of the operation plus radiotherapy.Methods 35 cases with ependymoma in fourth cerebral ventricle were treated with microneuro-surgical resection.Among the 35 cases,25 were treated with total brain and spinal cord plus local focus radiotherapy within 2 to 3 weeks after operation;8 only with local focus radiotherapy,2 cases were not done with radiotherapy.Results Total removal of tumors was done in 20 cases,subtotal removal in 15 cases,and no patient died from operation.After operation,20 patients had a good recovery,10 had a light disability,and 5 needed assistance.The 5-year survival rate were 90.0%(18/20),6.6%(1/15),88.0(22/25),62.5%(5/8) and 0%,in different group respectively.Conclusion Surgical treatment is obviously effective to ependymoma in fourth ventricle of the brain and total removal of tumors combined with radiotherapy is aid to extend the patient's survival time.
9.Clinical application value of serum amyloid A protein and C reactive protein in early diagnosis of hand-foot-mouth disease in children
Xueqin ZHAO ; Qihua LIANG ; Jialiang HUANG ; Hongling YANG
International Journal of Laboratory Medicine 2015;(18):2699-2701
Objective To explore the clinical application value of serum amyloid protein(SAA) and C reactive protein(CRP)in early diagnosis of hand‐foot‐mouth disease(HFMD)in children .Methods The serum/plasma levels of CRP and SAA in 81 children with HFMD(HFMD group)and 125 healthy children(healthy control group)were detected by using dot immunogold filtration as‐say .Data including white blood cell (WBC) count ,levels of CRP and SAA were obtained and analyzed .And diagnostic efficacies of these indicators were evaluated by using receiver operating characteristic (ROC) curve .Results The serum levels of SAA and CRP and WBC count in HFMD group were significantly higher than those in healthy control group ,and all had statistically significant differences(P<0 .05) .The area under the ROC curve(AUC) of SAA(0 .921) was higher than that of CRP(0 .728) ,SAA/CRP ra‐tio(0 .846) and WBC count(0 .721) for diagnosing HFMD ,there were statistically significant differences(P<0 .05) .Compared with CRP ,WBC count and SAA/CRP ratio ,SAA had better diagnostic efficacy .Conclusion As a new biomarker of infections ,SAA can effectively diagnose HFMD early and provide more sensitive reference to clinicians for early diagnosis ,which might be worthy of clinical application widely .
10.Use of neuroendoscope in intracranial tumor microneurosurgery through a keyhole approach
Binghu YANG ; Guojie JING ; Honghai LUO ; Xuesong LI ; Jialiang HUANG
Chinese Journal of Primary Medicine and Pharmacy 2005;0(02):-
Objective To study the techniques for treating the intracranial tumor.Methods Through a keyhole approach with endoscope-assisted micro-neurosurgery,30 patients with intracranial tumor were treated.With microneurosurgery,larger part of tumor was resected,then under neuroendo-scope remains of tumors were found out and removed.Results Tumors were totally removed in 22 patients,subtotally removed in 5.In three patients cerebral aneurysm was clipped successfully.Two patients with pituitary adenoma had temporay diuresis and one patient non-bacteria meningitis,and after two weeks treatment all recovered.There was no-mortality in 41 patients,no cerebral hemorrhage,optic nerve injury,internal carotid injury,and other complications occurred.Conclusion Endoscope-assisted microneurosurgery through a keyhole approach can increase the total-resection rate for tumors,reduce the trauma of operation and postoperative reaction.