1.Mechanism of "treating heart and brain with same methods" based on data science.
Di CHEN ; Shi-huan TANG ; Peng LU ; Hong-jun YANG
China Journal of Chinese Materia Medica 2015;40(21):4288-4296
The traditional Chinese medicine (TCM) theory of "treating heart and brain diseases with same methods (Nao Xin Tong Zhi: NXTZ)" has great significance to the treatment of cardiovascular and cerebrovascular diseases. It has been proven effective by a great deal of clinical researches. However, the underlying mechanism for this theory is still unclear. To provide insights into the potential mechanism of "NXTZ", this study attempts to deeply investigate the mechanism from two representative cardiovascular and cerebrovascular diseases, coronary heart disease (CHD) and cerebral apoplexy. First, various data resources were integrated to obtain different types of biomedical entities including drugs, targets, pathways and diseases. Then, three different approaches including text mining, biological network and enrichment analysis were utilized to recognize the potential common features between CHD and cerebral apoplexy, and the corresponding functions of drugs which could treat both diseases, thus unveiling the mechanism of NXTZ.
Brain
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drug effects
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Coronary Artery Disease
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drug therapy
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genetics
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metabolism
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Databases, Bibliographic
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Drugs, Chinese Herbal
;
therapeutic use
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Heart
;
drug effects
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Humans
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Stroke
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drug therapy
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genetics
;
metabolism
2.Study on Changes of LFA-1 Level in Peripheral Neutrophils in Patients with Severe Preeclampsia
Jun WEI ; Wei WANG ; Huan TANG ; Xiaozhu WU ; Caixia LIU
Journal of China Medical University 2015;(3):263-266
Objective To check the neutrophil count and the expression of cell surface adhesion molecule,lymphocyte function associated antigen?1(LFA?1)in peripheral neutrophils in severe preeclamptic patients and normal pregnant women in order to investigate the correlation of neutrophil activation with preeclampsia. Methods Totally 28 pregnant women in the department of gynecology and obstetrics in Shengjing Hospital from No?vember 2013 to January 2014 were included in the study,and divided into the severe preeclampsia group(n=14),and the control group(normal pregnant women,n=14). There was no statistically significant difference in age and gestational weeks between the two groups. The expression of LFA?1 in peripheral neutrophils was detected by flow cytometry in the two groups. Mean blood pressure(MBP)was measured in the severe preeclamptic group,and the correlation of MBP with expression of LFA?1 was analyzed. Results The neutrophil count was 8.40±2.23 ×109/L in the severe pre?eclamptic group,significantly higher than(6.71±1.58)×109/L in the control group,(P<0.05). The positive rate of LFA?1 in peripheral neutrophils was 63.25±38.025%in the severe preeclamptic patients,significantly higher than 8.32±38.65%in the control group(P<0.05). The expression lev?el of LFA?1 in peripheral neutrophils was significantly correlated with mean blood pressure in severe preeclamptic patients(r=0.64,P=0.013). Conclusion The neutrophil count and the expression of LFA?1 in peripheral neutrophils were significantly increased in severe preeclamptic pa?tients compared to normal pregnant women,and significantly correlated with severity of preeclampsia,suggesting that neutrophil activation participat?ed in the pathogenesis of preeclampsia.
3.Analysis on medication regularity of Chinese patent medicines containing Scutellaria baicalensis.
Qiang JIA ; Dan SHEN ; Shi-Huan TANG ; De-Feng LI ; Yi ZHANG ; Hong-Jun YANG
China Journal of Chinese Materia Medica 2014;39(4):634-639
To analyze the composition regularity of prescriptions containing Scutellaria baicalensis in Drug Standard of Ministry of Public Health of the Peoples Republic of China--Chinese Patent Medicines and Preparations on the basis of the traditional Chinese medicine inheritance support system (TCMISS), in order to provide reference for new drug R&D. the platform's software V2.0 was applied to establish a database of prescriptions containing S. baicalensis. The software's statistical statement module, association rules and improved mutual information method and other data mining technologies were adopted to analyze commonly used drugs, combination rules and core combination of S. baicalensis prescriptions. Having analyzed 477 prescriptions containing S. baicalensis, the researchers summarized 45 most commonly used drug combinations, whose ingredients mostly had functions of heat-clearing and damp-drying, purging fire for removing toxin and hemostasis. Drugs adopted in core combinations were relatively concentrated and selected according to definite composition methods. There were 23 diseases that S. baicalensis were most frequently applied in the treatment. Having compared three highly frequent diseases--cold, cough and dizziness, the researchers concluded that S. baicalensis could show different therapeutic effects through different combination ratios. Therefore, TCMISS (V2.0) is an important tool in analyzing the composition regularity of traditional Chinese medicines. The longitudinal and parallel comparison method is an effective method for studying the clinical composition regularity of S. baicalensis, while providing reference for new drug R&D.
