1.Construction of a broad host range expression plasmid vector by Golden Gate cloning
Yuh Leng Teo ; Wai Keat Toh ; Xin Yen Tor ; Chai-Ling Ho ; Pek Chin Loh ; Hann Ling Wong
Malaysian Journal of Microbiology 2021;17(5):588-592
Aims:
Expression of recombinant proteins across a range of different host organisms has profound contribution to the advancement in biotechnology. In this study, we aimed to construct a highly versatile broad host range (BHR) expression vector, designated as pYL101C.
Methodology and results:
The Golden Gate cloning approach was used to construct pYL101C. Key features of pYL101C include a strong integron promoter (PINTc), a BHR pBBR1 origin of replication (ori), gentamycin resistance gene (GmR) as a selectable marker and a multiple cloning site (MCS) downstream of the promoter for easy-cloning purpose. To verify the functionality of pYL101C, we cloned the superfolder green fluorescent protein (sfGFP) reporter gene into pYL101C and transferred the resultant recombinant plasmid pYL101C::sfGFP into various Gram-negative bacteria. Transformants obtained stably expressed strong green fluorescence under blue light excitation even without selection after four passages.
Conclusion, significance and impact of study
The constructed BHR expression vector, pYL101C and recombinant pYL101C::sfGFP are stable and can be used to monitor the presence of Gram-negative bacteria, such as endophytes and pathogens in their hosts and environment.
Host Specificity
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Plasmids
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Cloning, Molecular
2.Taxonomic Studies on the Genus Marssonina in Korea.
Hyun Tae LEE ; Hyeon Dong SHIN
Mycobiology 2000;28(1):39-46
Eight species of Marssonina parasitic on 21 species of host plants from Korea are described and illustrated. They are Marssonina brunnea (Ellis & Everh.) Magnus, M. capsulicola (Rostr.) Magnus, M. celastri H.D. Shin & H.T. Lee, M. coronaria (Ellis & Davis) Davis, M. fragariae (Lib.) Kleb., M. juglandis (Lib.) Magnus, M. rosae (Lib.) Died. and M. sennenis (Gonz. Frag.) Vassiljevsky & Karak. Of these, M. capsulicola and M. coronaria sometimes poss three-celled conidia and M. sennenis is characterized by a short appendage at the basal end of the conidia. Morphological features of conidia and host ranges were of taxonomic values for species delimitation.
Fragaria
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Host Specificity
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Korea*
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Rosa
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Spores, Fungal
3.Phage Typing of Staphylococcus intermedius Isolated from Canine Clinical Specimens.
Cheong Kyu PARK ; Sung Kuk KIM ; Young Ju LEE ; Sang Geon YEO ; Ki Seuk KIM
Journal of Bacteriology and Virology 2005;35(3):191-196
Bacteriophages were induced from staphylococcus intermedius isolates from dogs and used for a phage typing. Mitomycin C induction was performed on 60 strains of S. intermedius and all phages were reacted with the strains. Twenty-eight strains (46.7%) were found to be lysogenic. Based on host ranges, eight phages were selected. By using the eight phages, 129 strains isolated from canine clinical specimens were subjected to the phage typing at the routine test dilution (RTD) and 100xRTD. Typability of the phage set was 78.3%, yielding 40 phage patterns. The phage set was considered useful for differentiating S. intermedius strains isolated from dogs. None of 50 strains of S. aureus, 2 (3.6%) of 56 S. simulance strains, 13 (24.5%) of 53 S. chromogenes strains and 46 (28.1%) of 164 S. hyicus strains were typable by the phages at 100xRTD.
Animals
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Bacteriophage Typing*
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Bacteriophages*
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Dogs
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Host Specificity
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Mitomycin
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Staphylococcus intermedius*
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Staphylococcus*
4.A Case of Human Infestation of Canine Scabies.
Bo Mi CHUN ; Ju Hyuk PARK ; Young HER ; Chul Woo KIM ; Sang Seok KIM
Korean Journal of Dermatology 2009;47(1):104-107
Transmission of animal scabies to human is probably rare because of the relative host specificity of the mites. However, recurrent exposure to animal scabies mites can produce troublesome and diagnostically puzzling lesions. We report herein on a human infestation of canine scabies and this occurred in a 26-year-old male who presented with a 4-month history of severe pruritic skin lesions. His puppy was diagnosed with scabies infestation by a veterinarian two months previously. Since that time, he no longer raised the puppy. Microscopic examination of a mineral oil preparation after scraping the papules revealed a mite. He was diagnosed with canine scabies.
Adult
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Animals
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Host Specificity
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Humans
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Male
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Mineral Oil
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Mites
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Scabies
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Skin
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Veterinarians
5.Characteristics and Pathogenicity of Host Range Expanded Recombinant Viruses in Insect Cells.
