1.High-throughput pyrosequencing of the complete chloroplast genome of Magnolia officinalis and its application in species identification.
Xi-Wen LI ; Zhi-Gang HU ; Xiao-Han LIN ; Qing LI ; Huan-Huan GAO ; Guo-An LUO ; Shi-Lin CHEN
Acta Pharmaceutica Sinica 2012;47(1):124-130
Chloroplast genome sequences have comprehensive application prospects in DNA barcoding and chloroplast engineering in traditional Chinese medicine. The complete chloroplast genome of Magnolia officinalis sequenced by high-throughput pyrosequencing and a sequencing procedure was established. Fourteen contigs were obtained after de nove assembly. The sequencing percent of coverage was 99.99%. The chloroplast genome is 160 183 bp in size, and has a typical quadripartite structure with the large (LSC, 88 210 bp) and small copy (SSC, 18 843 bp) regions separated by two copies of an inverted repeat (IRs, 26 565 bp each). chloroplast genes were successfully annotated, of which 17 genes located in each IR region. The chloroplast genome features in Magnolia officinalis are nearly identical to those from other Magnoliid chloroplast genomes. Phylogenetic analyses were performed based on 81 shared coding-genes for a total of 9 Magnolia samples of 5 closely related species. Results showed that distinguishing among species was generally straightforward at the species and population level. This study confirmed the effectiveness of our chloroplast genome sequencing procedure. The chloroplast genome can provide distinguishing differences to help identify Magnolia officinalis and its closely related plants.
Base Sequence
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Chloroplasts
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genetics
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DNA, Chloroplast
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genetics
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Genes, Chloroplast
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Genes, Plant
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Genome, Chloroplast
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Genome, Plant
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High-Throughput Nucleotide Sequencing
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Magnolia
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classification
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genetics
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Phylogeny
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Sequence Analysis, DNA
2.Effect of lncRNA HOTTIP on proliferation, migration and invasion of cervical cancer cells
Fang LIU ; Lian LI ; Huan ZHANG ; Weiyi ZHANG ; Xiaojie WU ; Yongyi XI ; Yanrong ZHOU ; Hongxing CHEN ; Yanli LIN
Military Medical Sciences 2015;(6):443-447,452
Objective To investigate the potential biological effect of long non-coding RNA( lncRNA) HOXA transcript at the distal tip( HOTTIP) on proliferation, migration and invasion of cervical cancer cells.Methods HOTTIP small interference RNA(siRNA) was transfected into HeLa and C-33A cervical cancer cell lines, with negative siRNA as a control.qPCR assay was performed to confirm the knock-down of the level of HOTTIP.CCK8 assay and colony-forming unit (CFU) assay were performed to evaluate the effect of HOTTIP knock-down on HeLa and C-33A cell proliferation.Wound healing assay was performed to evaluate the effect of HOTTIP knock-down on HeLa and C-33A cell proliferation and migration.Tumor invasion assay was used to evaluate the effect of HOTTIP knock-down on HeLa and C-33A cell invasion. Results The expression level of HOTTIP was efficiently knocked down by siRNA 48 h post transfection.The results of CCK8 assay and CFU assay showed that HOTTIP knock-down significantly decrease of cervical cancer cell proliferation. Wound healing assay result indicated that HOTTIP knock-down obviously suppressed cervical cancer cell proliferation and migration.Tumor invasion assay results demonstrated that HOTTIP knock-down significantly suppressed cervical cancer cell invasion.Conclusion HOTTIP levels in HeLa and C-33A cervical cancer cell lines can be efficiently knocked down with the siRNA strategy, and the HOTTIP knock-down can significantly suppress the tumor characteristics of cervical cancer cells, including the ability of proliferation, migration and invasion.
3.Single wall carbon nanotube induced inflammation in cruor-fibrinolysis system.
Lei TIAN ; Zhi Qing LIN ; Ben Cheng LIN ; Huan Liang LIU ; Jun YAN ; Zhu Ge XI
Biomedical and Environmental Sciences 2013;26(5):338-345
OBJECTIVETo study single wall carbon nanotubes (SWCNT) and its role in inducing inflammatory cytokines in the cruor-fibrinolysis system of rat.
METHODSTwenty one Wistar rats were divided into four groups: 1) control; 2) low-dose SWCNT (0.15 mg/kg BW); 3) medium-dose SWCNT (0.75 mg/kg BW); 4) high-dose SWCNT (1.5 mg/kg BW). Intratracheal instillation of SWCNT suspensions was administered to rats once per day for 21 days. In order to assess the exposure effect of SWCNT to the rats, activity of Inflammatory cytokine was measured and markers of cruor-fibrinolysis system were studied via ELSIA. Also, change in clotting time was recorded and histopathology was studied.
