2.Application of Ion Torrent PGM™ System in Detection of Fetal DNA in Maternal Plasma.
Ya-nan LIU ; Xue-ying ZHAO ; Yuan PING ; Qing-wen XU ; Jiang-ping HUANG ; Kai-nan ZOU ; Huai-gu ZHOU
Journal of Forensic Medicine 2015;31(6):432-435
OBJECTIVE:
To explore the feasibility of detecting of Y-STR of fetal DNA in maternal plasma using Ion Torrent PGM™ System.
METHODS:
A total of 16 fetal DNA samples from maternal plasmas (8 cases from 38 weeks gestational age and 8 ones from 12 weeks) were prepared and a multiplex assay with 7 STR loci (DYS390, DYS391, DYS393, DYS438, DYS437, DYS456, DYS635) was designed for multiplex-PCR amplification. Using Ion Torrent PGM™ System, the results of Y-STR sequences and capillary electrophoresis were obtained and compared.
RESULTS:
Y-STR specific alleles were detected in the maternal plasma of all the pregnant women having male babies of second and third trimester, which were higher than that detected by capillary electrophoresis. Consistent Y-STR genotypes were observed between fetal DNA from maternal plasma and genomic DNA from the newborn babies.
CONCLUSION
Based on Ion Torrent PGM™ System, the prenatal Y-STR detection method may provide a high-sensitive and high-throughput choice for prenatal STR detection in forensic testing.
Alleles
;
Chromosomes, Human, Y/genetics*
;
DNA/blood*
;
Family
;
Female
;
Fetal Blood/chemistry*
;
Genotype
;
Haplotypes
;
Humans
;
Male
;
Polymerase Chain Reaction
;
Polymorphism, Genetic
;
Pregnancy
;
Sensitivity and Specificity
;
Sex Determination Analysis
;
Tandem Repeat Sequences/genetics*
3.Effect of PCR reaction volume on the accuracy of human identification tests.
Huai-gu ZHOU ; Yuan PING ; Qing-wen XU
Journal of Forensic Medicine 2002;18(3):155-159
OBJECTIVE:
To investigate the effect of different PCR amplification volume on the accuracy of human identification test.
METHODS:
Human genome DNA samples were amplified using ABI PRISM Profiler Plus kits in 50 microliters, 25 microliters, 12.5 microliters, and 6.25 microliters reaction volume, respectively. The thermocycle parameters were the same. All PCR products were then electrophoresized on ABI PRISM 310 Genetic Analyzer, 377 DNA Sequencer, and 3100 Genetic Analyzer. Data were processed by ABI PRISM GeneScan and Genotyper software.
RESULTS:
The less reaction volume, the more alleles losing or alleles adding observed.
CONCLUSION
Non-standard volume of PCR amplification reaction should be used carefully in human identification test, especially when the sample DNA quality is not so satisfied.
Alleles
;
Blood Stains
;
DNA/isolation & purification*
;
Electrophoresis
;
Forensic Medicine
;
Humans
;
Loss of Heterozygosity
;
Polymerase Chain Reaction/methods*
;
Sensitivity and Specificity
;
Spectrophotometry, Ultraviolet
4.Epidemiology investigation on arsenism from drinking water along Huai'he River and the surrounding area of Hong'ze lake in Huai'an city of Jinngsu province in 2008
Cong-ying, JIA ; Wen-zhou, YANG ; Huai-rong, ZHAO ; Wei, HU ; Yi, WANG ; En-chun, PAN ; Shou-guo, YUAN ; Dao-kuan, SHUN ; Si-hong, CHEN ; Yong, TANG
Chinese Journal of Endemiology 2010;29(1):74-76
Objective To explore the distribution of water with high level arsenic and prevalence of arsenism along Huai'he River and the surrounding area of Hong'ze lake in Huai'an of Jiangsu. Methods Wate rsamples were collected and tested in 2008 from 18 villages of 6 towns according to history data in 3 counties like Xuyi,Jinhu and Hongze. Samples having arsenic level higher than 0.05 mg/L were investigated by epidemiological method and the patients were diagnosed by Standard of Diagnosis for Endemic Arsenism. Results All 5199 water samples were determined,and 260 water samples were exceeding the national drinking water quality level (0.05 mg/L) in 3 counties,the rates of exceeding diagnosis were 5.6%(247/4454),0.7%(4/597),6.0%(9/148) respectively. Total detected rate of endemic arsenic disease was 5.94%(128/2155). The detected rates of age group of 0 ~ ,20 ~,30 ~ ,40 ~ ,50 ~ ,60 ~ ,70 ~ ,80 ~ were 2.86%(1/35),2.11%(2/95),1.26%(3/239),3.10%(16/516),5.53% (32/579),10.07%(41/407),11.84%(27/228),10.71%(6/56) respectively. The detected rate of male (9.10%,78/857) was higher than that of female(3.85%,50/1298,χ~2 = 25.46,P < 0.01). Conclusions Huai'he River and the surrounding areas of Hong'ze lake like Xuyi,Jinhu and Hongze are identified existing endemic arsenic disease area. The prevention of arsenism should be strengthened in these areas.
