1.A Case of Bacteremia by Plesiomonas shigelloides.
Hyukmin LEE ; Kyungja WOO ; Kyungwon LEE ; Yunsop CHONG ; Joo Hang KIM
Korean Journal of Clinical Microbiology 2000;3(2):137-141
Plesiomonas shigelloides was isolated from blood culture of a 53-year-old man with fever, who had treatment history of gastrointestinal malignancy. The patient showed neither clinical features nor hematological finding which suggest bacteremia. Identification of the isolate was delayed because of its similar characteristics with Aeromonas spp. and other gram-negative bacilli. The isolate was misinterpreted as susceptible to ampicillin by the first disk diffusion test. It may not always easy to identify P. shigelloides by conventional tests and to determine its antimicrobial susceptibility accurately, as laboratorians rarely have experience with the organism and as the organism may show unusual inhibition pattern when tested by disk diffusion method or Etest.
Aeromonas
;
Ampicillin
;
Bacteremia*
;
Diffusion
;
Fever
;
Humans
;
Middle Aged
;
Plesiomonas*
2.A Case of Bacteremia by Plesiomonas shigelloides.
Hyukmin LEE ; Kyungja WOO ; Kyungwon LEE ; Yunsop CHONG ; Joo Hang KIM
Korean Journal of Clinical Microbiology 2000;3(2):137-141
Plesiomonas shigelloides was isolated from blood culture of a 53-year-old man with fever, who had treatment history of gastrointestinal malignancy. The patient showed neither clinical features nor hematological finding which suggest bacteremia. Identification of the isolate was delayed because of its similar characteristics with Aeromonas spp. and other gram-negative bacilli. The isolate was misinterpreted as susceptible to ampicillin by the first disk diffusion test. It may not always easy to identify P. shigelloides by conventional tests and to determine its antimicrobial susceptibility accurately, as laboratorians rarely have experience with the organism and as the organism may show unusual inhibition pattern when tested by disk diffusion method or Etest.
Aeromonas
;
Ampicillin
;
Bacteremia*
;
Diffusion
;
Fever
;
Humans
;
Middle Aged
;
Plesiomonas*
3.Contamination of the Hospital Environmental by Pathogenic Bacteria and Infection Control.
Young Ah KIM ; Hyukmin LEE ; Kyungwon LEE
Korean Journal of Nosocomial Infection Control 2015;20(1):1-6
Healthcare-associated infections (HAIs) have increased rapidly, and the wide spread of multidrug resistant (MDR) bacteria has made the control of HAIs a challenging health problem. Transmission of common pathogens from a colonized or infected patient to a susceptible patient has been reported to occur via the hands of healthcare personnel. Therefore, the priority of infection control policy has been allocated in hand hygiene program, contact precautions, and isolation. However, the transmission routes of pathogens are complicated. Furthermore, recent data suggest that the hospital environment could play a role as an important reservoir, and contaminated hospital surfaces, medical equipment, water, and air could be directly or indirectly involved in the transmission pathways. Therefore, we should reconsider the role of hospital environment control in the management of HAIs as well as developing strategies to reduce the contamination of hospital environment.
Bacteria*
;
Colon
;
Delivery of Health Care
;
Hand
;
Hand Hygiene
;
Humans
;
Infection Control*
4.National Survey on Biosafety in Clinical Tuberculosis Laboratories in Korea.
Chang Ki KIM ; Hyukmin LEE ; Dongeun YONG ; Young Ah KIM
Laboratory Medicine Online 2017;7(4):189-195
BACKGROUND: Workers in the microbiology laboratories are continuously exposed to the risk of laboratory-associated infections. Tuberculosis (TB) is a frequent laboratory-acquired infection owing to production of cough-generated aerosols with ease and high infectivity of Mycobacterium tuberculosis. This study aims to investigate the current situation of biosafety in Korean TB laboratories. METHODS: We conducted a nationwide survey of laboratories in hospitals conducting TB tests using questionnaires about their facility and management standards. RESULTS: We analyzed data from 52 hospitals nationwide that have a capacity of 100–2,000 beds, of which only two laboratories conduct high risk drug-susceptibility testing on cultured isolates among other test items, whereas six laboratories perform only direct sputum-smear microscopy. The remaining laboratories performed moderate-risk activities/tests, like sample processing for culture. In the majority of these laboratories, there are laboratory medicine specialists who are fully in charge of health checkup programs for laboratorians. The facility and management standards vary widely according to the size of the hospital and risk of TB tests. CONCLUSIONS: Our survey results about the current situation of TB laboratories could be useful as baseline data for preparing biosafety guidelines for all TB laboratories in Korea.
Aerosols
;
Korea*
;
Microscopy
;
Mycobacterium tuberculosis
;
Specialization
;
Tuberculosis*
5.Comparison of Antibiotic Resistance Rate of Medically Important Microorganisms between Japan and Korea.