China
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Drug Compounding
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statistics & numerical data
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Drug Therapy
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statistics & numerical data
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Humans
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Plant Extracts
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analysis
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therapeutic use
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Scutellaria baicalensis
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chemistry
4.Rethinking on application of "syndrome differentiation through formula effect assessment".
Shi-huan TANG ; Hong-jun YANG ; Lu-qi HUANG
Chinese Journal of Integrated Traditional and Western Medicine 2007;27(3):259-262
By summarizing the state of application of "syndrome differentiation through formula effect assessment", it was pointed out that several problems exist in this kind of study, mainly the irrational setting of experimental control group, over simplified pharmacodynamic indexes, and negligence of study on "correspondence between drug and disease", etc. The authors proposed accordingly the thinking methods and strategy in the study on "syndrome differentiation through formula effect assessment" should be setting control properly, taken "correspondence between disease and syndrome" as the key point, and to define clearly the criteria for evaluating the efficacy of formula as the premise.
Diagnosis, Differential
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Drugs, Chinese Herbal
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therapeutic use
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Female
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Humans
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Male
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Medicine, Chinese Traditional
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methods
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Phytotherapy
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Research Design
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Syndrome
5.Observation on the change of electrode impedance and THR/MCL values in 20 cases with Med-EL Combi 40+ cochlear implant.
Wenjin WU ; Huan JIA ; Yun LI ; Zhijian TANG ; Qi HUANG ; Jun YANG ; Ling MEI ; Zhiwu HAUNG ; Hao WU
Journal of Clinical Otorhinolaryngology Head and Neck Surgery 2013;27(22):1238-1242
OBJECTIVE:
To investigate the changes of electrode impedance, THR/MCL values, and dynamic range (DR) in Combi 40+ cochlear implant after implantation.
METHOD:
A respective study was carried out collecting 20 consecutively implanted children's electrode impedances, THR/MCL values, and DR at seven time point during the first three years after implantation. Their variation and correlations were analyzed.
RESULT:
Overall, electrode impedances were lowest during the operation, and significantly rise to the highest at the first stimulation, then followed by a gradual decrease. After three months, electrode impedance of apical and medial cochlear segment were basically stable, while that of the basal segment was gradually increased. Dynamic range (DR) of apical and medial group electrode increased early after the operation and showed a stabilization from the second year, whereas that of basal group have a downward trend since the first year. However, the electric charge of each group increased significantly after three months, and then become stable after first year. Otherwise, a stronger negative rectilinear correlation was found between impedance changes with DR than with THR/MCL level.
CONCLUSION
The electrode impedances vary clue to different electrode position. Measuring the electrode impedance can effectively evaluate the working status of Combi C40+ cochlear implant. The dynamic range of the electrode was negatively correlated with the impedances, which made it possible to predict the width of the dynamic range by measuring the impedance 3 or 6 months after operation.
Auditory Threshold
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Child
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Child, Preschool
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Cochlear Implantation
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Cochlear Implants
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Electric Impedance
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Electrodes
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Female
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Hearing Loss
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physiopathology
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rehabilitation
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Humans
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Male
6.Effects of rhG-CSF on mobilization of mouse mesenchymal stem cells.