5.Development of a Forensic Multiplex Amplification STR Kit for 15 Autosomal STR Loci and 10 Y-STR Loci.
Yan DONG ; Shuang-shuang LIN ; Yu CAO ; Wei-wei WU ; Shu-qin HUANG ; Wei-guo ZHENG ; Fa-yuan LI ; Bin-wen GE ; Yu-lin GUO ; Huai-gu ZHOU
Journal of Forensic Medicine 2015;31(5):373-380
OBJECTIVE:
To establish a multiplex STR genotyping method for autosomal STR and Y-STR loci in forensic biological practice.
METHODS:
Widely used autosomal STR loci and Y-STR loci were selected. A set of PCR primers was designed, and a 5-dye fluorescent labeled STR multiplex PCR reagent kit was developed.
RESULTS:
A kit was developed which can simultaneously detect 15 autosomal STR loci, 10 Y-STR loci, and an Amelogenin.
CONCLUSION
The 15 autosomal STR plus 10 Y-STR kit in combination with capillary electrophoresis method was used to STR genotyping with accurate and reliable results. The new one-step testing kit can potentially be widely used in forensic cases and DNA databank in the future.
Amelogenin
;
Chromosomes, Human, Y/genetics*
;
DNA Primers
;
Databases, Nucleic Acid
;
Forensic Genetics/methods*
;
Genotype
;
Genotyping Techniques/instrumentation*
;
Humans
;
Indicators and Reagents
;
Microsatellite Repeats
;
Multiplex Polymerase Chain Reaction
6.Left ventricular function in newborn infants of mothers with gestational diabetes mellitus.
Wei-Qiang LIAO ; Huai-Yuan ZHOU ; Guan-Chun CHEN ; Min ZOU ; Xing LV
Chinese Journal of Contemporary Pediatrics 2012;14(8):575-577
OBJECTIVETo evaluate left ventricular function in newborn infants of mothers with gestational diabetes mellitus (GDM).
METHODSForty newborn infants of mother with GDM (GDM group) and forty normal newborn infants (control group) were enrolled in this study. Two-dimensional speckle tracking imaging was used to measure interventricular septal thickness, posterior left ventricular wall thickness and left ventricular ejection fraction in both groups. Left ventricular rotation and torsion were evaluated for all participants.
RESULTSInterventricular septal thickness in the GDM group was much higher than in the control group (0.45±0.06 mm vs 0.34±0.05 mm; P<0.05). Posterior left ventricular wall thickness in the GDM group was also higher than in the control group (0.45±0.17 mm vs 0.31±0.02 mm; P<0.05). There was no difference in the left ventricular ejection fraction between the two groups (P>0.05). Peak subendocardial rotation, peak subepicardial rotation, peak bulk rotation and peak mural torsion were higher in the GDM group than in the control group (P<0.05).
CONCLUSIONSCardiac function may be impaired in newborn infants of mothers with GDM, with changes in left ventricular shape and abnormalities of left ventricular rotation and torsion. However, infants have a normal ventricular blood ejection under the cardiac compensation. Two-dimensional speckle tracking imaging technique can be used for early detection of left ventricular function.