Keigo SHIBAYAMA ; Hyukmin LEE ; Sunjoo KIM
Annals of Clinical Microbiology 2015;18(4):111-118
BACKGROUND: A surveillance system for antibiotic resistance is well organized in both Japan and Korea; however, a comparative analysis by microorganism has not previously been conducted. METHODS: We compared the latest antibiotic resistance rates of medically important pathogens, such as Staphylococcus aureus, enterococci, Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter baumannii, between Japan and Korea. Data were collected by JANIS (Japan Nosocomial Infections Surveillance) and KARMS (Korean Antimicrobial Resistance Monitoring System) from 2007-2012. RESULTS: In 2012, the proportions of oxacillin-resistant S. aureus, vancomycin-resistant Enterococcus faecium (VRE), cefotaxime-resistant E. coli, ceftazidime-resistant K. pneumoniae, imipenem-resistant P. aeruginosa, and imipenem-resistant A. baumannii were 53%, 0.4%, 16.6%, 2.9%, 18.5%, and 2% in Japan and 67%, 32%, 29%, 40%, 28%, and 70% in Korea, respectively. CONCLUSION: There were large differences in the frequencies of VRE, ceftazidime-resistant K. pneumoniae, and imipenem-resistant A. baumannii between Japan and Korea. A collaborative study to probe the differences in the antibiotic resistance rates between the two countries should be performed.
Acinetobacter baumannii
;
Cross Infection
;
Drug Resistance, Microbial*
;
Enterococcus faecium
;
Escherichia coli
;
Japan*
;
Klebsiella pneumoniae
;
Korea*
;
Methicillin-Resistant Staphylococcus aureus
;
Pneumonia
;
Pseudomonas aeruginosa
;
Staphylococcus aureus
6.Antimicrobial Resistance of Neisseria gonorrhoeae Isolated in Korea.
Hyukmin LEE ; Kyungwon LEE ; Yunsop CHONG
Journal of Bacteriology and Virology 2012;42(1):9-16
Neisseria gonorrhoeae is the causative agent of gonorrhea, one of the most important sexually transmitted diseases. The incidence of gonorrhea is still prevalent and about 50,000 new cases have been reported annually during the late 2000s in Korea. The antimicrobial resistance of N. gonorrhoeae is very prevalent and most isolates are multi-drug resistant to penicillin G, tetracycline, and fluoroquinolones. The incidence of penicillinase-producing N. gonorrhoeae (PPNG) decreased significantly, but high-level tetracycline-resistant N. gonorrhoeae (TRNG) increased recently. The minimum inhibitory concentrations (MICs) of ceftriaxone were within the susceptible range for all isolates, but MIC creep has been apparent and one cefixime-nonsusceptible isolate (0.5 microg/ml) was found. Spectinomycin-resistant isolates remain rare, but caution should be required when dealing with gonococcal pharyngitis.
Ceftriaxone
;
Fluoroquinolones
;
Gonorrhea
;
Incidence
;
Korea
;
Microbial Sensitivity Tests
;
Neisseria
;
Neisseria gonorrhoeae
;
Penicillin G
;
Pharyngitis
;
Sexually Transmitted Diseases
;
Tetracycline
7.Predicting Phenotypic Antimicrobial Resistance in Escherichia coli Isolates, Using Whole Genome Sequencing Data
Hyunsoo KIM ; Young Ah KIM ; Young Hee SEO ; Hyukmin LEE ; Kyungwon LEE
Annals of Clinical Microbiology 2022;25(4):127-132
Background:
The application of genotypic antimicrobial sensitivity tests (ASTs) is dependent on the reliability of the predictions of phenotypic resistance. In this study, routine AST results and the presence of corresponding antimicrobial resistance genes were compared.
Methods:
Eighty-four extended-spectrum-β-lactamase-producing Escherichia coli isolates from poultry-related samples were included in the study. The disk diffusion method was used to test for susceptibility to antimicrobial compounds, except colistin susceptibility, which was tested using the agar dilution method. Whole-genome sequencing (WGS) was performed using a NextSeq 550 instrument (Illumina, USA). Antimicrobial resistance genes were detected using ResFinder 4.1.
Results:
Concordance rates between the genotype and phenotype ranged from 35.7% (ciprofloxacin) to 96.4% (tetracycline). The presence of tet was a good predictor of phenotypic resistance.
Conclusion
The genotype was a good predictor of tetracycline phenotypic resistance, but there was a gap in the prediction of phenotypic ASTs for trimethoprim-sulfamethoxazole, chloramphenicol, gentamicin, and ciprofloxacin. We concluded that WGS-based genotypic ASTs are inadequate to replace routine phenotypic ASTs.
8.A Transfusion Experience for a Patient with Cis-A2B3 Phenotype.