RESULTSIL-6 and IL-8 concentrations of rats exposed to SWCNT were significantly higher than those in controls (P<0.05). The activity of inflammatory cytokines and histopathological change indicated that oxidative damage occurred. Change in clotting time in rats exposed to SWCNT decreased compared with controls. Meanwhile, t-PA (tissue-tupe plassminogen activator) and AT-III (antithrombin-III) levels in rats exposed to particulates increased or decreased significantly compared with controls (P<0.05). A similar trend was observed for D-dimer (D2D) levels, indicating that SWCNT can impact the cruor-fibrinolysis system of rat.
CONCLUSIONThe results from our study suggest that an increased procoagulant activity and reduced fibrinolytic activity in rats exposed to SWCNT can cause pulmonary oxidative stress and inflammation, due to the release of pro-thrombotic and inflammatory cytokines into the blood circulation of rat.
Animals ; Blood Coagulation ; Body Weight ; Cytokines ; metabolism ; Fibrinolysis ; Inflammation ; etiology ; metabolism ; Nanotubes, Carbon ; Rats ; Rats, Wistar
4.Effects of oxymatrine on serum levels of Th1/Th2 type cytokines in HBsAg transgenic mice.
Yu-hong DONG ; Hong-li XI ; Feng TIAN ; Ai-jun KANG ; Nan-lin ZHANG ; Min YU ; Yan-yan YU ; Qin-huan WANG
Chinese Journal of Experimental and Clinical Virology 2004;18(3):277-280
OBJECTIVETo explore the effects of oxymatrine on serum levels of Th1/Th2 cytokines in HBsAg transgenic mice.
METHODSHBsAg transgenic mice were divided into oxymatrine group and control group. Each mouse was injected with either oxymatrine 200 mg/kg 0.2 ml or 0.9% NaCl 0.2 ml intraperitoneally once a day for 30 days. Serum IFN-gamma, IL-2 and IL-4, IL-10 were quantitated before and after different treatment.
RESULTSThere was no significant difference on the levels of IFN-gamma and IL-4 before and after treatment in control group. While in oxymatrine group, the levels of IFN-gamma before and after treatment were (3.108+/-3.172) pg/ml and (11.059+/-6.971) pg/ml; those of IL-4 were (29.045+/-13.235) pg/ml and (13.024+/-9.002) pg/ml (both P less than 0.001). After treatment, the levels of IL-2 in control and oxymatrine group were (1.070+/-0.447) pg/ml and (5.537+/-2.887) pg/ml (P less than 0.000 1); and those of IL-10 were (97.226+/-73.306) pg/ml and (33.607+/-23.154) pg/ml (P less than 0.01).
CONCLUSIONAfter injection of oxymatrine to HBsAg transgenic mice, the serum concentration of Th1 cytokines increased while the Th2 cytokines decreased. This can help us understand more better on the mechanisms of anti-HBV effect of oxymatrine.
Alkaloids ; pharmacology ; Animals ; Antiviral Agents ; pharmacology ; Cytokines ; blood ; Female ; Hepatitis B Surface Antigens ; genetics ; Hepatitis B virus ; drug effects ; genetics ; Interferon-gamma ; blood ; Interleukin-10 ; blood ; Interleukin-2 ; blood ; Interleukin-4 ; blood ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Transgenic ; Quinolizines
5.Oxidative damage to lung tissue and peripheral blood in endotracheal PM2.5-treated rats.
Zhi-Qing LIN ; Zhu-Ge XI ; Dan-Feng YANG ; Fu-Huan CHAO ; Hua-Shan ZHANG ; Wei ZHANG ; Huang-Liang LIU ; Zai-Ming YANG ; Ru-Bao SUN
Biomedical and Environmental Sciences 2009;22(3):223-228
OBJECTIVETo investigate the oxidative damage to lung tissue and peripherial blood in PM2.5-treated rats.
METHODSPM2.5 samples were collected using an auto-sampling instrument in summer and winter. Treated samples were endotracheally instilled into rats. Activity of reduced glutathione peroxidase (GSH-Px) and concentration of malondialdehyde (MDA) were used as oxidative damage biomarkers of lung tissue and peripheral blood detected with the biochemical method. DNA migration length (microm) and rate of tail were used as DNA damage biomarkers of lung tissue and peripheral blood detected with the biochemical method.