Diabetes, Gestational ; physiopathology ; Female ; Humans ; Infant, Newborn ; Male ; Pregnancy ; Stroke Volume ; Ventricular Function, Left
7.High-field intraoperative magnetic resonance imaging suite with neuronavigation system: implementation and preliminary experience in the pituitary adenoma operation with transsphenoidal approach.
Xiang-hui MENG ; Bai-nan XU ; Shao-bo WEI ; Tao ZHOU ; Xiao-lei CHEN ; Xin-guang YU ; Ding-biao ZHOU ; Huai-yu TONG ; Jia-shu ZHANG ; Yan ZHAO ; Yuan-Zheng HOU
Chinese Journal of Surgery 2011;49(8):703-706
OBJECTIVESTo review the preliminary clinical experience with high-field-strength intraoperative magnetic resonance imaging (iMRI) suite with neuronavigation system in the pituitary adenoma operation with transsphenoidal approach.
METHODSFrom March 2009 to December 2010, 31 patients [range, 29 - 76 years, mean age (47 ± 11) years]of pituitary adenoma were operated with transsphenoidal approach and intraoperatively with a movable 1.5 T high-field-strength iMRI suite in combination with neuronavigation system. Tumor size was 1.8 - 7.3 cm, mean (3.5 ± 1.2) cm. Twenty-five cases were non-functional pituitary adenoma, 4 cases were prolactin-secreting pituitary adenoma, 2 cases were growth hormone-secreting pituitary adenoma. Thirty patients' resection with transnasal transsphenoidal approach were performed, one patient with transoral transsphenoidal approach was performed.
RESULTSIn 12 cases of 30 patients who planed to totally remove tumor, iMRI had revealed residual lesions and resulted in the change of the surgical strategy, 2 invasive cavernous sinus cases no further resection of the tumor because of internal carotid artery encasement, the other 10 cases resected further, eventually. Finally, 8 cases were totally removed. The ratio of total removal tumor was enhanced to 86.7% (26/30) from 60.0% (18/30). There was no perioperative mortality.
CONCLUSIONSHigh-field-strength iMRI suite with neuronavigation system provides valuable information of tumor resection that allows intraoperative modification of the surgical strategy. It could be very helpful to maximize the resection of the pituitary adenoma and minimize the injury to neurological function.
Adenoma ; surgery ; Adult ; Aged ; Cavernous Sinus ; surgery ; Female ; Humans ; Magnetic Resonance Imaging ; methods ; Male ; Middle Aged ; Monitoring, Intraoperative ; methods ; Neuronavigation ; methods ; Pituitary Neoplasms ; surgery
8.Analysis of rs4420638A/G and -317H1/H2 polymorphisms of APOC1 gene among Chinese patients with pre-eclampsia.
Yuan SUN ; Ping FAN ; Qingqing LIU ; Huai BAI ; Xinghui LIU ; Mi ZHOU ; Yujie WU ; Linbo GUAN ; Suiyan LI
Chinese Journal of Medical Genetics 2020;37(7):774-778
OBJECTIVE:
To assess the association of apolipoprotein (apo) C1 (APOC1) gene rs4420638A/G and -317H1/H2 polymorphisms with the risk of pre-eclampsia (PE) and the influence of their genotypes on the clinical and metabolic indexes among Chinese women.
METHODS:
In total 289 PE patients and 824 women with uncomplicated pregnancies were included. The rs4420638A/G genotype was determined by a Taqman real-time PCR allelic discrimination assay. The -317H1/H2 genotype was measured through PCR and restriction fragment length polymorphism analysis. Serum lipid and apo levels were measured by an enzymatic kit and a PEG-enhanced immunoturbidimetric assay.
RESULTS:
Allelic and genotypic frequencies of the APOC1 gene rs4420638A/G and -317H1/H2 were not significantly different between the two groups (all P> 0.05). However, patients carrying the G allele of the rs4420638A/G locus had higher serum levels of triglyceride, non-HDL-C and apoB, and a higher apoB/apoA1 ratio compared with those with an AA genotype (all P< 0.05). Patients carrying the H2 allele of the -317H1/H2 polymorphism had smaller delivery gestational weeks compared with those with the H1H1 genotype (P< 0.05).