Qi-Huan LIU ; Fan-Jun CHENG ; Long CHEN ; Jun-Ming TANG ; Jia-Ning WANG ; Qing-Ping GAO
Journal of Experimental Hematology 2007;15(4):790-794
To evaluate the effects of rhG-CSF on mobilization of mesenchymal stem cells (MSCs) of mouse bone marrow at different time point, thirty mice were randomly divided into rhG-CSF treatment group and control group. The mice were subcutaneously injected with rhG-CSF in a dose of 80 microg/kg or saline for 5 days. The bone marrow and peripheral blood were obtained at time points of 6, 12, 168 hours after final injection of rhG-CSF or saline. Bone marrow mononuclear cells (BMMNCs) were seeded at density of 1 x 10(6) MNCs onto 12-well plate for culture expansion in DMEM supplemented with 10% FBS, and the number of colony forming unit - fibroblast (CFU-F) was counted after 14 days. The cells were collected by trypsinization and the surface antigens CD34, CD133, CD90 and CD105 were analyzed by flow cytometry. The multi-differentiation of MSCs were done in the culture condition of induced-adipocyte and osteocyte. Peripheral blood MNCs examination was same as the bone marrow. The results indicated that the number of CFU-F of bone marrow in rhG-CSF group was more than that in control group (p < 0.01), the number of CFU-F in rhG-CSF group at 6 hours was more than that at 12 hours and 168 hours, respectively (p < 0.01). There was no obvious difference between CFU-F at 12 hours and at 168 hours (p > 0.05). MSCs were positive for CD90, CD105 and negative for CD34 and CD133. MSCs were found to differentiate into adipocyte and osteocyte in vitro. The CFU-F of PBMNCs obtained and cultured in vitro in the same culture conditions could be observed after the rhG-CSF injection at 6 hours, but cloning efficiency was (0.50 +/- 0.11) x 10(-6) MNCs and showed statistical difference as compared with control. It is concluded that rhG-CSF to mobilize hemopoietic stem cells can be used to induce mouse MSCs in vivo expansion, which showed the peak value within 6 hours after final injection of rhG-CSF. rhG-CSF have the mini-mobilization effect on murine MSCs derived from bone marrow.
Animals
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Cells, Cultured
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Female
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Granulocyte Colony-Stimulating Factor
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pharmacology
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Hematopoietic Stem Cell Mobilization
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Mesenchymal Stromal Cells
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cytology
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Mice
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Random Allocation
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Recombinant Proteins
7.Analysis on composition principles of Chinese patent drugs containing ginseng.
Dan SHEN ; Shi-Huan TANG ; Peng LU ; Hong-Jun YANG
China Journal of Chinese Materia Medica 2013;38(12):2027-2032
Use traditional Chinese medicine inheritance support system (TCMISS) to analyze the composition principles of Chinese patent drugs containing Renshen (Panax ginseng) in national standard for Chinese patent drugs (NSCPD) enacted by Ministry of Public Health of China. Via analyzing the regularity of prescriptions containing Ginseng which are recorded in NSCPD, to identify composition pattern and rule. Tweenty four drugs are used more than 50 times, in which, drugs that tonify qi and nourish flood have the highest frequency, and then medicines of liver and kidney tonifying, yin enriching and yang warming follow. Then 45 commonly used core combinations are analyzed via data mining methods such as association rules, improved mutual information method, etc. Meantime, three diseases, namely, palpitation, amnesia and chest discomfort are chosen from the 24 diseases that Ginseng most frequently used to make deeper analysis, which reflect the composition principle of Chinese patent drugs containing Ginseng. Therefore, TCMISS is an important tool in composition principle exploring of herbal formulae and meanwhile, the comparative analysis method contributes a lot to the exploration as well.
Medicine, Chinese Traditional
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Panax
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chemistry
8.Molecular mechanism research on simultaneous therapy of brain and heart based on data mining and network analysis.
Di CHEN ; Peng LU ; Fang-Bo ZHANG ; Shi-Huan TANG ; Hong-Jun YANG
China Journal of Chinese Materia Medica 2013;38(1):91-98
OBJECTIVEThe theory of treating heart and brain simultaneously is from the theory of traditional Chinese medicine, and there aren't enough explanations for this theory from the perspective of molecular mechanism. As one successful case of this theory, the Chinese medicine formula--Buchang Naoxintong can achieve the goal of treating coronary heart disease and stroke at the same time. To illustrate the mechanism of the theory of treating heart and brain simultaneously, it is necessary to find out the molecular mechanism of this formula.
METHODUsing the network analysis method, together with two data mining methods-clustering and apriori algorithm, the frequent gene combinations interfered by the chemicals of the formula based on the protein-protein interaction networks related with coronary heart disease and stroke disease were figured out respectively. To find out the molecular mechanism of the theory of treating heart and brain simultaneously, the results got from two diseases were compared and analyzed.