Hye Sung KIM ; Soo Dong WOO ; Woo Jin KIM ; Jae Young CHOI ; Byung Rae JIN ; Youn Hyung LEE ; Seok Kwon KANG
Journal of the Korean Society of Virology 1997;27(1):29-37
To use recombinant viruses with wider host range as viral insecticides, we investigated the characteristics and pathogenicity of host range expanded recombinant viruses in insect cells. We compared host range expanded recombinant viruses, RecS-B6 and RecB-8, constructed by cotransfection of Autographa californica nuclear polyhedrosis virus (AcNPV) and Bombyx mori NPV (BmNPV), to host range expanded AcNPV, Ac-BH, by substitution of the 0.6 Kb fragment of the BmNPV helicase gene. Restriction endonuclease profiles of RecS-B6 and RecB-8 DNAs were different from those of parent viruses. Nucleotide sequence analysis of the 0.6 Kb region in the putative helicase gene of RecS-B6 and RecB-8 showed that their structures were identical to the counterpart region of BmNPV Comparison of viral replication of these recombinant viruses in Sf-21 and BmN-4 cells showed that Ac-BH, compared to wild type viruses, replicated well in BmN-4 cells but poorly in Sf-21 cells. In contrast, RecS-B6 and RecB-8 replicated relatively well in both cells compared to parent viruses. These results may imply that random genomic recombinant viruses, RecS-B6 and RecB-8, possess better potential as viral pesticides than helicase-mediated recombinant virus, Ac-BH.
Base Sequence
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Bombyx
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DNA
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DNA Restriction Enzymes
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Host Specificity*
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Humans
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Insecticides
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Insects*
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Nucleopolyhedrovirus
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Parents
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Pesticides
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Virulence*
6.Epidemiology of Zoonoses.
Journal of the Korean Medical Association 2004;47(11):1019-1034
Zoonoses are diseases caused by the agents that are transmitted between vertebrate animals and human. It is the interaction between agents, host, and the environment they share that determines whether or not infection will be successful. Zoonotic diseases usually have a wide range of host and are particularly important sources of emerging new infectious diseases in human. From an evolutionary point of view, infections in humans and in other animals share common origins. Zoonotic agents are extremely variable in their host specificity and their impact on individuals and host population. The control of zoonoses depends on attempts to reduce vector populations of to limit contacts with reservoir species. In most instances, however, the control efforts require an environmental or human behavioral modification in addition to direct efforts to reduce the size of the vector population. In this article, I described the common natural history and ecologic characteristics of zoonoses, and explained why we should keep an eye on the change in zoonoses with emerging infections. And I also introduced the recent change in the incidence of notifiable zoonotic diseases among animals and humans in Korea, and the principle of control and prevention of zoonoses.
Animals
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Communicable Diseases
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Epidemiology*
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Host Specificity
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Humans
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Incidence
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Korea
;
Natural History
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Vertebrates
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Zoonoses*
7.Differences of Cynomorium songaricum seed quality and mutual parasitism in different host plants.
Guang-Hong LUO ; Jin WANG ; Xia YAN ; Yong ZHANG ; Gui-Xi ZHANG ; Jian-Qiang WANG
China Journal of Chinese Materia Medica 2013;38(20):3432-3437
In natural conditions, fully ripe Cynomorium songaricum seeds parasitize in Nitraria tangutorum or N. sphaerocarpa or N. sibirica or Zygophyllum xanthoxylom and Peganum harmala, were used in this study to research the morphological characteristics, embryo rate, seed viability, 1 000-grain weight, purity, water content and the seeds of different host parasitic relationship with each other. The results showed that the morphology, color and surface characteristics of the C. songaricum seeds are very similar in different hosts. According to the seed morphology can not be judged on its host. For the host to N. tangutorum or Peganum harmala or N. sibirica, we should choose the round hole screen less than 0.923 1 mm and larger than 1.066 2 mm to cleaning seeds. For the C. songaricum seeds parasitic in N. sphaerocarpa, the choice of slightly less than 0.926 1 mm and larger than 0.985 3 mm round hole screen to cleaning. For the parasitic seeds in Z. xanthoxylom, less than 0.751 3 mm and slightly larger than 1.035 3 mm round hole screen could be used. Highy significant correlation was found among the morphological indexes in C. songaricum seeds (P < 0.01). Morphological indexes and 1 000-grain weight were significantly correlated (0.01 < P < 0.05), but with the seed viability and the embryo rate were not found significant correlation. Grain weight is not related with the seed viability and the Fully mature C. songaricum seed viability is high and water content is low. The difference of the habitats and the host plants should be considered in the seed quality assessment and classification. The C. songaricum seeds on host plants are not selective, and the C. songaricum seeds from the host plants could be parasitized in other host plants.
China
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Cynomorium
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chemistry
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growth & development
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physiology
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Ecosystem
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Host Specificity
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Magnoliopsida
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physiology
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Seeds
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chemistry
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growth & development
;
physiology
8.Regulation of NF-kappaB signaling pathway by poxvirus.
