3.Circulating Tumor DNA Reflects Histologic and Clinical Characteristics of Various Lymphoma Subtypes
Jin Ju KIM ; Hye Min KIM ; Hongkyung KIM ; Soo-Jeong KIM ; Seung-Tae LEE ; Jong Rak CHOI ; Saeam SHIN ; Doh Yu HWANG
Cancer Research and Treatment 2024;56(1):314-323
Purpose:
We designed and evaluated the clinical performance of a plasma circulating tumor DNA (ctDNA) panel of 112 genes in various subtypes of lymphoma.
Materials and Methods:
Targeted deep sequencing with an error-corrected algorithm was performed in ctDNA from plasma samples that were collected before treatment in 42 lymphoma patients. Blood buffy coat was utilized as a germline control. We evaluated the targeted gene panel using mutation detection concordance on the plasma samples with matched tissue samples analyzed the mutation profiles of the ctDNA.
Results:
Next-generation sequencing analysis using matched tissue samples was available for 18 of the 42 patients. At least one mutation was detected in the majority of matched tissue biopsy samples (88.9%) and plasma samples (83.3%). A considerable number of mutations (40.4%) that were detected in the tissue samples were also found in the matched plasma samples. Majority of patients (21/42) were diffuse large B cell lymphoma patients. The overall detection rate of ctDNA in patients was 85.7% (36/42). The frequently mutated genes included PIM1, TET2, BCL2, KMT2D, KLHL6, HIST1H1E, and IRF8. A cutoff concentration (4,506 pg/mL) of ctDNA provided 88.9% sensitivity and 82.1% specificity to predict ctDNA mutation detection. The ctDNA concentration correlated with elevated lactate dehydrogenase level and the disease stage.
Conclusion
Our design panel can detect many actionable gene mutations, including those at low frequency. Therefore, liquid biopsy can be applied clinically in the evaluation of lymphoma patients, especially in aggressive lymphoma patients.
4.Characteristic visual phenotypes in Korean wild mice (KWM/Hym)
Munkhdelger JAMIYANSHARAV ; Haesol SHIN ; Boyoung KIM ; Hongkyung KIM ; Soo Jung HAN ; Je Kyung SEONG ; Jun Gyo SUH ; Kyoung Yul SEO
Laboratory Animal Research 2024;40(4):476-486
Background:
In the last few decades, numerous efforts have been made to develop a better mouse model to overcome the current limitations of laboratory inbred mouse models such as have a weaker and simpler immune status. As part of these efforts, in Korea, the Hallym university medical genetics research team has been developing a new inbred strain of Korean wild mouse KWM/Hym. It was suggested that this strain, which is derived from wild mice, might be useful for genetic research and may become a valuable tool for overcoming some limitations seen in inbred mice that are currently used in the laboratory. Furthermore, for this study, we aimed to determine the visual phenotype of this unique strain KWM/Hym, and consider whether and if they are suitable for visual research. To analyze their visual phenotype, we performed the functional and morphological examinations in KWM/Hym mice and compared the results with laboratory mice which are the most common background strain.
Results:
KWM/Hym had a thin corneal phenotype, thin but well-ordered retina due to their light body weight characteristic, and normal visual function similar to control mice. Unexpectedly, the KWM/Hym mice developed cataracts only at around 25 weeks old.
Conclusions
We suggest Korean wild mouse KWM/Hym is useful for visual experiments and could be an animal model of eye disease in humans.
5.Characteristic visual phenotypes in Korean wild mice (KWM/Hym)
Munkhdelger JAMIYANSHARAV ; Haesol SHIN ; Boyoung KIM ; Hongkyung KIM ; Soo Jung HAN ; Je Kyung SEONG ; Jun Gyo SUH ; Kyoung Yul SEO
Laboratory Animal Research 2024;40(4):476-486
Background:
In the last few decades, numerous efforts have been made to develop a better mouse model to overcome the current limitations of laboratory inbred mouse models such as have a weaker and simpler immune status. As part of these efforts, in Korea, the Hallym university medical genetics research team has been developing a new inbred strain of Korean wild mouse KWM/Hym. It was suggested that this strain, which is derived from wild mice, might be useful for genetic research and may become a valuable tool for overcoming some limitations seen in inbred mice that are currently used in the laboratory. Furthermore, for this study, we aimed to determine the visual phenotype of this unique strain KWM/Hym, and consider whether and if they are suitable for visual research. To analyze their visual phenotype, we performed the functional and morphological examinations in KWM/Hym mice and compared the results with laboratory mice which are the most common background strain.
Results:
KWM/Hym had a thin corneal phenotype, thin but well-ordered retina due to their light body weight characteristic, and normal visual function similar to control mice. Unexpectedly, the KWM/Hym mice developed cataracts only at around 25 weeks old.