RESULTSThe activity of GSH-Px and the concentration of MDA in lung tissue significantly decreased after exposure to PM2.5 for 7-14 days. In peripheral blood, the concentration of MDA decreased, but the activity of GSH-Px increased 7 and 14 days after experiments. The two indicators had a dose-effect relation and similar changing tendency in lung tissue and peripheral blood. The DNA migration length (microm) and rate of tail in lung tissue and peripheral blood significantly increased 7 and 14 days after exposure to PM2.5. The two indicators had a dose-effect relation and similar changing tendency in lung tissue and peripheral blood.
CONCLUSIONPM2.5 has a definite oxidative effect on lung tissue and peripheral blood. The activity of GSH-Px and the concentration of MDA are valuable biomarkers of oxidative lung tissue damage induced by PM2.5. The DNA migration length (microm) and rate of tail are simple and valuable biomarkers of PM2.5-induced DNA damage in lung tissues and peripheral blood. The degree of DNA damage in peripheral blood can predict the degree of DNA damage in lung tissue.
Animals ; DNA Damage ; drug effects ; Drug Administration Routes ; Drug Administration Schedule ; Lung ; drug effects ; pathology ; Lung Diseases ; blood ; chemically induced ; pathology ; Male ; Oxidative Stress ; Particle Size ; Particulate Matter ; administration & dosage ; toxicity ; Rats ; Rats, Wistar ; Seasons
6.Frailty and cognitive impairment
Chen SUN ; Hong SHI ; Huan XI ; Jing LI ; Qin LIN ; Yuetao ZHAO ; Juan DONG
Chinese Journal of Geriatrics 2018;37(7):826-830
Frailty is an age-related syndrome mainly characterized by a decreased physical reserves and the development of multi-system disorders,which damage the protective ability of organism to exterior and interior stressor of harmful stimuli,and the protective ability of organism to maintain homeostasis,finally to increase the susceptibility and vulnerability to stressor of harmful stimuli.One focus is to investigate the correlation between physical and cognitive functions in elderly people as the basis of exploration for the association between frailty and cognitive decline.Several epidemiological studies have reported an idea that frailty increases the risk of cognitive decline which interactively increases the risk of frailty.This suggests that cognition impairment interacts with frailty in the ageing process.This paper reviews the potential association between frailty and cognitive impairment on the basis of the evidence on neuropathology,hormonal dysregulation,nutrition condition,chronic inflammation,vascular disease risk,and psychological factor.
7.Efficacy and safety of remimazolam tosylate for general anesthesia in morbidly obese patients
Gong CHEN ; Yan-Xi LU ; Jin LI ; Fan ZHANG ; Can-Can CHENG ; Xin-Lin YIN ; Sai-Ying WANG ; Huan CHANG
Chinese Pharmacological Bulletin 2024;40(5):859-864
Aim To evaluate the effectiveness and safety of remimazolam tosylate for administering general anesthesia in morbidly obese patients.Methods This clinical trial was conducted at a single center from De-cember 2021 to October 2023.It assessed 108 morbid-ly obese patients(body mass index,BMI≥40)who underwent laparoscopic sleeve gastrectomy.Patients were randomly assigned to either the remimazaolam group(Group R)or the propofol group(Group P)for general anesthesia induction and maintenance.The primary outcome was to compare the incidence of ad-verse events and postoperative recovery characteristics between the two groups.Results During induction pe-riod,the incidence of adverse events was higher in group P,including hypotension(P<0.01),hypox-emia(P<0.05),bradycardia(P<0.01),and in-creased vasopressor requirement(P<0.05).The time to loss of consciousness and BIS falling to 60 was shor-ter in group P than in group R(P<0.01).There were no statistically significant differences between the two groups in terms of postoperative quality of recovery(QoR-40 score),24-hour postoperative pain visual an-alogue scale(VAS)scores and morphine consump-tion.In conclusion,remimazolam tosylate,utilized for anesthesia induction in morbidly obese patients,signif-icantly reduced hypotension and hypoxemia compared to propofol,while it could also maintain similar postop-erative recovery quality.Conclusions Remimazolam is effective in reducing the incidence of hypotension and hypoxaemia during the induction period of general anaesthesia in morbidly obese patients and it is compa-rable to propofol in terms of quality of postoperative re-covery.