Eunyoung OH ; Hyukmin LEE ; Younhee PARK ; Hwan Sub LIM
Korean Journal of Blood Transfusion 2010;21(2):154-157
We report the case of a 64-year-old man presenting to the hospital for treatment of his anemia. Exact ABO blood typing is an essential step to prevent transfusion reactions. The selection of the wrong blood component for transfusion can be a clinical problem and in this case the patient had a cis-AB blood type that could have caused an ABO discrepancy. In this case neither autologous or directed blood transfusion was possible and O+ red blood cell was transfused without a transfusion reaction.
Anemia
;
Blood Group Incompatibility
;
Blood Grouping and Crossmatching
;
Blood Transfusion
;
Erythrocytes
;
Humans
;
Middle Aged
;
Phenotype
9.Comparison of Sensitivity of Tests for Detecting Bacterial Contamination in Platelet Concentrates.
Hyukmin LEE ; Younhee PARK ; Hwan Sub LIM
Korean Journal of Blood Transfusion 2009;20(1):32-39
BACKGROUND: The demand for platelet concentrates has increased for patients with hemato-oncologic diseases as well as for patients with chronic diseases. As platelet concentrates are preserved at 22~24degrees C, the chance of bacterial contamination exposure is increased, which can cause fatal outcomes. We evaluated various methods for detecting bacterial contamination in platelet concentrates. METHODS: 0.5 MacFarland standard solutions were prepared using the Staphylococcus aureus ATCC 25923 & Escherichia coli ATCC25922 strains. The platelet concentrates were inoculated with various concentrations (10(1)~10(5) CFU/mL) of bacteria and then gram staining, plate culture, broth culture and 16s RNA were used to detect bacteria. RESULTS: The gram stain method was unable to detect bacteria concentrations less than 10(4) CFU/mL. The plate culture method detected bacterial growth concentrations up to 10(3) CFU/mL, but only 1 specimen of S. aureus was detected at the lowest concentration of 10(1) CFU/mL. The broth culture method detected 10(2) CFU/mL concentrations except for samples from S. aureus and E. coli strains. Among the 10(1) CFU/mL lowest concentrations, bacterial growth detected 3 samples from S. aureus and 2 samples from E. coli. For the broth culture method, detection of bacterial growth up to 10(1) CFU/mL took 58.9 hours, it took 57.5 hours for S. aureus and E. coli respectively, and it took 43.9 hours and 49.0 hours for 10(2) CFU/mL concentrations of S. aureus and E. coli, respectively. The PCR method showed all positive results except for 1 specimen of E. coli. CONCLUSION: The broth culture method showed similar sensitivity to PCR except for the 43.9~58.9 hours of an incubation period to show positive RESULTS. Overall, the PCR method was most sensitive and rapid method for detecting bacterial contamination in platelet concentrates.
Bacteria
;
Blood Platelets
;
Chronic Disease
;
Escherichia coli
;
Fatal Outcome
;
Humans
;
Polymerase Chain Reaction
;
RNA
;
Staphylococcus aureus
10.Epidemiology and Resistance Patterns of Bacterial Pathogens in Urinary Tract Infections in the Northern Gyeonggi-do Area during 2007-2011.
Eunyoung OH ; Hyukmin LEE ; Hwan Sub LIM ; Younhee PARK
Laboratory Medicine Online 2013;3(1):34-39
BACKGROUND: Bacteria that cause urinary tract infections (UTIs) are found with different frequencies in different regions; moreover, antibiotic susceptibility can also vary by region. We retrospectively studied and compared the species and antimicrobial susceptibility of bacterial pathogens isolated from patients with UTIs in the northern Gyeonggi-do area. METHODS: We analyzed urine specimens collected from patients who visited the Myongji Hospital between 2007 and 2011. The urine specimens were cultured, and bacteria were identified by biochemical examination with an API kit (bioMerieux Inc., USA). Antimicrobial susceptibility was determined by the disc diffusion method and the Vitek II system (bioMerieux Inc., USA). RESULTS: A total of 11,818 (31.4%) urine specimens were culture positive. The most common species identified were Escherichia coli (37.1%), Klebsiella pneumoniae (7.4%), Enterococcus faecium (6.1%), and Candida spp. (5.5%). The proportion of isolates producing extended-spectrum beta-lactamases significantly increased during the study period. CONCLUSIONS: E. coli, K. pneumoniae, and E. faecium were the 3 most common organisms identified. Of note, however, was the increasing frequency of Pseudomonas spp. and Proteus spp. isolated during the more recent years. Further studies are required from other centers in the northern Gyeonggi-do area.
Bacteria
;
beta-Lactamases
;
Candida
;
Diffusion
;
Enterococcus faecium
;
Escherichia coli
;
Humans
;
Klebsiella pneumoniae
;
Pneumonia
;
Proteus
;
Pseudomonas
;
Retrospective Studies
;
Urinary Tract
;
Urinary Tract Infections