1.Gut microbiome and metabolome signatures in liver cirrhosis-related complications
Satya Priya SHARMA ; Haripriya GUPTA ; Goo-Hyun KWON ; Sang Yoon LEE ; Seol Hee SONG ; Jeoung Su KIM ; Jeong Ha PARK ; Min Ju KIM ; Dong-Hoon YANG ; Hyunjoon PARK ; Sung-Min WON ; Jin-Ju JEONG ; Ki-Kwang OH ; Jung A EOM ; Kyeong Jin LEE ; Sang Jun YOON ; Young Lim HAM ; Gwang Ho BAIK ; Dong Joon KIM ; Ki Tae SUK
Clinical and Molecular Hepatology 2024;30(4):845-862
Background/Aims:
Shifts in the gut microbiota and metabolites are interrelated with liver cirrhosis progression and complications. However, causal relationships have not been evaluated comprehensively. Here, we identified complication-dependent gut microbiota and metabolic signatures in patients with liver cirrhosis.
Methods:
Microbiome taxonomic profiling was performed on 194 stool samples (52 controls and 142 cirrhosis patients) via V3-V4 16S rRNA sequencing. Next, 51 samples (17 controls and 34 cirrhosis patients) were selected for fecal metabolite profiling via gas chromatography mass spectrometry and liquid chromatography coupled to timeof-flight mass spectrometry. Correlation analyses were performed targeting the gut-microbiota, metabolites, clinical parameters, and presence of complications (varices, ascites, peritonitis, encephalopathy, hepatorenal syndrome, hepatocellular carcinoma, and deceased).
Results:
Veillonella bacteria, Ruminococcus gnavus, and Streptococcus pneumoniae are cirrhosis-related microbiotas compared with control group. Bacteroides ovatus, Clostridium symbiosum, Emergencia timonensis, Fusobacterium varium, and Hungatella_uc were associated with complications in the cirrhosis group. The areas under the receiver operating characteristic curve (AUROCs) for the diagnosis of cirrhosis, encephalopathy, hepatorenal syndrome, and deceased were 0.863, 0.733, 0.71, and 0.69, respectively. The AUROCs of mixed microbial species for the diagnosis of cirrhosis and complication were 0.808 and 0.847, respectively. According to the metabolic profile, 5 increased fecal metabolites in patients with cirrhosis were biomarkers (AUROC >0.880) for the diagnosis of cirrhosis and complications. Clinical markers were significantly correlated with the gut microbiota and metabolites.
Conclusions
Cirrhosis-dependent gut microbiota and metabolites present unique signatures that can be used as noninvasive biomarkers for the diagnosis of cirrhosis and its complications.
2.Methodology and Rationale for Ophthalmic Examinations in the Seventh and Eighth Korea National Health and Nutrition Examination Surveys (2017–2021)
Su Jeong SONG ; Kyung Seek CHOI ; Jong Chul HAN ; Donghyun JEE ; Jin Wook JEOUNG ; Young Joon JO ; Jae Yong KIM ; Ko Eun KIM ; Seong Taeck KIM ; Ji Woong LEE ; Tae Eun LEE ; Dong Hui LIM ; Chan Yun KIM ; Hyun Woong KIM ; Sang Woo PARK ; Ki Ho PARK ; Sang Jun PARK ; Min SAGONG ; Jae Pil SHIN ; Chungkwon YOO ; Yoonjung KIM ; Kyungwon OH ; Kyu Hyung PARK
Korean Journal of Ophthalmology 2021;35(4):295-303
This report provides a detailed description of the methodology for ophthalmic examinations according to the Korea National Health and Nutrition Examination Survey (KNHANES) VII and VIII (from 2017 to 2021). The KNHANES is a nationwide survey which has been performed since 1998 in representatives of whole Korean population. During the KNHANES VII and VIII, in addition to the ophthalmic questionnaire, intraocular pressure measurement, visual field test, auto refractometry, axial length and optical coherence tomography measurements were included. This new survey will provide not only provide normative and pathologic ophthalmic data including intraocular pressure, refractive error, axial length, visual field and precise measurement of anterior segment, macula and optic nerve with optical coherence tomography, but also a more accurate diagnosis for major adult blindness diseases, including age-related macular degeneration, diabetic retinopathy, glaucoma, and other ocular diseases, for the national Korean population.