Ze-Wei ZHENG ; Wen-Bo HAO ; Shu-Hong LUO
Chinese Journal of Virology 2012;28(4):471-476
Poxviruses, a type of ds-DNA viruses which mainly target at the epithelial cell, are the pathogens of human and animals. During the revolution of poxviruses, the viruses encode multiple proteins that regulate the immune system to monitor the viral reproductive cycle in host cells. The nuclear kappa B (NF-kappaB) pathway is essential to signal transcription in the innate immune system. Therefore, poxviruses have adopted different strategies to elude immune detection and destruction regulated by NF-kappaB. Further research in this field would help us develop preventive and therapeutic preparation for pox. Given the renewed interest in poxvirus, we review the current understanding of how the various classes of poxviralimmunomodulatory proteins target and manipulate the NF-kappaB pathway.
Animals
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Host Specificity
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Humans
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NF-kappa B
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metabolism
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Poxviridae
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physiology
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Signal Transduction
9.Genetic diversity of adenoviruses in bats of China.
Li-Hong CHEN ; Zhi-Qiang WU ; Yong-Feng HU ; Fan YANG ; Jian YANG ; Qi JIN
Chinese Journal of Virology 2012;28(4):403-408
Adenovirus remains a significant threat to public health. Recent studies showed that bats can harbor diverse adenoviruses. To further investigate the distribution and genetic diversity of bat adenoviruses in China, we collected throat and anal swab samples of 11 bat species from 6 provinces of China, including Beijing, Hunan, Jiangxi, Yunnan, Guizhou and Hainan. Nested PCR was used to identify potential bat adenoviruses from the samples, and positive results were cloned and sequenced for genetic diversity study. In addition, nucleotide sequence alignments based on corresponding amino acid sequence similarities were used for phylogenetic analyses. Our results showed that about 20% of bat species in China are positive to adenoviruses, and Myotis ricketti is likely to be the most important host of bat adenoviruses in all locations. Moreover, we identified two diverse sequences of bat adenoviruses from the same sample of Ia io in Guizhou province of China. In general, the average nucleotide and amino acid sequence similarities of the conserved region of DNA polymerases of bat adenoviruses are 66.6% and 74.7%, respectively. The differences between bat species and their residences environments may have driven the adaptive evolution of the viruses, leading to the genetic diversity of the bat adenoviruses.
Adenoviridae
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classification
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genetics
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isolation & purification
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physiology
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Animals
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China
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Chiroptera
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virology
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Genetic Variation
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Host Specificity
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Phylogeny
10.Diagnostic Usefulness of Galactomannan Assay for Invasive Aspergillosis.
Kyoung Ho SONG ; Shinwon LEE ; Hee Chang JANG ; Jae Hyun JEON ; Wan Beom PARK ; Kyoung Un PARK ; Sang Won PARK ; Myoung don OH ; Kang Won CHOE
Infection and Chemotherapy 2009;41(2):82-89
BACKGROUND: Invasive aspergillosis (IA) is an important cause of morbidity and mortality among immunocompromised patients. However, IA is difficult to diagnose, especially in the aforementioned patient group. Recently, galactomannan assay (GMA) using enzyme immunoassay has been introduced in Korea. We evaluated its diagnostic usefulness in the diagnosis of IA and we analyzed the results according to the underlying diseases. MATERIALS AND METHODS: All patients who underwent GMA during the period from October 2007 to June 2008 were evaluated retrospectively. According to the criteria of European Organization for Research and Treatment of Cancer/Mycoses Study Group, IA was classified into four clinical categories: 'proven', 'probable', 'possible', and 'non' IA. Patients with 'proven' and 'probable' IA were used as the reference standards for IA. GMA was performed using Platelia Aspergillus EIA (Bio-Rad, Hercules, CA, USA). Optical density index > or =0.5 was considered positive. RESULTS: Of the 144 patients who underwent GMA, two patients were classificed as 'proven' IA and sixteen patients were 'probable' IA. Overall sensitivity, specificity, positive predictive value, and negative predictive value of the assay were 50% (95% confidence interval [CI95], 26-74%), 88% (CI95, 81-93%), 38% (CI95, 19-59%), and 93% (CI95, 86-97%), respectively. Among the 99 patients with underlying hematologic diseases, GMA showed 67% (CI95, 35-90%) sensitivity and 89% (CI95, 80-94%) specificity, whereas in 45 patients with underlying diseases other than hematologic diseases, sensitivity and specificity of the assay were 17% (CI95, 0-64%) and 87% (CI95, 73-96%), respectively. CONCLUSION: GMA showed high specificity, irrespective of the patient population. However, sensitivity of GMA was low and the assay was less sensitive in patients with underlying diseases other than hematologic diseases than in patients with hematologic diseases.
Aspergillosis
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Aspergillus
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Hematologic Diseases
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Humans
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Immunocompromised Host
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Immunoenzyme Techniques
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Korea
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Mannans
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Retrospective Studies
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Sensitivity and Specificity