Objective To register two breath-hold lung volumes image from one subject with deep expiration and deep inspiration.Methods Three pairs of thoracic high resolution CT serial from three subjects were collected under two breath-hold respiration stages.The lung parenchyma of every serial was segmented using the serial segmentation algorithm.Left and right lungs were stored separately.Expiration and inspiration volume images of single lung were registered.Firstly,affine transformation parameters were found based on the anatomic flag surfaces and expiration image volume was re-sampled with affine transformation.Secondly,"Demons" algorithm was employed to register two image volumes non-rigidly.Results Two lung surfaces and the inner structures have a nice registration.The average volume overlap of two images before registration is 0.7982.After global affine transformation,it improves to 0.8936.After "Demons",it is up to 0.9544.The average descending percentage of root mean square errors is 19.83%(after the global affine transformation) and 49.43%(after the "Demons" non-rigid registration).Conclusion The intra-subject registration between two lung image volumes with large deformations described here has an effective registration result.It offers a good base to analyze the lung respiration function.

Objective: To develop a way of high-quality real-time three dimension surface reconstruction for high-resolution volume data.Method 3D surface point sets of single organ were using a method of binding the threshold and morphological operations.The normal vector of every surface point was calculated.According to the gray gradients of volume data,the triangle face was replaced by surface points to describe the organ surface,and the surface was displayed with OpenGL interface of display card after defining the color and transparent of the organ surface.Result Based on hardware platform of personal computer,the reconstruction of skeleton and skin for the digitized virtual Chinese man No.1(VCH-M1) from CT database was constructed,the rendering speed was faster than 25 F/s.Conclusion The algorithm is capable of realizing a real-time rendering for 512?512?1720 high resolution volume data.

Objective To search an approach based on Support Vector Machine (SVM) for detection of different abnormalities including micro-calcifications and masses from digital mammograms. Methods Such detections were formulated as supervised-learning problems and SVM was applied to the detection algorithm. After the regions of interest were pre-processed by specific rectangular windows, three kinds of parameters were extracted, including the direct pixel value parameter, the parameters from Spatial Grey Level Dependency (SGLD) matrices and from Discrete Cosine Transform (DCT). At first, each kind of parameter was taken as the input of SVM to train and test the machine respectively. Then all the parameters were incorporated into the input of SVM. Results the classification accuracy is 92.28%, 90.35% and 91.12% respectively when only one parameter input. The classification accuracy reaches 99.23% when all the parameter incorporated. Conclusion The parameters extracted from the regions of interest in digital mammograms can reflect the characteristics of different regions and SVM is a powerful tool for the detection of abnormalities from digital mammograms.

Some noises still exist in the single-trial averaged visual evoked potentials (VEP), so further extraction of the above results is of significance. Independent component analysis (ICA)can separate the sources from their mixtures and make the output statistically as independent as possible; it can remove noises effectively. In this paper, the principle, experiment analyses and results of ICA based on quasi-Newton iteration rule for VEP feature extraction are introduced, It is compared with the fixed-point FastICA algorithm. The experiment results show that the provided algorithm may reinforce signals effectively and extract distinct P300 from the single-trial averaged VEP. It is of good applicability.
Algorithms ; Event-Related Potentials, P300 ; physiology ; Evoked Potentials, Visual ; physiology ; Humans ; Pattern Recognition, Automated ; methods ; Principal Component Analysis ; Signal Processing, Computer-Assisted

In order to study event-related desynchronization (ERD) related to voluntary movement, we designed two experiments. In the first experiment, untrained subjects were required to imagine the action of typing with left or right index finger for about 1 second before real action, whereas they were required to type instantly after instruction in the second experiment. By analyzing spontaneous EEG signals between the instruction and the action, we predicted which finger was used. The prediction accuracy in the first experiment fell from 85% to 71% with the progress of experiment, the average accuracy being 78%, whereas the prediction result was almost random guess in the second experiment. The results demonstrate that (1) ERD patterns are significantly affected by the effective duration of motion imagination, (2) unconscious reduction of this duration can decrease the prediction accuracy. Therefore, when designing subsequent BCI experiments, we should devote our attention to the question of how to keep the effective duration of motion imagination.
Brain ; physiology ; Cortical Synchronization ; Electroencephalography ; Humans ; Man-Machine Systems ; Task Performance and Analysis ; User-Computer Interface

