Genotyping Tool for Viral SEQuences (GTVseq) provides scientists with the genotype information on the viral genome sequences including HIV-1, HIV-2, HBV, HCV, HTLV-1, HTLV-2, poliovirus, enterovirus, flavivirus, Hantavirus, and rotavirus. GTVseq produces alternative and additive genotype information for the query viral sequences based on two different, but related, scoring methods. The genotype information produced is reported in a graphical manner for the reference genotype matches and each graphical output is linked to the detailed sequence alignments between the query and the matched reference sequences. GTVseq also reports the potential 'repeats' and/or 'recombination' sequence region in a separated window. GTVseq does not replace completely other well-known genotyping tools such as NCBI's virus sequence genotyping tool (http://www.ncbi. nlm.nih.gov/projects/genotyping/formpage.cgi), but provides additional information useful in the confirmation or for further investigation of the genotype(s) for the newly isolated viral sequences.
Enterovirus ; Flavivirus ; Genome, Viral ; Genotype ; Hantavirus ; HIV-1 ; HIV-2 ; Human T-lymphotropic virus 1 ; Human T-lymphotropic virus 2 ; Poliovirus ; Recombination, Genetic ; Research Design ; Rotavirus ; Sequence Alignment ; Viruses

Genotyping Tool for Viral SEQuences (GTVseq) provides scientists with the genotype information on the viral genome sequences including HIV-1, HIV-2, HBV, HCV, HTLV-1, HTLV-2, poliovirus, enterovirus, flavivirus, Hantavirus, and rotavirus. GTVseq produces alternative and additive genotype information for the query viral sequences based on two different, but related, scoring methods. The genotype information produced is reported in a graphical manner for the reference genotype matches and each graphical output is linked to the detailed sequence alignments between the query and the matched reference sequences. GTVseq also reports the potential 'repeats' and/or 'recombination' sequence region in a separated window. GTVseq does not replace completely other well-known genotyping tools such as NCBI's virus sequence genotyping tool (http://www.ncbi. nlm.nih.gov/projects/genotyping/formpage.cgi), but provides additional information useful in the confirmation or for further investigation of the genotype(s) for the newly isolated viral sequences.
Enterovirus ; Flavivirus ; Genome, Viral ; Genotype ; Hantavirus ; HIV-1 ; HIV-2 ; Human T-lymphotropic virus 1 ; Human T-lymphotropic virus 2 ; Poliovirus ; Recombination, Genetic ; Research Design ; Rotavirus ; Sequence Alignment ; Viruses

OBJECTIVETo study the seroprevalence of human T-cell leukaemia virus type I/II (HTLV-I/II) infection in adult population in the east coastal areas of Fujian and to explore the possible risk factors of HTLV-I/II.

METHODSA total number of 3259 blood samples from drug users, sexually transmitted disease (STD) patients, prostitutes and blood donors for serologic assays during 1999 to 2002, were collected. All samples were screened for HTLV-I/II antibody, using enzyme linked immunosorbent assay (ELISA) kits. All of the positive samples were confirmed by western blot (WB) kits. Statistical analysis was done by Epi software, and chi(2) test by Fisher's exact test. P value < 0.05 was considered statistically significant.

RESULTSThe overall seroprevalence rate of HTLV-I/II in healthy populations was 0.06% including, 0.32% in drug users, 0.58% in STD patients and prostitutes respectively. HTLV-II had not been found. The seropositive rates for HTLV-I in STD patients and prostitutes were significantly higher than the findings among healthy populations (P < 0.05). There were no different seroprevalence rates between drug users and healthy populations (P > 0.05). No significant changes in HTLV-I prevalence rates were found in the different age groups as well as in Fuzhou and Linde cities (P > 0.05).

CONCLUSIONThe result suggested that in the east coastal areas of Fujian province, HTLV-I was the main prevalent virus. The seroprevalence of HTLV-I was very low, with no HTLV-II. Neither age nor gender seemed to be HTLV-I risk factor in the east coastal areas of Fujian province, but the increase of exposure to sex might be one.

China ; epidemiology ; DNA, Viral ; isolation & purification ; Female ; HTLV-I Antibodies ; blood ; HTLV-I Antigens ; immunology ; HTLV-I Infections ; diagnosis ; epidemiology ; HTLV-II Antibodies ; blood ; HTLV-II Antigens ; immunology ; HTLV-II Infections ; diagnosis ; epidemiology ; Human T-lymphotropic virus 1 ; genetics ; immunology ; isolation & purification ; Human T-lymphotropic virus 2 ; genetics ; immunology ; isolation & purification ; Humans ; Male ; Prevalence ; Seroepidemiologic Studies ; Sexually Transmitted Diseases, Viral ; epidemiology