3.Methodology and Rationale for Ophthalmic Examinations in the Seventh and Eighth Korea National Health and Nutrition Examination Surveys (2017–2021)
Su Jeong SONG ; Kyung Seek CHOI ; Jong Chul HAN ; Donghyun JEE ; Jin Wook JEOUNG ; Young Joon JO ; Jae Yong KIM ; Ko Eun KIM ; Seong Taeck KIM ; Ji Woong LEE ; Tae Eun LEE ; Dong Hui LIM ; Chan Yun KIM ; Hyun Woong KIM ; Sang Woo PARK ; Ki Ho PARK ; Sang Jun PARK ; Min SAGONG ; Jae Pil SHIN ; Chungkwon YOO ; Yoonjung KIM ; Kyungwon OH ; Kyu Hyung PARK
Korean Journal of Ophthalmology 2021;35(4):295-303
This report provides a detailed description of the methodology for ophthalmic examinations according to the Korea National Health and Nutrition Examination Survey (KNHANES) VII and VIII (from 2017 to 2021). The KNHANES is a nationwide survey which has been performed since 1998 in representatives of whole Korean population. During the KNHANES VII and VIII, in addition to the ophthalmic questionnaire, intraocular pressure measurement, visual field test, auto refractometry, axial length and optical coherence tomography measurements were included. This new survey will provide not only provide normative and pathologic ophthalmic data including intraocular pressure, refractive error, axial length, visual field and precise measurement of anterior segment, macula and optic nerve with optical coherence tomography, but also a more accurate diagnosis for major adult blindness diseases, including age-related macular degeneration, diabetic retinopathy, glaucoma, and other ocular diseases, for the national Korean population.
4.Effect of Surface Treatment on Shear Bond Strength between Artificial Resin Teeth and Denture Base Resin
Su Ha JEOUNG ; Je Woo CHOI ; Byung Cheul CHOI ; Si Chul KIM
Korean Journal of Dental Materials 2018;45(1):67-76
The purpose of this study was to investigate the effect of retaining holes on the denture base, as well as primer application, on the shear bond strength of denture base resin to the denture base. Using Trubyte Biotone artificial teeth, we selected a maxillary first molar and prepared a total of 80 teeth. Each prepared tooth was polished flat using a dental bar. The polished specimens were placed in the center of a silicon mold (diameter 30 mm, height 23 mm) and were embedded with clear acrylic resin (Ortho Jet, Lang Dental, USA). Forty specimens were shaped, using Fisher bar # 701 at the central part of the alveolar surface, to form retention holes. Each denture base resin was transferred to the resin after surface treatment, as instructed by the manufacturer. The highest shear bond strength (36.2 MPa) was achieved by heat-polymerized resin, when the retention hole and the primer were applied to the artificial tooth. The lowest shear bond strength (11.8 MPa) was achieved by auto-polymerized resin, when the primer was applied to the artificial tooth. The combination of heat-polymerized resin and artificial tooth resulted in a complex fracture pattern, whereas auto-polymerized resin and artificial tooth showed an adhesive fracture pattern.
Adhesives
;
Denture Bases
;
Dentures
;
Fungi
;
Molar
;
Silicon
;
Tooth
;
Tooth, Artificial
5.Study of Clinical Practice Standardization in Dental Hygiene.
Sun Jung SHIN ; Mi Jeong KIM ; Jin Young YANG ; Ji Su YU ; A Yeon JEOUNG ; Myong Suk SHIN
Journal of Dental Hygiene Science 2017;17(1):1-11
There are 82 dental hygiene departments and clinical training institutes across the country with a very wide range of clinical practice content and evaluation methods, making standardization difficult. Therefore, there is a need to establish a standard protocol outlining clinical practice content and evaluation methods for systematic and efficient operation of clinical practice. Thus, this study attempted to propose such a protocol for standardization of dental hygiene clinical practice in dental clinics and hospitals to examine the contents of clinical practice by reviewing relevant literature, and relating it to professional practice within the dental hygienic curriculum to facilitate enhancement of expertise. Clinical practice content was extracted from 74 cases, and was consisted of classifying mandatory and optional clinical practice, training time, and activity methods for each component. To standardize effective clinical practice, it is necessary to organize the components acquired in the course of clinical dentistry training in line with their arrangement on each university's curriculum, in order to learn all components step by step. To do this, it is necessary to present a standardized clinical practice protocol and a organic cooperation between educational institutions and clinical training institutions.