Conclusions
We suggest Korean wild mouse KWM/Hym is useful for visual experiments and could be an animal model of eye disease in humans.
6.Characteristic visual phenotypes in Korean wild mice (KWM/Hym)
Munkhdelger JAMIYANSHARAV ; Haesol SHIN ; Boyoung KIM ; Hongkyung KIM ; Soo Jung HAN ; Je Kyung SEONG ; Jun Gyo SUH ; Kyoung Yul SEO
Laboratory Animal Research 2024;40(4):476-486
Background:
In the last few decades, numerous efforts have been made to develop a better mouse model to overcome the current limitations of laboratory inbred mouse models such as have a weaker and simpler immune status. As part of these efforts, in Korea, the Hallym university medical genetics research team has been developing a new inbred strain of Korean wild mouse KWM/Hym. It was suggested that this strain, which is derived from wild mice, might be useful for genetic research and may become a valuable tool for overcoming some limitations seen in inbred mice that are currently used in the laboratory. Furthermore, for this study, we aimed to determine the visual phenotype of this unique strain KWM/Hym, and consider whether and if they are suitable for visual research. To analyze their visual phenotype, we performed the functional and morphological examinations in KWM/Hym mice and compared the results with laboratory mice which are the most common background strain.
Results:
KWM/Hym had a thin corneal phenotype, thin but well-ordered retina due to their light body weight characteristic, and normal visual function similar to control mice. Unexpectedly, the KWM/Hym mice developed cataracts only at around 25 weeks old.
Conclusions
We suggest Korean wild mouse KWM/Hym is useful for visual experiments and could be an animal model of eye disease in humans.
7.Characteristic visual phenotypes in Korean wild mice (KWM/Hym)
Munkhdelger JAMIYANSHARAV ; Haesol SHIN ; Boyoung KIM ; Hongkyung KIM ; Soo Jung HAN ; Je Kyung SEONG ; Jun Gyo SUH ; Kyoung Yul SEO
Laboratory Animal Research 2024;40(4):476-486
Background:
In the last few decades, numerous efforts have been made to develop a better mouse model to overcome the current limitations of laboratory inbred mouse models such as have a weaker and simpler immune status. As part of these efforts, in Korea, the Hallym university medical genetics research team has been developing a new inbred strain of Korean wild mouse KWM/Hym. It was suggested that this strain, which is derived from wild mice, might be useful for genetic research and may become a valuable tool for overcoming some limitations seen in inbred mice that are currently used in the laboratory. Furthermore, for this study, we aimed to determine the visual phenotype of this unique strain KWM/Hym, and consider whether and if they are suitable for visual research. To analyze their visual phenotype, we performed the functional and morphological examinations in KWM/Hym mice and compared the results with laboratory mice which are the most common background strain.
Results:
KWM/Hym had a thin corneal phenotype, thin but well-ordered retina due to their light body weight characteristic, and normal visual function similar to control mice. Unexpectedly, the KWM/Hym mice developed cataracts only at around 25 weeks old.
Conclusions
We suggest Korean wild mouse KWM/Hym is useful for visual experiments and could be an animal model of eye disease in humans.
8.Characteristic visual phenotypes in Korean wild mice (KWM/Hym)
Munkhdelger JAMIYANSHARAV ; Haesol SHIN ; Boyoung KIM ; Hongkyung KIM ; Soo Jung HAN ; Je Kyung SEONG ; Jun Gyo SUH ; Kyoung Yul SEO
Laboratory Animal Research 2024;40(4):476-486
Background:
In the last few decades, numerous efforts have been made to develop a better mouse model to overcome the current limitations of laboratory inbred mouse models such as have a weaker and simpler immune status. As part of these efforts, in Korea, the Hallym university medical genetics research team has been developing a new inbred strain of Korean wild mouse KWM/Hym. It was suggested that this strain, which is derived from wild mice, might be useful for genetic research and may become a valuable tool for overcoming some limitations seen in inbred mice that are currently used in the laboratory. Furthermore, for this study, we aimed to determine the visual phenotype of this unique strain KWM/Hym, and consider whether and if they are suitable for visual research. To analyze their visual phenotype, we performed the functional and morphological examinations in KWM/Hym mice and compared the results with laboratory mice which are the most common background strain.
Results:
KWM/Hym had a thin corneal phenotype, thin but well-ordered retina due to their light body weight characteristic, and normal visual function similar to control mice. Unexpectedly, the KWM/Hym mice developed cataracts only at around 25 weeks old.
Conclusions
We suggest Korean wild mouse KWM/Hym is useful for visual experiments and could be an animal model of eye disease in humans.