RESULTBased on comparing two results from these two different diseases, the mechanism of the theory of treating heart and brain simultaneously was explained from molecular level by finding out key genes targeted by the components of this formula for both diseases and some particular genes interfered by the components for each disease. In addition, genes interfered indirectly by the chemicals for different diseases were found out based on the protein-protein interaction network.
CONCLUSIONIt can help to explain the molecular mechanism of the theory by our methods. By finding out the molecular mechanism of this theory, it can promote the progress of combination of Chinese traditional and Western medicine.
Coronary Disease ; drug therapy ; genetics ; metabolism ; Data Mining ; Drugs, Chinese Herbal ; administration & dosage ; Humans ; Protein Binding ; Protein Interaction Maps ; drug effects ; Stroke ; drug therapy ; genetics ; metabolism
9.Extraction of total RNA and cloning of sgDHAR gene from Siraitia grosvenorii.
Rong-Chang WEI ; Huan ZHAO ; Xiao-Jun MA ; Ke MI ; Chang-Ming MO ; Li-Mei PAN ; Long-Hua BAI ; Qi TANG
Acta Pharmaceutica Sinica 2014;49(1):115-123
Total RNA was isolated from Siraitia grosvenorii fruit by the method of modified Trizol, according to S. grosvenorii fruit characteristics of rich phenols, polysaccharide, oil and proteins. The OD260/280, OD260/230, RNA integrity (RIN) and yield of the total RNA with this method were 2.01, 2.02, 9.50 and 260 mirog.g-1, respectively. The open reading frame (ORF) of dehydroascorbate reductase (DHAR), named as SgDHAR, was cloned by rapid amplification of cDNA ends (RACE) and RT-PCR method from S. grosvenorii. The GenBank accession number for this gene is KC907731. The SgDHAR gene contains a full-length cDNA of 1,252 bp including ORF of 819 bp and encodes a predicted protein of 272 amino acids. The molecular mass is 30.217 7 kD and the isoelectric point is 8.76. Homology comparison showed that it shared 87% nucleotide sequence homology with Cucumis sativus. Expression patterns using qRT-PCR analysis showed that SgDHAR was mainly expressed in fruit and stem, followed by flower, and was lowest in root, while the expression level was 6.83 times in triploid. T than that in diploid. Therefore, SgDHAR gene may be involved in abortion of triploid seedless S. grosvenorii.
Amino Acid Sequence
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Base Sequence
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Cloning, Molecular
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Cucurbitaceae
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chemistry
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genetics
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DNA, Complementary
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genetics
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Flowers
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chemistry
;
genetics
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Fruit
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chemistry
;
genetics
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Molecular Conformation
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Open Reading Frames
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Oxidoreductases
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genetics
;
metabolism
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Phylogeny
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Plant Roots
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chemistry
;
genetics
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Plant Stems
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chemistry
;
genetics
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Plants, Medicinal
;
chemistry
;
genetics
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Protein Structure, Secondary
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RNA, Plant
10.Studies and reports of Chinese cut crude drugs dosage in clinical prescription of traditional Chinese medicine (section of pediatrics).
Hong-Jun YANG ; Shi-Huan TANG ; Lu-Qi HUANG ; Chao-Fan ZHOU
China Journal of Chinese Materia Medica 2008;33(20):2395-2400
OBJECTIVEStudy the actual dosage of clinical prescription in pediatrics of traditional Chinese medicine (TCM), and offer the consummate data for formulating the dosage standard of Chinese cut crude drug.
METHODWe made use of the methods of stratified sampling and random sampling to investigate 38 736 broth prescriptions of pediatrics of TCM in 21 various hospitals, 18 provinces, and constructed the database, then applied Weka KDD software to analyze.
RESULTWe identified the frequency and clinical dosage intervals of 300 drugs, and the practical dosage of 155 drugs. Most of drug's dosage centralized the four intervals: (3-6], (6-9], (9-12], (12-15], and the concrete dosage were 6, 9, 10, 12, 15 g, etc.
CONCLUSIONThe dosages in the pharmacopoeia are not coincided with the practical dosages in pediatrics, and demand to revise. This paper will offer the consummate data for formulating the new dosage standard.
Adolescent ; Child ; Child, Preschool ; Dosage Forms ; Humans ; Medicine, Chinese Traditional ; methods ; Pediatrics ; methods ; Prescriptions