Academies and Institutes
;
Curriculum
;
Dental Clinics
;
Dentistry
;
Oral Hygiene*
;
Professional Practice
6.Crystalline podocytopathy and tubulopathy without overt glomerular proteinuria in a patient with multiple myeloma.
Eun Jeong LEE ; Su Yeon LEE ; So Young PARK ; Yonjin KIM ; Jae Shin CHOI ; Mi Jeoung KIM ; Ji Hyeon PARK ; Jung Eun LEE ; Ghee Young KWON ; Yoon Goo KIM
Kidney Research and Clinical Practice 2016;35(4):259-262
Crystalline nephropathy is a rare yet well-known condition associated with multiple myeloma and other light chain–secreting disorders. Paraproteins that are resistant to proteolysis crystallize within proximal tubular cells and cause light-chain proximal tubulopathy, which presents clinically as Fanconi syndrome. Podocytes are rarely affected, and the crystalline inclusions within podocytes are typically precipitated, yielding significant glomerular proteinuria. Here we report a case of extensive crystalline inclusions primarily within podocytes and proximal tubules that presented only with Fanconi syndrome and renal insufficiency. Despite the presence of extensive crystalline inclusions in podocytes and diffuse foot process effacement, the patient had no clinical evidence suggestive of podocyte injury.
Crystallins*
;
Fanconi Syndrome
;
Foot
;
Humans
;
Multiple Myeloma*
;
Paraproteins
;
Podocytes
;
Proteinuria*
;
Proteolysis
;
Renal Insufficiency
7.Correlation of NPM1 Type A Mutation Burden With Clinical Status and Outcomes in Acute Myeloid Leukemia Patients With Mutated NPM1 Type A.
Su Yeon JO ; Sang Hyuk PARK ; In Suk KIM ; Jongyoun YI ; Hyung Hoi KIM ; Chulhun L CHANG ; Eun Yup LEE ; Young Uk CHO ; Seongsoo JANG ; Chan Jeoung PARK ; Hyun Sook CHI
Annals of Laboratory Medicine 2016;36(5):399-404
BACKGROUND: Nucleophosmin gene (NPM1) mutation may be a good molecular marker for assessing the clinical status and predicting the outcomes in AML patients. We evaluated the applicability of NPM1 type A mutation (NPM1-mutA) quantitation for this purpose. METHODS: Twenty-seven AML patients with normal karyotype but bearing the mutated NPM1 were enrolled in the study, and real-time quantitative PCR of NPM1-mutA was performed on 93 bone marrow (BM) samples (27 samples at diagnosis and 56 at follow-up). The NPM1-mutA allele burdens (represented as the NPM1-mutA/Abelson gene (ABL) ratio) at diagnosis and at follow-up were compared. RESULTS: The median NPM1-mutA/ABL ratio was 1.3287 at diagnosis and 0.092 at 28 days after chemotherapy, corresponding to a median log10 reduction of 1.7061. Significant correlations were observed between BM blast counts and NPM1-mutA quantitation results measured at diagnosis (γ=0.5885, P=0.0012) and after chemotherapy (γ=0.5106, P=0.0065). Total 16 patients achieved morphologic complete remission at 28 days after chemotherapy, and 14 (87.5%) patients showed a >3 log10 reduction of the NPM1-mutA/ABL ratio. The NPM1-mutA allele was detected in each of five patients who had relapsed, giving a median increase of 0.91-fold of the NPM1-mutA/ABL ratio at relapse over that at diagnosis. CONCLUSIONS: The NPM1-mutA quantitation results corresponded to BM assessment results with high stability at relapse, and could predict patient outcomes. Quantitation of the NPM1-mutA burden at follow-up would be useful in the management of AML patients harboring this gene mutation.
Antineoplastic Agents/therapeutic use
;
Bone Marrow/metabolism/pathology
;
Cytarabine/therapeutic use
;
Daunorubicin
;
Humans
;
Karyotype
;
Leukemia, Myeloid, Acute/drug therapy/genetics/*pathology
;
Mutation
;
Nuclear Proteins/*genetics/metabolism
;
Real-Time Polymerase Chain Reaction
;
Recurrence
;
Remission Induction
;
Retrospective Studies
;
Sequence Analysis, DNA
;
fms-Like Tyrosine Kinase 3/genetics
8.Computer-aided detection system for masses in automated whole breast ultrasonography: development and evaluation of the effectiveness.