Traditional sleep scoring system describes the sleep EEG characterized by features in time domain as well as frequency domain. Power Spectral Density (PSD) is one of the well-used methods to observe the occurrence of specified rhythms. However, the parameter model based PSD estimation is used with the assumption that the model order is determined as low as possible through prior knowledge. This paper briefs the development of Autoregressive Model Order (ARMO) criterion, and provides the distribution of ARMOs for specified sleep EEG, which shows that ARMOs concentrate on several well separated regions that are indicative of the microstructure and transition states. This study suggests the promising perspective of ARMO as a special EEG feature for weighing complexity, randomness and rhythm components.
Delta Rhythm ; Electroencephalography ; Humans ; Models, Neurological ; Regression Analysis ; Signal Processing, Computer-Assisted ; Sleep Stages ; physiology

In this paper, we discuss the relation betw een matched filter and wavelet transform(WT), and point out that wavelet transf orm is just the matched filter with changeable detection template. According to this idea, the method of signal detection based on hybrid wavelet transform (HWT ) is proposed. HWT in this paper means that in WT decomposition and reconstructi on, we use two different mother wavelets. One is used as a changeable template for the pulses detection and the other is used for the characteristic enhancement of detected pulse. This method has been applied to the interference pulse dete ction in EEG signal. The experiment result shows that HWT has the good property for instantaneous signal detection.

Correct sleep scoring is the base of sleep studying; nonlinear features of EEG can represent different sleep stages. In this paper, correlation dimension (D2) and approximate entropy (ApEn) of sleep EEG have been calculated. The statistical results reveal that: D2 does not come to be saturated when the embedding dimension increases, but the relative value of D2 can effectively distinguish different sleep stages. ApEn has the advantage of calculating simply, steady result and representing preferably different sleep stages. ApEn and the relative value of D2 reveal, from different point of view, the same rule about EEG (brain) complexity changing, that is, both complexity and its fluctuation are maximal in the subject's awake hour, are decreasing with the deepening of sleep, but the complexity in REM is about the level between S1 and S2.
Electroencephalography ; Entropy ; Humans ; Nonlinear Dynamics ; Sleep ; physiology ; Sleep Stages ; physiology

In this paper a new direct volume rendering method is presented for fast extraction of iso-surface by adopting the idea from the Shear-Warp algorithm. By creating the sorted volumetric data from the original volume data and specifying a value range of data which determines the part of the sorted volumetric data traversed, the amount of volume data traversed would be reduced obviously and the extraction operation of iso-surface would be very fast. In addition, we can adjust the value range to obtain the different rendering speed and image quality according to the purpose in application. Moreover, the proposed algorithm will not output any intermediate data after the sorted volumetric data being produced. Therefore, it is possible to realize the rapid 3D surface reconstruction for medical images on the personal computer without the support of any hardware accelerator.
Algorithms ; Humans ; Image Interpretation, Computer-Assisted ; Image Processing, Computer-Assisted ; Imaging, Three-Dimensional ; Magnetic Resonance Imaging ; Tomography, X-Ray Computed

This paper is devoted to predicting the transmembrane helices in proteins by statistical modeling. A novel segment-training algorithm for Hidden Markov modeling based on the biological characters of transmembrane proteins has been introduced into training and predicting the topological characters of transmembrane helices such as location and orientation. Compared to the standard Balm-Welch training algorithm, this algorithm has lower complexity while prediction performance is better than or at least comparable to other existing methods. With a 10-fold cross-validation test on a database containing 160 transmembrane proteins, an HMM model trained with this algorithm outperformed two other prediction methods: TMHMM and MEMSTAT; the novel method was validated by its prediction sensitivity (97.0%) and correct location (91.3%). The results showed that this algorithm is an efficient and a reasonable supplement to modeling and prediction of transmembrane helices.
Algorithms ; Data Interpretation, Statistical ; Mathematical Computing ; Membrane Proteins ; chemistry ; Models, Statistical ; Protein Conformation