CONCLUSION
Polymorphisms of the APOC1 gene rs4420638 and -317H1/H2 sites may be associated with abnormal lipoprotein metabolism among Chinese patients with PE, though no association was found between variants of the APOC1 gene and the risk of PE among them.
9.Rapid DNA identification using 6+1 STR kit and EX-Q20 electrophoresis.
Yuan PING ; Huai-Gu ZHOU ; Yan XU ; Zi-Fang XIA ; Wei-Guo ZHENG
Journal of Forensic Medicine 2011;27(6):444-446
OBJECTIVE:
To establish a rapid STR genotyping method for individual identification.
METHODS:
Two hundred blood samples from FTA were collected. Equal amount of blood were collected by puncher and analyzed using two methods (6+1 STR kit in combination with EX-Q20 electrophoresis and Sinofiler kit in combination with POP4 electrophoresis). Consuming time and results of two methods were compared.
RESULTS:
6+1 STR kit in combination with EX-Q20 electrophoresis method can obtain all genotyping results and be shorter time.
CONCLUSION
6+1 STR kit in combination with EX-Q20 electrophoresis method is used to STR genotyping with accurate, reliable results and this new method is potential value in mass personnel investigation and comparison in major criminal cases. It also can raise the work efficiency.
Alleles
;
Blood Stains
;
DNA/genetics*
;
DNA Fingerprinting/methods*
;
DNA Primers
;
Electrophoresis, Capillary/methods*
;
Forensic Medicine/methods*
;
Genotype
;
Genotyping Techniques/methods*
;
Humans
;
Polymerase Chain Reaction/methods*
;
Reagent Kits, Diagnostic
;
Reproducibility of Results
;
Tandem Repeat Sequences
10.Changes of serum leptin and vascular endothelial growth factor in children with congenital heart disease.
Yuan-Hai ZHANG ; Ru-Lian XIANG ; Xing-Ti HU ; Huai-Kai WEN ; Mao-Ping ZHU ; Yue REN ; Rong-Zhou WU ; Qi CHEN
Chinese Journal of Contemporary Pediatrics 2009;11(10):802-804
OBJECTIVETo study the changes of serum leptin (LEP) and vascular endothelial growth factor (VEGF) in children with congenital heart disease(CHD) and their roles in CHD.
METHODSForty-eight children with acyanotic CHD (ACHD group), 20 age-matched children with cyanotic CHD (CCHD group) and 20 healthy children (control group) were enrolled. The ACHD group was subdivided into two groups with (n=20) or without concurrent heart failure (n=28). Serum LEP, VEGF, total protein and albumin levels and body mass index (BMI) were measured.
RESULTSSerum total protein and albumin levels were not apparently different in all CHD children from healthy controls, but there was a significant difference in the BMI between them (p<0.01). Serum LEP and VEGF levels and the ratio of LEP/BMI in all CHD children were significantly higher than those in healthy controls (p<0.01). Compared with the ACHD group without heart failure, the serum LEP and VEGF levels and the ratio of LEP/BMI in the CCHD and the ACHD with heart failure groups increased significantly (p<0.01). In the ACHD group, serum LEP level was positively correlated with BMI (p<0.01). In the CCHD group, there were positive correlations between serum LEP level and serum VEGF level (p<0.01) and between hemoglobin concentration and serum VEGF level (p<0.01). Arterial oxygen saturation was negatively correlated with serum VEGF (p<0.01) and LEP levels (p<0.01) in the CCHD group.
CONCLUSIONSBoth VEGF and LEP play roles in the pathophisiological process of CHD. VEGF and LEP are associated with the development of heart failure in children with ACHD.
Body Mass Index ; Child ; Child, Preschool ; Female ; Heart Defects, Congenital ; blood ; Hemoglobins ; analysis ; Humans ; Infant ; Leptin ; blood ; Male ; Oxygen ; blood ; Vascular Endothelial Growth Factor A ; blood