8.Isolation and identification of Japanese encephalitis virus in Tanghe county, Henan Province
Huan-Yu WANG ; Zong-Yu HAO ; Shi-Hong FU ; Ai-Mei ZHANC ; Yu-Xi CAO ; Fu-Dang SONG ; Lin-Hong LI ; Ying HE ; Huan-Qin WANG ; Qing TANG ; Guo-Dong LIANG
Chinese Journal of Experimental and Clinical Virology 2008;22(2):83-86
Objective To isolate Japanese encephalitis virus (JEV) from mosquitoes collected in Tanghe county, Henan province and analyze the genotype of the newly isolated JEV strains and the characteristics of amino acid in the E gone. Methods Viruses were isolated from mosquitoes collected in 2004 and identified by biological, serological and molecular biological methods. PrM and E segments of the newly isolated JEV were amplified by RT-PCR, the PCR products were purified and sequenced. Multiple alignment, phylogenetic and amino acid (AA) analysis were carried out by Clustal X (1.8) program, MEGA 3.1 and GENEDOS (3.2).Results Totally 3722 mosquitoes were collected including Culex, Armigeres, Aedes, Anopheline. Three new JEV strains isolated from Cutex belonged to genotype 1. The homologue of nucleotide and amino acid of E gene between new JEV strains and live attenuated vaccine strain SA14-14-2 was 86.9%-87.7% and 95.2%-97.0%,respectively. Totally there were 12 common sites of amino acid differences in E gene between them. Conclusion Newly isolated viruses in Henan province belonged to JEV genotype 1. It suggests that the vaccine strain SA14-14-2 currently used for preventing JE is able to protect people from JEV infection, although there are some amino acid differences between them.
9.Logistic analysis on risk factors related to smear positive pulmonary tuberculosis.
Xi-Tai LI ; Lin-Xiang YE ; Lü-Yuan SHI ; Ai-Qing XIAO ; Shuang-Yi HOU ; Wen WANG ; Jian-Jun YE ; Shao-Wen TANG ; Huan-Hu ZHAO ; Hai-Tao XU
Chinese Journal of Epidemiology 2004;25(8):658-660
OBJECTIVETo explore the risk factors on relapsing tuberculosis related to smear positive pulmonary tuberculosis which had been cured for five years.
METHODSPatients with smear positive pulmonary tuberculosis registered in 1995 from ten countries in Hubei province were studied and logistic regression was used for data analysis.
RESULTSThe 5-year relapse rate of smear positive pulmonary tuberculosis was 3.85 percent. Risk factors related to relapse would include being non-modeled county, negative smear after treated for three months, the class of retreatment, management of non-DOTS, method of chemotherapy and patients that did not get treated by the tuberculosis institute, with odds ratios of 0.15, 4.62, 3.68, 5.88 and 6.47, respectively.
CONCLUSIONEffect standard, regulation DOTS and the centralized management measure might have had effects on decreasing the relapse rate.
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Antitubercular Agents ; administration & dosage ; adverse effects ; therapeutic use ; Child ; China ; epidemiology ; Contact Tracing ; Directly Observed Therapy ; Female ; Humans ; Logistic Models ; Male ; Middle Aged ; Mycobacterium tuberculosis ; isolation & purification ; Odds Ratio ; Recurrence ; Risk Factors ; Sputum ; microbiology ; Tuberculosis, Pulmonary ; drug therapy ; microbiology
10.Isolation and identification of Japanese encephalitis virus in Liaoning Province.
Jun-wen WANG ; Shi-hong FU ; Huan-yu WANG ; Xiao-yan MAO ; Wei-bin LIU ; Ying HE ; Xiao-hong SUN ; Zeng-lin CAI ; Li-ping WU ; Xi-fang ZHAO ; Rui-hong HAN ; Ya JING ; Guo-dong LIANG
Chinese Journal of Experimental and Clinical Virology 2006;20(1):61-65
BACKGROUNDTo study arboviruses carried by mosquitoes in Liaoning Province in 2002.
METHODSTotally 4927 mosquitoes were collected from Liaoning Province in July 2002. Virus strains were isolated by inoculating BHK-21, C6/36 and Vero cells. The newly isolated strains were identified by serological (ELISA and IFA) and molecular methods (Real-Time PCR and RT-PCR).
RESULTSTwo strains were isolated from mosquitoes causing cytopathogenic effect (CPE) on cells and were fatal to suckling mice. Serological tests showed that both were positive for the antibody to JEV. The PrM and E gene were cloned and sequenced. The phylogenetic analysis showed that the new isolates belonged to genotype I, JEV. Sequence analysis showed that the homology of nucleotide sequences and amino acid (AA) sequences between the two strains was 100%. Compared with the nucleotide sequences between the two strains and the standard JEV vaccine strain SA14-14-2, the difference was up to 4.11%, and the difference of AA was 0.6%.
CONCLUSIONTwo strains of JEV were isolated and identified in Liaoning province, both belonged to genotype I JEV.
Animals ; Cell Line ; Cercopithecus aethiops ; China ; Culicidae ; virology ; Encephalitis Virus, Japanese ; classification ; genetics ; isolation & purification ; Phylogeny ; Sequence Analysis, DNA ; Vero Cells ; Viral Envelope Proteins ; genetics