Jeoung Hyun KIM ; Joo Hee CHA ; Namkug KIM ; Yongjun CHANG ; Myung Su KO ; Young Wook CHOI ; Hak Hee KIM
Ultrasonography 2014;33(2):105-115
PURPOSE: The aim of this study was to evaluate the performance of a proposed computer-aided detection (CAD) system in automated breast ultrasonography (ABUS). METHODS: Eighty-nine two-dimensional images (20 cysts, 42 benign lesions, and 27 malignant lesions) were obtained from 47 patients who underwent ABUS (ACUSON S2000). After boundary detection and removal, we detected mass candidates by using the proposed adjusted Otsu's threshold; the threshold was adaptive to the variations of pixel intensities in an image. Then, the detected candidates were segmented. Features of the segmented objects were extracted and used for training/testing in the classification. In our study, a support vector machine classifier was adopted. Eighteen features were used to determine whether the candidates were true lesions or not. A five-fold cross validation was repeated 20 times for the performance evaluation. The sensitivity and the false positive rate per image were calculated, and the classification accuracy was evaluated for each feature. RESULTS: In the classification step, the sensitivity of the proposed CAD system was 82.67% (SD, 0.02%). The false positive rate was 0.26 per image. In the detection/segmentation step, the sensitivities for benign and malignant mass detection were 90.47% (38/42) and 92.59% (25/27), respectively. In the five-fold cross-validation, the standard deviation of pixel intensities for the mass candidates was the most frequently selected feature, followed by the vertical position of the centroids. In the univariate analysis, each feature had 50% or higher accuracy. CONCLUSION: The proposed CAD system can be used for lesion detection in ABUS and may be useful in improving the screening efficiency.
Classification
;
Humans
;
Imaging, Three-Dimensional
;
Mass Screening
;
Radiographic Image Interpretation, Computer-Assisted
;
Support Vector Machine
;
Ultrasonography, Mammary*
9.Dose Reduction in Automatic Optimization Parameter of Full Field Digital Mammography: Breast Phantom Study.
Myung Su KO ; Hak Hee KIM ; Joo Hee CHA ; Hee Jung SHIN ; Jeoung Hyun KIM ; Min Jeong KIM
Journal of Breast Cancer 2013;16(1):90-96
PURPOSE: We evaluated the impact of three automatic optimization of parameters (AOP) modes of digital mammography on the dose and image quality. METHODS: Computerized Imaging Reference Systems phantoms were used. A total of 12 phantoms with different thickness and glandularity were imaged. We analyzed the average glandular dose (AGD) and entrance surface exposure (ESE) of 12 phantoms imaged by digital mammography in three modes of AOP; namely standard mode (STD), contrast mode (CNT), and dose mode (DOSE). Moreover, exposure factors including kVp, mAs, and target/filter combination were evaluated. To evaluate the quality of the obtained digital image, two radiologists independently counted the objects of the phantoms. RESULTS: According to the AOP modes, the score of masses and specks was sorted as CNT>STD=DOSE. There was no difference in the score of fiber among the three modes. The score of image preference was sorted as CNT>STD>DOSE. The AGD, ESE, and mAs were sorted as CNT>STD>DOSE. The kVp was sorted as CNT=STD>DOSE. The score of all test objects in the phantom image was on a downtrend with increasing breast thickness. The score of masses was different among the three groups; 20-21%>30%>50% glandularity. The score of specks was sorted as 20-21%=30%>50% glandularity. The score of fibers was sorted as 30%>20-21%=50% glandularity. The score of image preference was not different among the three glandularity groups. The AGD, ESE, kVp, and mAs were correlated with breast thickness, but not correlated with glandularity. CONCLUSION: The DOSE mode offers significant improvement (19.1-50%) in dose over the other two modes over a range of breast thickness and breast glandularity with acceptable image quality. Owning knowledge of the three AOP modes may reduce unnecessary radiation exposure by utilizing the proper mode according to its purpose.
Breast
;
Mammography
;
Phantoms, Imaging
;
Radiation Dosage
10.Leukemic manifestation of anaplastic lymphoma kinase-negative-type anaplastic large-cell lymphoma.
Jae Wook KIM ; Su Jin SHIN ; Chan Jeoung PARK
Korean Journal of Hematology 2012;47(1):6-6
No abstract available.
Lymphoma
;
Lymphoma, Large-Cell, Anaplastic

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